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Schistosoma mansoni
cluster # 11035 cluster # 11035       Sequences # 29       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11035#0 length = 649 sequences # 1  
consensus_11035#1 length = 632 sequences # 10  
consensus_11035#2 length = 570 sequences # 17  
consensus_11035#3 length = 229 sequences # 1  

consensusID : consensus_11035#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 649
fasta sequence
                              [ATCCCAAGACACGGCGAGTCTGCTAATGGATGTAAGAAAGCCAAGTGCGAACCATTGGTGTTACGAATGTGGGTCGCCAAATCCTCAGCGGGCTAGCGTTACATATGGCATTAGGATATGTTTACGAGTGTGCATGGCAAACACATCTGTGGCATGAGGGAGAGTTGCAATATTAAGCTTCTCTGTCTCTGCATCCAAATTCAGACAATGGTACTAACATCGGGAAGTGACATCTGGACATTCGTGACAAAACATAGATAACGCTCTGGTAGCGCAGACGAGAACATCGCTTAACGGACGTCTTTCTCCGTTCTGCAACACCACCGTGATACTTTACAGNANCTCTNCTAGATAGGTAGCTCTGTTCAAAGAAACCGAGTGACAGATAATCTATCAGACTAGCTCGCATTCTGTCAGAGGAGTATCAACGACTTGCGACACTGAAGCCGTCGTGAGTGACAGGTGTGCGGAGTGAAGGAAAAGTCGCCAAGTGGGCGTAACTAATAAATCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCATCTTTATCCTCAGATAAACGAAACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCCTGGATCAAACAAAATGACCAGCTGCCATTCA]

[+] EMBL CD065765             [ATCCCAAGACACGGCGAGTCTGCTAATGGATGTAAGAAAGCCAAGTGCGAACCATTGGTGTTACGAATGTGGGTCGCCAAATCCTCAGCGGGCTAGCGTTACATATGGCATTAGGATATGTTTACGAGTGTGCATGGCAAACACATCTGTGGCATGAGGGAGAGTTGCAATATTAAGCTTCTCTGTCTCTGCATCCAAATTCAGACAATGGTACTAACATCGGGAAGTGACATCTGGACATTCGTGACAAAACATAGATAACGCTCTGGTAGCGCAGACGAGAACATCGCTTAACGGACGTCTTTCTCCGTTCTGCAACACCACCGTGATACTTTACAGNANCTCTNCTAGATAGGTAGCTCTGTTCAAAGAAACCGAGTGACAGATAATCTATCAGACTAGCTCGCATTCTGTCAGAGGAGTATCAACGACTTGCGACACTGAAGCCGTCGTGAGTGACAGGTGTGCGGAGTGAAGGAAAAGTCGCCAAGTGGGCGTAACTAATAAATCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCATCTTTATCCTCAGATAAACGAAACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCCTGGATCAAACAAAATGACCAGCTGCCATTCA]


>consensus_11035#0 ATCCCAAGACACGGCGAGTCTGCTAATGGATGTAAGAAAGCCAAGTGCGAACCATTGGTG TTACGAATGTGGGTCGCCAAATCCTCAGCGGGCTAGCGTTACATATGGCATTAGGATATG TTTACGAGTGTGCATGGCAAACACATCTGTGGCATGAGGGAGAGTTGCAATATTAAGCTT CTCTGTCTCTGCATCCAAATTCAGACAATGGTACTAACATCGGGAAGTGACATCTGGACA TTCGTGACAAAACATAGATAACGCTCTGGTAGCGCAGACGAGAACATCGCTTAACGGACG TCTTTCTCCGTTCTGCAACACCACCGTGATACTTTACAGNANCTCTNCTAGATAGGTAGC TCTGTTCAAAGAAACCGAGTGACAGATAATCTATCAGACTAGCTCGCATTCTGTCAGAGG AGTATCAACGACTTGCGACACTGAAGCCGTCGTGAGTGACAGGTGTGCGGAGTGAAGGAA AAGTCGCCAAGTGGGCGTAACTAATAAATCTACCAGTATAAATCATGTAAAAACAACCGG TGATCTGCCATCTTTATCCTCAGATAAACGAAACTTTCATGGTAATCAGACTAATTATCA AGCCCCTGATTATTATCCTGGATCAAACAAAATGACCAGCTGCCATTCA



consensusID : consensus_11035#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 632
fasta sequence
                              [AACTTTGGATGGCTAGCATGACACGGCGAGTGCTAATGGATGTCAAGAAAGCCAATGCGAACCATTTGTGTTTTGAATGTGGGTCGCCAAATCCTCAGTGGGCTAGCGTTACATATGGCATTTGGATATGTTTAGAGTGTTCAGGAAAACATCGTGGATTGGGGGTTCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAA-TAGTAAAGCTGCTGCTTTGTTGAGAGATAAGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGAAGAAGTCGCTAATGTGCGTAATAATAAATCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCATCTTTATCCTCAGATAAACGA-AACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCCTGGATCAAACAAAATGACCAGCT-GCCATTCAGACTTGGAATCCTGGTTAAAGGATACAATCTTATCTGAGGAGCATGATTCATTTACAACACCAGC-ACAAAGACAACTAACA]

[+] EMBL CD065502             [AACTTTGGATGGCTAGCATGACACGGCGAGTGCTAATGGATGTCAAGAAAGCCAATGCGAACCATTTGTGTTTTGAATGTGGGTCGCCAAATCCTCAGTGGGCTAGCGTTACATATGGCATTTGGATATGTTTAGAGTGTTCAGGAAAACATCGTGGATTGGGGGCTCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAACTAGTAAAGCTGCTGCTTTGTAGAGAGATAAGATTGCAACTGAAGCGTCTGGTGAGGTTCGGGATGAAGAAGTCGCTAATGTGCGTAATAATAAATCTACCAGTATACATCATGTAAAAACAACCG                                                                                                                                                                                                  ]
[+] EMBL CD065525             [            gcccaagGACACGGCGAGTGCTAATGGATGTCAAGAAAGCCAATGCGAACCATTGGTGTTTTGAATGTGGGTCGCCAAATCCTCAGTGGGCTAGCGTTACATATGGCATTTGGCTATGTTTAGAGTGTTCAGGAAAACATCGTGGATTGGGGGTTCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATCGGAATTGGAAAAAATGAAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAA TAGTAAAGCTGCTGCTTCGTTGAGAGATAAGATTGCAACTGAAGCGTCTGGTGAGGTTGGGGATGAAGAAGTCGCTAATGTGCGTAATAATAAATCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCATCTTTATCCTCAGATAAACGA AACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCC                                                                                                                  ]
[-] EMBL CD201064             [                                 TAATGGATGTCAAGAAAGCCAATGCGAACCATTTGTGTTTTGAATGTGGGTCGCCAAATCCTCAGTGGGCTAGCGTTACATATGGCATTTGGATATGTTTAGAGTGTTCAGGAAAACATCGTGGATTGGGGGTTCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAA TAGTAAAGCTGCTGCTTTGTTGAGAGATAAGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGAAGAAGTCGCTAATGTGCGTAATAATAAATCTACCAGTATAAATCATGTAAAAACAA                                                                                                                                                                                                     ]
[-] EMBL CD113907             [                                                                                        AAATCCTCAGTGGGCTAGCGTTACATATGCCATTTGTATATGTTTAGAGTGTTCAGGAAAACATCGTGGATTGGGGGTTCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAA TAGTAAAGCTGCTGCTTTGTTGAGAGATAAGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGAAGAAGTCGCTAATGTGCGTAATAATAAATCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCATCTTTATCCTCAGATAAACGA AACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCCTGGATCAAACAAAATGACCAGCT GCCATTCAGACTTGGAATCCTGGTTAAAGGATACAATCTTATCTGAGGAGCATGATTCATTTACAACACCAGC ACAAAGACAACTAACA]
[-] EMBL CD065702             [                                                                                                 GTGGGCTAGCGTTACATATGGCATTTGGATATGTTTAGAGTGTTCAGGAAAACATCGTGGATTGGGGGTTCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAA TAGTAAAGCTGCTGCTTTGTTGAGAGATAAGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGAAGAAGTCGCTAATGTGCGTAATAATACATCTACCAGTATAAATCATGTACAGACCACCGGTGATCTGCCATCTTGATCCTCAGATAAACGA AACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCCTGGATCAAACAAAATGACCAGCTCACCATTCAGACTTGGAATCCTGGTTAAAGACTACAATCTTATCTGAGGAGCATGATTCATTTACAACACCAGCAACAAAGACAAC     ]
[-] EMBL CD113844             [                                                                                                       TAGCTTTACATATGTCATTTGAATATNTTTAGAGTTTTCAGGAAAACATCGTGGATTGGGGNTTCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAA TAGTAAAGCTGCTGCTTTGTTGAGAGATAAGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGAAGAAGTCGCTAATGTGCGTAATAATAAATCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCATCTTTATCCTCAGATAAACGA AACTTTCATGGTAATCAGACTAATTATCAAGCTCCTGATTATTATCCTGGATCAACCAAAATGACCAGCT  CCATT                                                                                    ]
[+] EMBL CD113768             [                                                                                                                              TATG TTAGAGTGTTCAGGAAAACATCGTGGATTGGGGGTTCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTAGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAA TAGTAAAGCTGCTGCTTTGTT  GAGATAAGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGAAGAAGTCGCTAATGTGCGTAATAATAAATCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCATCTTTATCCTCAGATAAACGA AACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCCTGGACCAAACAAAATGACCAGCT GCCAT                                                                                     ]
[-] EMBL CD087862             [                                                                                                                                             CAGGAATACATCGTGGATTGGGGGTTCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAA TAGTAAAGCTGCTGCTTTGTTGAGAGATAAGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGAAGAAGTCGCTAATGTGCGTAATAATAAATCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCATCTTTATCCTCAGATAAACGACAAGGGTCATGc                                                                                                                                                      ]
[+] EMBL CD068256             [                                                                                                                                                                                                                                                                  AGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAA TAGTAAAGCTGCTGCTTTGTTGAGAGATAAGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGAAGAAGTCGCTAATGTGCGTAATAATAAATCTACCAGTATAAATCATGTAAAAACAA                                                                                                                                                                                                     ]
[-] EMBL CD128502             [                                                                                                                                                                                                                                                                                                                                                                                                                GTAATAATACATCTACCAGTATAAATCATGTAAAGACCACCGGTGATCTCCCATCTTTATCCTCAGATAAACGA AACTTTCATGGTAATCA                                                                                                                                                ]


>consensus_11035#1 AACTTTGGATGGCTAGCATGACACGGCGAGTGCTAATGGATGTCAAGAAAGCCAATGCGA ACCATTTGTGTTTTGAATGTGGGTCGCCAAATCCTCAGTGGGCTAGCGTTACATATGGCA TTTGGATATGTTTAGAGTGTTCAGGAAAACATCGTGGATTGGGGGTTCATTTAAGTTTTG TTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTTGGAG GCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTT TTCAAGAAAAGTACAATAGTAAAGCTGCTGCTTTGTTGAGAGATAAGATTGCAACTGAAG CGTCTGGTGAGGTTTGGGATGAAGAAGTCGCTAATGTGCGTAATAATAAATCTACCAGTA TAAATCATGTAAAAACAACCGGTGATCTGCCATCTTTATCCTCAGATAAACGAAACTTTC ATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCCTGGATCAAACAAAATGACCA GCTGCCATTCAGACTTGGAATCCTGGTTAAAGGATACAATCTTATCTGAGGAGCATGATT CATTTACAACACCAGCACAAAGACAACTAACA



consensusID : consensus_11035#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 17
consensus length = 570
fasta sequence
                              [GGTGGTACTCACTGTT-CATAT-GTGCAT-T-CGTGATATG-TTTAGAGTGTTCAGGAAAACATCGTGGATTGGGGGTTCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAATAGTAA-AGCTGCTGCTTTGTTGAGA-GATAAGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGA-AGA-AGTCGCTAATGTGCGTAATAATAAA-TCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCATCT-TTATCCTCAGATAAACGAAACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCC-TGGATCAAACAAAATGACCAGCTGCCATTCAGAC-TTGGAATCC-TGGTTA-AAGGATACAA-TCTTATCTG-AGGAG-CATGATTCATTTACAACACCAGCAACAAAGACAACAACTACTTCTGCTAATACACGTTATGATAAGTTCC]

[+] EMBL CD113779             [GGTGGTACTCACTGTT CATAT GTGCAT T CGTGATATG TTTAGAGTGTTCAGGAAAACATCGTGGATTGGGGGTTCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACAAGCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAATAGTAA AGCTGCTGCTTTGTT  GA GATAAGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGA AGA AGTCGCTAATGTGCGTAATAATAAA TCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCATCT TTATCCTCAGATAAACGAAACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCC TGGACCAAACAAAATGACCAGCTGCCATTCAGAC TTGGAATCC TGGTTA AAGGATACAA TCTTATCTG GGGAG CATGATTCATTTGCAACACCAGCAACAAAGACAACAACTACTTCTGCTAATACACGTTATGA        ]
[+] EMBL CD113816             [    GTACT AATGTT CATA   TGCAT T TGCGGTATG TATAGAGTG TCAGGAAAACATCGTGGATTGGGGGTTCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACACCCTGATTACAGACCTCAGTGGAGTTTTCACGAAAAGTACAATAGTAA AGCTGCTGCTTTGTTGAGACGACTAGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGACAGACAGTCGCTAATGTGCGTAATAATAAACTCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCATCT TTATCCTCAGATAAACGAAACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCC TGGATCAAACAAAATGACCAGCTGCCATTCAGAC TTGGAATCC TGGTTA AAGGATACAA TCTTA                                                                                 ]
[+] EMBL CD113895             [            TGTTACATAT GTGCATCT CGTGATATG TTTAGAGTGTTCAGGAAAACATCGTGGATTGGGGGTTCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAATAGTAA AGCTGCTGCTTTGTTGAGA GATAAGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGA AGA AGTCGCTAATGTGCGTAATAATAAA TCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCATCT TTATCCTCAGATAAACGAAACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCC TGGATCAAACAAAATGACCAGCTGCCATTCAGACTTTGGAATCCTTGGTTACAAGGATACAACCCTTATCTGAAGGAG CATGATTCATTTACAACACCAGCAACAAAGACAACAACTACTTCTGCTAATACACGTTATGA        ]
[+] EMBL CD113717             [              TT CATATCGTGCAT TCCGTGATATG ATTAGAGTGTTCAGGAAAACATCGTGGATTGGGGGTTCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAATAGTAA AGCTGCTGCTTTGTTGAGA GATAAGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGA AGA AGTCGCTAATGTGCGTAATAATAAA TCTACCAGTATAAATCATGTAAAAACAAGCGGTGATCTGCCATCT TTATCCTCAGATAAACGAAACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCC TGGATCAAACAAAATGACCAGCTGCCATTCAGAC TTGGAATCC TGGTTA AAGGATACAA TCTTATCTG AGGAG CATGATTCATTTACAACACCAGCAACAAAGACAACAACTACTTCTGCT                      ]
[+] EMBL CD113870             [                   TAT GTGCAT C CG GATATG TTTAGAGTGTTCAGGAAAACATCGTGGATTGGGGGTTCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAATAGTAA AGCTGCTGCTTTGTTGAGA GATAAGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGA AGA AGTCGCTAATGTGCGTAATAATAAA TCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCATCT TTATCCTCAGATAAACGAAACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCCTTGGAT                                                                                                                                                ]
[+] EMBL CD113715             [                     c GTGCAT C CGTG TATG ATTAGAGTGTTCAGGAAAACATCGTGGATTGGGGGTTCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCGAGAAAAGTACAATAGTAA AGCTGCTGCTTTGTTGAGA GATAAGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGA AGA AGTCGCTAATGTGCGTAATAATAAA TCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCATCT TTATCCTCAGATAAACGAAACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCC TGGATCAAACAAAATGACCAGCTGCCATTCAGAC TTGGAATCC TGGTTA AAGGATACAA TCTTATCTG AGGAG CATGATTCATTTACAACACCAGCAACAAAGACAACAACTACTTCTGCTAATACACGTTATG         ]
[+] EMBL CD113749             [                          catcc CGTG TATGATTTAGAGTGTTCAGGAAAACATCGTGGATTGGGGGTTCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCGAGAAAAGTACAATAGTAA AGCTGCTGCTTTGTTGAGA GATAAGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGA AGA AGTCGCTAATGTGCGTAATAATAAA TCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCATCT TTATCCTCAGATAAACGAAACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCC TGGATCAAACAAAATGACCAGCTGCCATTCAGAC TTGGAATCC TGGTTC AAGGATACAA TCTTATCTG AGGAG CATGATTCATTTACAACACCAGCAACAAAGACAACAACTACTTCTGGTAATACACGTTATGA        ]
[+] EMBL CD113780             [                                               AGTGTTCAGGAAAACATCGTGGA TGGGGG TCATTTAAG TATGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAATAGTAA AGCTGCTGCTTTGTTGAGA GATAAGATTGCAACTGAAGCGTCTGGTGAGGTTCGGGATGA AGA AGTCGCTAATGTGCGTAATAATAAA TCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCATCT TTATCCTCAGATAAACGAAACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCC TGGATCAAACAAAATGACCAGCTGCCATTCAGAC TTGGAATCC TGGTTA AAGGATACAA TCTTATCTG AGGAG CATGATTCATTTACAACACCAGCAACAAAGACAACAACTACTTCTGCTAATACACGTTATG         ]
[-] EMBL CD065733             [                                                       GGAAAACATCGTGGATTGGGGGTTCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAATAGTAA AGCTGCTGCTTTGTTGAGA GATAAGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGA AGA AGTCGCTAATGTGCGTAATAATAAA TCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCATCT TTATCCTCAGATAAACGAAACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCC TGGATCAAACAAAATGACCAGCTGCCATTCAGAC TTGGAATCC TGGTTA AAGGATAC A TCTTATCTG AGGAG CATGATTCATTTACAACACCAGC ACAAAGACAACAACTACTTCTGCT ATACA                ]
[-] EMBL CD065609             [                                                           AACATCGTGGATTGGGGCTTCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAATAGTAA AGCTGCTGCTTTGTTGAGA GATAAGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGA AGA AGTCGCTAATGTGCGTAATAATAAA TCTACCAGTATAAATCAGGTAAAAACAACCGGTGATCTGCCATCT TTATCCTCAGATAAACGAAACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCC TGGATCAAACAAAATGACCAGCTGCCATTCAGAC TTGGAATCC TGGTTA AAGGATAC A TCTTATCTG AGGAG CATGATTCATTTACAACACCAGC ACAAAGACAACAACTACTTCTGCT ATACA                ]
[-] EMBL CD113875             [                                                               TCGTGGATT GGGGTTCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAATAGTAA AGCTGCTGCTTTGTTGAGA GATAAGATTGCAACTGAGGCGTCTGGTGAGGTTTGGGATGA AGA AGTCGCTAATGTGCGTAATAATAAA TCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCATCT TTATCCTCAGATAAACGAAACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCC TGGATCAAACAAAATGACCAGCTGCCATTCAGAC TTGGAATCC TGGTTA AAGGATACAA CCTTATCTG AGGAG CATGATTCATTTACAACACCAGC ACAAAGAC ACTACTACTg                           ]
[-] EMBL CD065688             [                                                                              TCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAAGTGGAAAAAATGAAAGTTGGAGCCTACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACCATAGTAACAGCTGCTGCTTTGTTGAGA GAT AGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGA AGA AGTCGCTAATGTGCGTAATAATAAA TCTACCAGTATAAATCATGTCAAAACAACCGGTGATCTGCCATCTCTTATCCTCAGATAAACGAAACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCC TGGATCAAACAGAATGACCAGCTGCCATTCAGAC TTGGAATCC TGGTTA AAGGATACAA TCTTATCTG AGCAGACATGATTCATTTACAACA CAGCAACAAAGACAACAACTACTTCT CTAATACACGTTATGATAAGTTCC]
[-] EMBL CD113874             [                                                                                                  CAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTTGGAGTCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAATAGTAA AGCTGCTGCTTTGTTGAGA GATAAGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGA AGA AGTCGCTAATGTGCGTAATAATAAA TCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCATCT TTATCCTCAGATAAACGAAACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCC TGGATCAAACAAAATGACCAGCTGCCATTCAGAC TTGGAATCC TGGTTA AAGGATACAA TCTTATCTG AGGAG CATGATTCATTTACAACACCAGCAACAAAGACAATAACTACTTGTG                        ]
[-] EMBL CD128377             [                                                                                                                                              AAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAATAGTAA AGCTGCTGCTTTGTTGAGA GATAAGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGA AGA AGTCGCTAATGTGCGTAATAATAAA TCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCATCT TTATCCTCAGATAAACGAAACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCC TGGATCAAACAAAATGACCAGCTGCCATTCAGAC TTGGAATCC TGGTTA AAGGATACAA TCTTATCTG AGGAG CATGATTCATTTACAACACCAGC ACAAAGAC ACAACTACTTCTGTTAATACA                ]
[-] EMBL CD195365             [                                                                                                                                                                                                                                                                                                                          CGTAATAATAAA TCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCATCT TTATCCTCAGATAAACGAAACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCC TGGATCAAACAAAATGACCAGCTGCCATTCAGAC TTGGAATCC TGGTTA AAGGATACAA CCTTATCTG AGGAG CATGATTCATTTACAACACCAGCAACAAAG                                        ]
[-] EMBL CD128471             [                                                                                                                                                                                                                                                                                                                                                                                                                       AGACTAATTATCAAGCCCCTGATTATTATCC TGGATCAAACAAAATGACCAGCTGCCATTCAGAC TTGGAATCC TGGTTA AAGGTTACAA TCTTATCTG AGGAG CATGATTCATTTACAACACCAGC ACAAAGACAACAACTACTTCTGCTA  ACACGTTATGATAAGT   ]
[-] EMBL CD128332             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CCAGCTGCCATTCAGAC TTGGAATCC TGGTTA AAGGATACAA TCTTATCTG AGGAG CATGATTCATTTACAACACCAGCAACAAAGACAACAACTACTTCTGCTAATACA                ]


>consensus_11035#2 GGTGGTACTCACTGTTCATATGTGCATTCGTGATATGTTTAGAGTGTTCAGGAAAACATC GTGGATTGGGGGTTCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAAT TGGAATTGGAAAAAATGAAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCAC AACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAATAGTAAAGCTGCTGCTT TGTTGAGAGATAAGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGAAGAAGTCGCTA ATGTGCGTAATAATAAATCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCAT CTTTATCCTCAGATAAACGAAACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATT ATTATCCTGGATCAAACAAAATGACCAGCTGCCATTCAGACTTGGAATCCTGGTTAAAGG ATACAATCTTATCTGAGGAGCATGATTCATTTACAACACCAGCAACAAAGACAACAACTA CTTCTGCTAATACACGTTATGATAAGTTCC



consensusID : consensus_11035#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 229
fasta sequence
                              [GCCCAAGGACACGGCGAGTGCTAATGGATGTCAAGAAAGCCAATGCGAACCATTTGTGTTTTGAATGTGGGTCGCCAAATCCTCAGTGGGCTAGCGTTACATATGGCATTTGGATATGTTTAGAGTGTTCAGGAAAACATCGTGGATTGGGGGTTCATATAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGATTGGAATTGAAAAAAGTTCCGTGAGCCGTCG]

[-] EMBL CD065652             [GCCCAAGGACACGGCGAGTGCTAATGGATGTCAAGAAAGCCAATGCGAACCATTTGTGTTTTGAATGTGGGTCGCCAAATCCTCAGTGGGCTAGCGTTACATATGGCATTTGGATATGTTTAGAGTGTTCAGGAAAACATCGTGGATTGGGGGTTCATATAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGATTGGAATTGAAAAAAGTTCCGTGAGCCGTCG]


>consensus_11035#3 GCCCAAGGACACGGCGAGTGCTAATGGATGTCAAGAAAGCCAATGCGAACCATTTGTGTT TTGAATGTGGGTCGCCAAATCCTCAGTGGGCTAGCGTTACATATGGCATTTGGATATGTT TAGAGTGTTCAGGAAAACATCGTGGATTGGGGGTTCATATAAGTTTTGTTCGCTCAATTA ACATGGATAAATGGAAGATTGGAATTGAAAAAAGTTCCGTGAGCCGTCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11035#0      ------------ATCCCAAGACACGGCGAGTCTGCTAATGGATGT-AAGAAAGCCAAGTG 47
consensus_11035#3      ------------GCCCAAGGACACGGCGAG--TGCTAATGGATGTCAAGAAAGCCAA-TG 45
consensus_11035#1      AACTTTGGATGGCTAGCATGACACGGCGAG--TGCTAATGGATGTCAAGAAAGCCAA-TG 57
consensus_11035#2      ------------------------------------------------------------
                                                                                   

consensus_11035#0      CGAACCATTGGTGTTACGAATGTGGGTCGCCAAATCCTCAGCGG-GCTAGCGTTACATAT 106
consensus_11035#3      CGAACCATTTGTGTTTTGAATGTGGGTCGCCAAATCCTCAGTGG-GCTAGCGTTACATAT 104
consensus_11035#1      CGAACCATTTGTGTTTTGAATGTGGGTCGCCAAATCCTCAGTGG-GCTAGCGTTACATAT 116
consensus_11035#2      ---------------------------------------GGTGGTACTCACTGTTCATAT 21
                                                               * **  **  *  * *****

consensus_11035#0      G-GCATTAG-GATATGTTTACGAGTGTGCATGGCAAACACATCTGTGGCATGAGGGAGAG 164
consensus_11035#3      G-GCATTTG-GATATGTTTA-GAGTGTTCAGG---AAAACATC-GTGGATTGGGGGT--- 154
consensus_11035#1      G-GCATTTG-GATATGTTTA-GAGTGTTCAGG---AAAACATC-GTGGATTGGGGGT--- 166
consensus_11035#2      GTGCATTCGTGATATGTTTA-GAGTGTTCAGG---AAAACATC-GTGGATTGGGGGT--- 73
                       * ***** * ********** ****** ** *   ** ***** ****  ** ***    

consensus_11035#0      TTGCAATATTAAGCTTCTCTGTCTCTGCATCCAAATTCAGACAATGGT-ACTAACATCGG 223
consensus_11035#3      ---TCATAT-AAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAG--ATTGGAATTGA 208
consensus_11035#1      ---TCATTT-AAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGG 222
consensus_11035#2      ---TCATTT-AAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGG 129
                            ** * *** **   *  ***      **     * *     *  * *   ** * 

consensus_11035#0      GAAGTGACATCTGGACATTCGTGACAAAACATAGATAACGCTCTGGTAGCGCAGACGAGA 283
consensus_11035#3      AAAAAGTTCCGTGAGCCGTCG--------------------------------------- 229
consensus_11035#1      AAAAAA-----TGAAAGTTGGAGGCAACAGACA----------------TGCTAAGGAG- 260
consensus_11035#2      AAAAAA-----TGAAAGTTGGAGGCAACAGACA----------------TGCTAAGGAG- 167
                        **        **     * *                                       

consensus_11035#0      ACATCGCTTAACGGACGTCTTTCTCCGTTCTGCAACACCACCGTGATACTTTACAGNANC 343
consensus_11035#3      ------------------------------------------------------------
consensus_11035#1      --------------------TTTTTCGTCTCACAACCTGATTAC-AGACCTCAGTGGAGT 299
consensus_11035#2      --------------------TTTTTCGTCTCACAACCTGATTAC-AGACCTCAGTGGAGT 206
                                                                                   

consensus_11035#0      TCTNCTAGATAGGTAGCTCTGTTCAAAGAAACCGAGTGACAGATAATCTATCAGACTAGC 403
consensus_11035#3      ------------------------------------------------------------
consensus_11035#1      TTTC---------------------AAGAAA-------------AGTACAATAGTAAAGC 325
consensus_11035#2      TTTC---------------------AAGAAA-------------AGTACAATAGTAAAGC 232
                                                                                   

consensus_11035#0      TCGCATTCTGTCAGAGGAGTATCAACGACTTGCGACACTGAAGCCGTCGTGAGTGACAGG 463
consensus_11035#3      ------------------------------------------------------------
consensus_11035#1      TGCTGCTTTGTTGAGAGA--------------TAAGATTGCAACTG----AAGCGTCTGG 367
consensus_11035#2      TGCTGCTTTGTTGAGAGA--------------TAAGATTGCAACTG----AAGCGTCTGG 274
                                                                                   

consensus_11035#0      TGTGCGGAGTGAAGGAAAAGTCGCCAAGTGGGCGTAACTAATAAATCTACCAGTATAAAT 523
consensus_11035#3      ------------------------------------------------------------
consensus_11035#1      TGAGGTTTGGGATGAAGAAGTCGCTAA-TGTGCGTAA-TAATAAATCTACCAGTATAAAT 425
consensus_11035#2      TGAGGTTTGGGATGAAGAAGTCGCTAA-TGTGCGTAA-TAATAAATCTACCAGTATAAAT 332
                                                                                   

consensus_11035#0      CATGTAAAAACAACCGGTGATCTGCCATCTTTATCCTCAGATAAACGAAACTTTCATGGT 583
consensus_11035#3      ------------------------------------------------------------
consensus_11035#1      CATGTAAAAACAACCGGTGATCTGCCATCTTTATCCTCAGATAAACGAAACTTTCATGGT 485
consensus_11035#2      CATGTAAAAACAACCGGTGATCTGCCATCTTTATCCTCAGATAAACGAAACTTTCATGGT 392
                                                                                   

consensus_11035#0      AATCAGACTAATTATCAAGCCCCTGATTATTATCCTGGATCAAACAAAATGACCAGCTGC 643
consensus_11035#3      ------------------------------------------------------------
consensus_11035#1      AATCAGACTAATTATCAAGCCCCTGATTATTATCCTGGATCAAACAAAATGACCAGCTGC 545
consensus_11035#2      AATCAGACTAATTATCAAGCCCCTGATTATTATCCTGGATCAAACAAAATGACCAGCTGC 452
                                                                                   

consensus_11035#0      CATTCA------------------------------------------------------ 649
consensus_11035#3      ------------------------------------------------------------
consensus_11035#1      CATTCAGACTTGGAATCCTGGTTAAAGGATACAATCTTATCTGAGGAGCATGATTCATTT 605
consensus_11035#2      CATTCAGACTTGGAATCCTGGTTAAAGGATACAATCTTATCTGAGGAGCATGATTCATTT 512
                                                                                   

consensus_11035#0      ----------------------------------------------------------
consensus_11035#3      ----------------------------------------------------------
consensus_11035#1      ACAACACCAGCACAAAGACAACTAACA------------------------------- 632
consensus_11035#2      ACAACACCAGCAACAAAGACAACAACTACTTCTGCTAATACACGTTATGATAAGTTCC 570
                                                                                 




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)