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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11035#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 649 fasta sequence
[ATCCCAAGACACGGCGAGTCTGCTAATGGATGTAAGAAAGCCAAGTGCGAACCATTGGTGTTACGAATGTGGGTCGCCAAATCCTCAGCGGGCTAGCGTTACATATGGCATTAGGATATGTTTACGAGTGTGCATGGCAAACACATCTGTGGCATGAGGGAGAGTTGCAATATTAAGCTTCTCTGTCTCTGCATCCAAATTCAGACAATGGTACTAACATCGGGAAGTGACATCTGGACATTCGTGACAAAACATAGATAACGCTCTGGTAGCGCAGACGAGAACATCGCTTAACGGACGTCTTTCTCCGTTCTGCAACACCACCGTGATACTTTACAGNANCTCTNCTAGATAGGTAGCTCTGTTCAAAGAAACCGAGTGACAGATAATCTATCAGACTAGCTCGCATTCTGTCAGAGGAGTATCAACGACTTGCGACACTGAAGCCGTCGTGAGTGACAGGTGTGCGGAGTGAAGGAAAAGTCGCCAAGTGGGCGTAACTAATAAATCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCATCTTTATCCTCAGATAAACGAAACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCCTGGATCAAACAAAATGACCAGCTGCCATTCA]
[+] EMBL CD065765 [ATCCCAAGACACGGCGAGTCTGCTAATGGATGTAAGAAAGCCAAGTGCGAACCATTGGTGTTACGAATGTGGGTCGCCAAATCCTCAGCGGGCTAGCGTTACATATGGCATTAGGATATGTTTACGAGTGTGCATGGCAAACACATCTGTGGCATGAGGGAGAGTTGCAATATTAAGCTTCTCTGTCTCTGCATCCAAATTCAGACAATGGTACTAACATCGGGAAGTGACATCTGGACATTCGTGACAAAACATAGATAACGCTCTGGTAGCGCAGACGAGAACATCGCTTAACGGACGTCTTTCTCCGTTCTGCAACACCACCGTGATACTTTACAGNANCTCTNCTAGATAGGTAGCTCTGTTCAAAGAAACCGAGTGACAGATAATCTATCAGACTAGCTCGCATTCTGTCAGAGGAGTATCAACGACTTGCGACACTGAAGCCGTCGTGAGTGACAGGTGTGCGGAGTGAAGGAAAAGTCGCCAAGTGGGCGTAACTAATAAATCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCATCTTTATCCTCAGATAAACGAAACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCCTGGATCAAACAAAATGACCAGCTGCCATTCA]
consensusID : consensus_11035#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 632 fasta sequence
[AACTTTGGATGGCTAGCATGACACGGCGAGTGCTAATGGATGTCAAGAAAGCCAATGCGAACCATTTGTGTTTTGAATGTGGGTCGCCAAATCCTCAGTGGGCTAGCGTTACATATGGCATTTGGATATGTTTAGAGTGTTCAGGAAAACATCGTGGATTGGGGGTTCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAA-TAGTAAAGCTGCTGCTTTGTTGAGAGATAAGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGAAGAAGTCGCTAATGTGCGTAATAATAAATCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCATCTTTATCCTCAGATAAACGA-AACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCCTGGATCAAACAAAATGACCAGCT-GCCATTCAGACTTGGAATCCTGGTTAAAGGATACAATCTTATCTGAGGAGCATGATTCATTTACAACACCAGC-ACAAAGACAACTAACA]
[+] EMBL CD065502 [AACTTTGGATGGCTAGCATGACACGGCGAGTGCTAATGGATGTCAAGAAAGCCAATGCGAACCATTTGTGTTTTGAATGTGGGTCGCCAAATCCTCAGTGGGCTAGCGTTACATATGGCATTTGGATATGTTTAGAGTGTTCAGGAAAACATCGTGGATTGGGGGCTCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAACTAGTAAAGCTGCTGCTTTGTAGAGAGATAAGATTGCAACTGAAGCGTCTGGTGAGGTTCGGGATGAAGAAGTCGCTAATGTGCGTAATAATAAATCTACCAGTATACATCATGTAAAAACAACCG ]
[+] EMBL CD065525 [ gcccaagGACACGGCGAGTGCTAATGGATGTCAAGAAAGCCAATGCGAACCATTGGTGTTTTGAATGTGGGTCGCCAAATCCTCAGTGGGCTAGCGTTACATATGGCATTTGGCTATGTTTAGAGTGTTCAGGAAAACATCGTGGATTGGGGGTTCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATCGGAATTGGAAAAAATGAAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAA TAGTAAAGCTGCTGCTTCGTTGAGAGATAAGATTGCAACTGAAGCGTCTGGTGAGGTTGGGGATGAAGAAGTCGCTAATGTGCGTAATAATAAATCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCATCTTTATCCTCAGATAAACGA AACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCC ]
[-] EMBL CD201064 [ TAATGGATGTCAAGAAAGCCAATGCGAACCATTTGTGTTTTGAATGTGGGTCGCCAAATCCTCAGTGGGCTAGCGTTACATATGGCATTTGGATATGTTTAGAGTGTTCAGGAAAACATCGTGGATTGGGGGTTCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAA TAGTAAAGCTGCTGCTTTGTTGAGAGATAAGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGAAGAAGTCGCTAATGTGCGTAATAATAAATCTACCAGTATAAATCATGTAAAAACAA ]
[-] EMBL CD113907 [ AAATCCTCAGTGGGCTAGCGTTACATATGCCATTTGTATATGTTTAGAGTGTTCAGGAAAACATCGTGGATTGGGGGTTCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAA TAGTAAAGCTGCTGCTTTGTTGAGAGATAAGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGAAGAAGTCGCTAATGTGCGTAATAATAAATCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCATCTTTATCCTCAGATAAACGA AACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCCTGGATCAAACAAAATGACCAGCT GCCATTCAGACTTGGAATCCTGGTTAAAGGATACAATCTTATCTGAGGAGCATGATTCATTTACAACACCAGC ACAAAGACAACTAACA]
[-] EMBL CD065702 [ GTGGGCTAGCGTTACATATGGCATTTGGATATGTTTAGAGTGTTCAGGAAAACATCGTGGATTGGGGGTTCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAA TAGTAAAGCTGCTGCTTTGTTGAGAGATAAGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGAAGAAGTCGCTAATGTGCGTAATAATACATCTACCAGTATAAATCATGTACAGACCACCGGTGATCTGCCATCTTGATCCTCAGATAAACGA AACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCCTGGATCAAACAAAATGACCAGCTCACCATTCAGACTTGGAATCCTGGTTAAAGACTACAATCTTATCTGAGGAGCATGATTCATTTACAACACCAGCAACAAAGACAAC ]
[-] EMBL CD113844 [ TAGCTTTACATATGTCATTTGAATATNTTTAGAGTTTTCAGGAAAACATCGTGGATTGGGGNTTCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAA TAGTAAAGCTGCTGCTTTGTTGAGAGATAAGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGAAGAAGTCGCTAATGTGCGTAATAATAAATCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCATCTTTATCCTCAGATAAACGA AACTTTCATGGTAATCAGACTAATTATCAAGCTCCTGATTATTATCCTGGATCAACCAAAATGACCAGCT CCATT ]
[+] EMBL CD113768 [ TATG TTAGAGTGTTCAGGAAAACATCGTGGATTGGGGGTTCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTAGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAA TAGTAAAGCTGCTGCTTTGTT GAGATAAGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGAAGAAGTCGCTAATGTGCGTAATAATAAATCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCATCTTTATCCTCAGATAAACGA AACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCCTGGACCAAACAAAATGACCAGCT GCCAT ]
[-] EMBL CD087862 [ CAGGAATACATCGTGGATTGGGGGTTCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAA TAGTAAAGCTGCTGCTTTGTTGAGAGATAAGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGAAGAAGTCGCTAATGTGCGTAATAATAAATCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCATCTTTATCCTCAGATAAACGACAAGGGTCATGc ]
[+] EMBL CD068256 [ AGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAA TAGTAAAGCTGCTGCTTTGTTGAGAGATAAGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGAAGAAGTCGCTAATGTGCGTAATAATAAATCTACCAGTATAAATCATGTAAAAACAA ]
[-] EMBL CD128502 [ GTAATAATACATCTACCAGTATAAATCATGTAAAGACCACCGGTGATCTCCCATCTTTATCCTCAGATAAACGA AACTTTCATGGTAATCA ]
consensusID : consensus_11035#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 570 fasta sequence
[GGTGGTACTCACTGTT-CATAT-GTGCAT-T-CGTGATATG-TTTAGAGTGTTCAGGAAAACATCGTGGATTGGGGGTTCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAATAGTAA-AGCTGCTGCTTTGTTGAGA-GATAAGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGA-AGA-AGTCGCTAATGTGCGTAATAATAAA-TCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCATCT-TTATCCTCAGATAAACGAAACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCC-TGGATCAAACAAAATGACCAGCTGCCATTCAGAC-TTGGAATCC-TGGTTA-AAGGATACAA-TCTTATCTG-AGGAG-CATGATTCATTTACAACACCAGCAACAAAGACAACAACTACTTCTGCTAATACACGTTATGATAAGTTCC]
[+] EMBL CD113779 [GGTGGTACTCACTGTT CATAT GTGCAT T CGTGATATG TTTAGAGTGTTCAGGAAAACATCGTGGATTGGGGGTTCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACAAGCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAATAGTAA AGCTGCTGCTTTGTT GA GATAAGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGA AGA AGTCGCTAATGTGCGTAATAATAAA TCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCATCT TTATCCTCAGATAAACGAAACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCC TGGACCAAACAAAATGACCAGCTGCCATTCAGAC TTGGAATCC TGGTTA AAGGATACAA TCTTATCTG GGGAG CATGATTCATTTGCAACACCAGCAACAAAGACAACAACTACTTCTGCTAATACACGTTATGA ]
[+] EMBL CD113816 [ GTACT AATGTT CATA TGCAT T TGCGGTATG TATAGAGTG TCAGGAAAACATCGTGGATTGGGGGTTCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACACCCTGATTACAGACCTCAGTGGAGTTTTCACGAAAAGTACAATAGTAA AGCTGCTGCTTTGTTGAGACGACTAGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGACAGACAGTCGCTAATGTGCGTAATAATAAACTCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCATCT TTATCCTCAGATAAACGAAACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCC TGGATCAAACAAAATGACCAGCTGCCATTCAGAC TTGGAATCC TGGTTA AAGGATACAA TCTTA ]
[+] EMBL CD113895 [ TGTTACATAT GTGCATCT CGTGATATG TTTAGAGTGTTCAGGAAAACATCGTGGATTGGGGGTTCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAATAGTAA AGCTGCTGCTTTGTTGAGA GATAAGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGA AGA AGTCGCTAATGTGCGTAATAATAAA TCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCATCT TTATCCTCAGATAAACGAAACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCC TGGATCAAACAAAATGACCAGCTGCCATTCAGACTTTGGAATCCTTGGTTACAAGGATACAACCCTTATCTGAAGGAG CATGATTCATTTACAACACCAGCAACAAAGACAACAACTACTTCTGCTAATACACGTTATGA ]
[+] EMBL CD113717 [ TT CATATCGTGCAT TCCGTGATATG ATTAGAGTGTTCAGGAAAACATCGTGGATTGGGGGTTCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAATAGTAA AGCTGCTGCTTTGTTGAGA GATAAGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGA AGA AGTCGCTAATGTGCGTAATAATAAA TCTACCAGTATAAATCATGTAAAAACAAGCGGTGATCTGCCATCT TTATCCTCAGATAAACGAAACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCC TGGATCAAACAAAATGACCAGCTGCCATTCAGAC TTGGAATCC TGGTTA AAGGATACAA TCTTATCTG AGGAG CATGATTCATTTACAACACCAGCAACAAAGACAACAACTACTTCTGCT ]
[+] EMBL CD113870 [ TAT GTGCAT C CG GATATG TTTAGAGTGTTCAGGAAAACATCGTGGATTGGGGGTTCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAATAGTAA AGCTGCTGCTTTGTTGAGA GATAAGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGA AGA AGTCGCTAATGTGCGTAATAATAAA TCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCATCT TTATCCTCAGATAAACGAAACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCCTTGGAT ]
[+] EMBL CD113715 [ c GTGCAT C CGTG TATG ATTAGAGTGTTCAGGAAAACATCGTGGATTGGGGGTTCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCGAGAAAAGTACAATAGTAA AGCTGCTGCTTTGTTGAGA GATAAGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGA AGA AGTCGCTAATGTGCGTAATAATAAA TCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCATCT TTATCCTCAGATAAACGAAACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCC TGGATCAAACAAAATGACCAGCTGCCATTCAGAC TTGGAATCC TGGTTA AAGGATACAA TCTTATCTG AGGAG CATGATTCATTTACAACACCAGCAACAAAGACAACAACTACTTCTGCTAATACACGTTATG ]
[+] EMBL CD113749 [ catcc CGTG TATGATTTAGAGTGTTCAGGAAAACATCGTGGATTGGGGGTTCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCGAGAAAAGTACAATAGTAA AGCTGCTGCTTTGTTGAGA GATAAGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGA AGA AGTCGCTAATGTGCGTAATAATAAA TCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCATCT TTATCCTCAGATAAACGAAACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCC TGGATCAAACAAAATGACCAGCTGCCATTCAGAC TTGGAATCC TGGTTC AAGGATACAA TCTTATCTG AGGAG CATGATTCATTTACAACACCAGCAACAAAGACAACAACTACTTCTGGTAATACACGTTATGA ]
[+] EMBL CD113780 [ AGTGTTCAGGAAAACATCGTGGA TGGGGG TCATTTAAG TATGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAATAGTAA AGCTGCTGCTTTGTTGAGA GATAAGATTGCAACTGAAGCGTCTGGTGAGGTTCGGGATGA AGA AGTCGCTAATGTGCGTAATAATAAA TCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCATCT TTATCCTCAGATAAACGAAACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCC TGGATCAAACAAAATGACCAGCTGCCATTCAGAC TTGGAATCC TGGTTA AAGGATACAA TCTTATCTG AGGAG CATGATTCATTTACAACACCAGCAACAAAGACAACAACTACTTCTGCTAATACACGTTATG ]
[-] EMBL CD065733 [ GGAAAACATCGTGGATTGGGGGTTCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAATAGTAA AGCTGCTGCTTTGTTGAGA GATAAGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGA AGA AGTCGCTAATGTGCGTAATAATAAA TCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCATCT TTATCCTCAGATAAACGAAACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCC TGGATCAAACAAAATGACCAGCTGCCATTCAGAC TTGGAATCC TGGTTA AAGGATAC A TCTTATCTG AGGAG CATGATTCATTTACAACACCAGC ACAAAGACAACAACTACTTCTGCT ATACA ]
[-] EMBL CD065609 [ AACATCGTGGATTGGGGCTTCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAATAGTAA AGCTGCTGCTTTGTTGAGA GATAAGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGA AGA AGTCGCTAATGTGCGTAATAATAAA TCTACCAGTATAAATCAGGTAAAAACAACCGGTGATCTGCCATCT TTATCCTCAGATAAACGAAACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCC TGGATCAAACAAAATGACCAGCTGCCATTCAGAC TTGGAATCC TGGTTA AAGGATAC A TCTTATCTG AGGAG CATGATTCATTTACAACACCAGC ACAAAGACAACAACTACTTCTGCT ATACA ]
[-] EMBL CD113875 [ TCGTGGATT GGGGTTCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAATAGTAA AGCTGCTGCTTTGTTGAGA GATAAGATTGCAACTGAGGCGTCTGGTGAGGTTTGGGATGA AGA AGTCGCTAATGTGCGTAATAATAAA TCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCATCT TTATCCTCAGATAAACGAAACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCC TGGATCAAACAAAATGACCAGCTGCCATTCAGAC TTGGAATCC TGGTTA AAGGATACAA CCTTATCTG AGGAG CATGATTCATTTACAACACCAGC ACAAAGAC ACTACTACTg ]
[-] EMBL CD065688 [ TCATTTAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAAGTGGAAAAAATGAAAGTTGGAGCCTACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACCATAGTAACAGCTGCTGCTTTGTTGAGA GAT AGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGA AGA AGTCGCTAATGTGCGTAATAATAAA TCTACCAGTATAAATCATGTCAAAACAACCGGTGATCTGCCATCTCTTATCCTCAGATAAACGAAACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCC TGGATCAAACAGAATGACCAGCTGCCATTCAGAC TTGGAATCC TGGTTA AAGGATACAA TCTTATCTG AGCAGACATGATTCATTTACAACA CAGCAACAAAGACAACAACTACTTCT CTAATACACGTTATGATAAGTTCC]
[-] EMBL CD113874 [ CAATTAACATGGATAAATGGAAGGAATTGGAATTGGAAAAAATGAAAGTTGGAGTCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAATAGTAA AGCTGCTGCTTTGTTGAGA GATAAGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGA AGA AGTCGCTAATGTGCGTAATAATAAA TCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCATCT TTATCCTCAGATAAACGAAACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCC TGGATCAAACAAAATGACCAGCTGCCATTCAGAC TTGGAATCC TGGTTA AAGGATACAA TCTTATCTG AGGAG CATGATTCATTTACAACACCAGCAACAAAGACAATAACTACTTGTG ]
[-] EMBL CD128377 [ AAAGTTGGAGGCAACAGACATGCTAAGGAGTTTTTCGTCTCACAACCTGATTACAGACCTCAGTGGAGTTTTCAAGAAAAGTACAATAGTAA AGCTGCTGCTTTGTTGAGA GATAAGATTGCAACTGAAGCGTCTGGTGAGGTTTGGGATGA AGA AGTCGCTAATGTGCGTAATAATAAA TCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCATCT TTATCCTCAGATAAACGAAACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCC TGGATCAAACAAAATGACCAGCTGCCATTCAGAC TTGGAATCC TGGTTA AAGGATACAA TCTTATCTG AGGAG CATGATTCATTTACAACACCAGC ACAAAGAC ACAACTACTTCTGTTAATACA ]
[-] EMBL CD195365 [ CGTAATAATAAA TCTACCAGTATAAATCATGTAAAAACAACCGGTGATCTGCCATCT TTATCCTCAGATAAACGAAACTTTCATGGTAATCAGACTAATTATCAAGCCCCTGATTATTATCC TGGATCAAACAAAATGACCAGCTGCCATTCAGAC TTGGAATCC TGGTTA AAGGATACAA CCTTATCTG AGGAG CATGATTCATTTACAACACCAGCAACAAAG ]
[-] EMBL CD128471 [ AGACTAATTATCAAGCCCCTGATTATTATCC TGGATCAAACAAAATGACCAGCTGCCATTCAGAC TTGGAATCC TGGTTA AAGGTTACAA TCTTATCTG AGGAG CATGATTCATTTACAACACCAGC ACAAAGACAACAACTACTTCTGCTA ACACGTTATGATAAGT ]
[-] EMBL CD128332 [ CCAGCTGCCATTCAGAC TTGGAATCC TGGTTA AAGGATACAA TCTTATCTG AGGAG CATGATTCATTTACAACACCAGCAACAAAGACAACAACTACTTCTGCTAATACA ]
consensusID : consensus_11035#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 229 fasta sequence
[GCCCAAGGACACGGCGAGTGCTAATGGATGTCAAGAAAGCCAATGCGAACCATTTGTGTTTTGAATGTGGGTCGCCAAATCCTCAGTGGGCTAGCGTTACATATGGCATTTGGATATGTTTAGAGTGTTCAGGAAAACATCGTGGATTGGGGGTTCATATAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGATTGGAATTGAAAAAAGTTCCGTGAGCCGTCG]
[-] EMBL CD065652 [GCCCAAGGACACGGCGAGTGCTAATGGATGTCAAGAAAGCCAATGCGAACCATTTGTGTTTTGAATGTGGGTCGCCAAATCCTCAGTGGGCTAGCGTTACATATGGCATTTGGATATGTTTAGAGTGTTCAGGAAAACATCGTGGATTGGGGGTTCATATAAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGATTGGAATTGAAAAAAGTTCCGTGAGCCGTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11035#0 ------------ATCCCAAGACACGGCGAGTCTGCTAATGGATGT-AAGAAAGCCAAGTG 47
consensus_11035#3 ------------GCCCAAGGACACGGCGAG--TGCTAATGGATGTCAAGAAAGCCAA-TG 45
consensus_11035#1 AACTTTGGATGGCTAGCATGACACGGCGAG--TGCTAATGGATGTCAAGAAAGCCAA-TG 57
consensus_11035#2 ------------------------------------------------------------
consensus_11035#0 CGAACCATTGGTGTTACGAATGTGGGTCGCCAAATCCTCAGCGG-GCTAGCGTTACATAT 106
consensus_11035#3 CGAACCATTTGTGTTTTGAATGTGGGTCGCCAAATCCTCAGTGG-GCTAGCGTTACATAT 104
consensus_11035#1 CGAACCATTTGTGTTTTGAATGTGGGTCGCCAAATCCTCAGTGG-GCTAGCGTTACATAT 116
consensus_11035#2 ---------------------------------------GGTGGTACTCACTGTTCATAT 21
* ** ** * * *****
consensus_11035#0 G-GCATTAG-GATATGTTTACGAGTGTGCATGGCAAACACATCTGTGGCATGAGGGAGAG 164
consensus_11035#3 G-GCATTTG-GATATGTTTA-GAGTGTTCAGG---AAAACATC-GTGGATTGGGGGT--- 154
consensus_11035#1 G-GCATTTG-GATATGTTTA-GAGTGTTCAGG---AAAACATC-GTGGATTGGGGGT--- 166
consensus_11035#2 GTGCATTCGTGATATGTTTA-GAGTGTTCAGG---AAAACATC-GTGGATTGGGGGT--- 73
* ***** * ********** ****** ** * ** ***** **** ** ***
consensus_11035#0 TTGCAATATTAAGCTTCTCTGTCTCTGCATCCAAATTCAGACAATGGT-ACTAACATCGG 223
consensus_11035#3 ---TCATAT-AAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAG--ATTGGAATTGA 208
consensus_11035#1 ---TCATTT-AAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGG 222
consensus_11035#2 ---TCATTT-AAGTTTTGTTCGCTCAATTAACATGGATAAATGGAAGGAATTGGAATTGG 129
** * *** ** * *** ** * * * * * ** *
consensus_11035#0 GAAGTGACATCTGGACATTCGTGACAAAACATAGATAACGCTCTGGTAGCGCAGACGAGA 283
consensus_11035#3 AAAAAGTTCCGTGAGCCGTCG--------------------------------------- 229
consensus_11035#1 AAAAAA-----TGAAAGTTGGAGGCAACAGACA----------------TGCTAAGGAG- 260
consensus_11035#2 AAAAAA-----TGAAAGTTGGAGGCAACAGACA----------------TGCTAAGGAG- 167
** ** * *
consensus_11035#0 ACATCGCTTAACGGACGTCTTTCTCCGTTCTGCAACACCACCGTGATACTTTACAGNANC 343
consensus_11035#3 ------------------------------------------------------------
consensus_11035#1 --------------------TTTTTCGTCTCACAACCTGATTAC-AGACCTCAGTGGAGT 299
consensus_11035#2 --------------------TTTTTCGTCTCACAACCTGATTAC-AGACCTCAGTGGAGT 206
consensus_11035#0 TCTNCTAGATAGGTAGCTCTGTTCAAAGAAACCGAGTGACAGATAATCTATCAGACTAGC 403
consensus_11035#3 ------------------------------------------------------------
consensus_11035#1 TTTC---------------------AAGAAA-------------AGTACAATAGTAAAGC 325
consensus_11035#2 TTTC---------------------AAGAAA-------------AGTACAATAGTAAAGC 232
consensus_11035#0 TCGCATTCTGTCAGAGGAGTATCAACGACTTGCGACACTGAAGCCGTCGTGAGTGACAGG 463
consensus_11035#3 ------------------------------------------------------------
consensus_11035#1 TGCTGCTTTGTTGAGAGA--------------TAAGATTGCAACTG----AAGCGTCTGG 367
consensus_11035#2 TGCTGCTTTGTTGAGAGA--------------TAAGATTGCAACTG----AAGCGTCTGG 274
consensus_11035#0 TGTGCGGAGTGAAGGAAAAGTCGCCAAGTGGGCGTAACTAATAAATCTACCAGTATAAAT 523
consensus_11035#3 ------------------------------------------------------------
consensus_11035#1 TGAGGTTTGGGATGAAGAAGTCGCTAA-TGTGCGTAA-TAATAAATCTACCAGTATAAAT 425
consensus_11035#2 TGAGGTTTGGGATGAAGAAGTCGCTAA-TGTGCGTAA-TAATAAATCTACCAGTATAAAT 332
consensus_11035#0 CATGTAAAAACAACCGGTGATCTGCCATCTTTATCCTCAGATAAACGAAACTTTCATGGT 583
consensus_11035#3 ------------------------------------------------------------
consensus_11035#1 CATGTAAAAACAACCGGTGATCTGCCATCTTTATCCTCAGATAAACGAAACTTTCATGGT 485
consensus_11035#2 CATGTAAAAACAACCGGTGATCTGCCATCTTTATCCTCAGATAAACGAAACTTTCATGGT 392
consensus_11035#0 AATCAGACTAATTATCAAGCCCCTGATTATTATCCTGGATCAAACAAAATGACCAGCTGC 643
consensus_11035#3 ------------------------------------------------------------
consensus_11035#1 AATCAGACTAATTATCAAGCCCCTGATTATTATCCTGGATCAAACAAAATGACCAGCTGC 545
consensus_11035#2 AATCAGACTAATTATCAAGCCCCTGATTATTATCCTGGATCAAACAAAATGACCAGCTGC 452
consensus_11035#0 CATTCA------------------------------------------------------ 649
consensus_11035#3 ------------------------------------------------------------
consensus_11035#1 CATTCAGACTTGGAATCCTGGTTAAAGGATACAATCTTATCTGAGGAGCATGATTCATTT 605
consensus_11035#2 CATTCAGACTTGGAATCCTGGTTAAAGGATACAATCTTATCTGAGGAGCATGATTCATTT 512
consensus_11035#0 ----------------------------------------------------------
consensus_11035#3 ----------------------------------------------------------
consensus_11035#1 ACAACACCAGCACAAAGACAACTAACA------------------------------- 632
consensus_11035#2 ACAACACCAGCAACAAAGACAACAACTACTTCTGCTAATACACGTTATGATAAGTTCC 570
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||