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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11049#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1371 fasta sequence
[AAACTTGCAGGACTTTACATGCTCAGCGTGTCACTCAGGTTTCATTGAAGCAATTAGCCCAGGAAGTGGTTTATCATCGAATCCAACAGAAGTATATATCTGTCATTCTAACCTTTATTTATAACAGTTAGATGCAATGCAGATGATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTTTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGATGAGTCATTAGAAAGGGAAAGTTTATCTAGAAGGTCGCGACGATCAACAAGGAATTCAAATCATAGGTCGACACGAGAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTAT-CCAGTTATCAAGTGTGGATCATCCATT-CAGATTGCCATTCTTATCAAACTTCGGATCAGCTGATGGAGATATGCAAAATTTTGTTTTTAATAGAGCTATGTTTGACCAGTTTATCACTGTGTTAATGAATGAGTTACAAGT-GGGTCCGCCACCCGCCCCAGAATCAGCCATTGCAGACTTACCTACAATTAGTTTGACTGAAGAACAAGCATTAAAGTTGGGTATTTGTTCAATATGCTTTGATGATTTCAAAGAATCCGAATCAGTTATCAGACTACCATGTGCTCACACCTACCATCAAACTTGTGTTACAACATGGTTAAAACAGCACGGAACTTGTCCAGTTTGTCGAAAGGATTTATCCGGACATGATACTTCACGATATGAGGAT-CCAGCT-CAAACTTAACAGGAAATAGTAATGGTTCAAGCTCTTCCACTTCTTAGTCTTCATTATTCTTTCAATTTTTCTAAAATAAATATAAAACCGTGAATTATATTCATTAAATTTGTCTATTTTCACACAAACACTTCAGAAACAAGCCAGCTATACATATATATATATCCCTCCAGTAAACTGTCGTCGAAGTGTACCAGCGAGATGCTGTATAGTTTCATCATTTTCTCTTTTTTCCTGTCTCTTCCCATTGTGTAGCATATTTTTTTCCTTGTGTATGTATGATGAACCCAACCAGCCCTGTG-TTA-TT-TGTGTTTGATAATTTTTTCCCTGTTTTTTTCCAAATCCAACTTTTCTATTAAGATTTATTTTTACCAACATTGTTGCATTATCTTACCCAATTAATTTCACACTGACTATTAAATGCATCCATCTTTGTTTTTTTCACTATTATTATTGTTCTTTTATTCACTAGCTTCGTGATATGACTACTACTTGCTTTTTAAGCCCCACTCCACCTTTTGGCAGAAATAAAAGTAAATACTCAGAAGAGGGTTTTTTCATATTTCTCTACTTGTATTGTAGTAATTGTCACTTAATTATCAATCAATAAAAAT]
[+] EMBL CD181324 [AAACTT GACTTTGCATGCTCAGCGTGTCACTCAGGTTTCATTGAAGCAATTAGCCCAGGAAGTGGTTTATCATCGAATCCAACAGAAGTATATATCTGTCATTCTAACCTTTATTTATAACAGTTAGATGCAATGCAGATGATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAATTTCGTTCGCTATTTTGCAGCACCTAGAGATAATCTTAGTTCAACAGATGATGAGTCATTAGAAAGGGAAAGTTTATCTAGAAGGTCGCGACGATCAACAAGGAATTCAAATCATAGGTCGACACGAGAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTTCACTCGTATCCCAG TATCAAGTGTGGATCATCCATTACAGA TG CATTNCTAT ]
[+] EMBL CD181322 [AAACTTGCAGGACTTTACATGCTCAGCGTGTCACTCAGGTTTCATTGAAGCAATTAGCCCAGGAAGTGGTTTATCATCGAATCCAACAGAAGTATATGCATGGCATACTATCCTTT ]
[+] EMBL CD184887 [ AACTTGCAGGACTTTACATGCTCAGCGTGTCACTCAGGTTTCATTGAAGCAATTAGCCCAGGAAGTGGTTTATCATCGAATCCAACAGAAGTATATATCTGTCATTCTAACCTTTATTTATAACAGTTAGATGCAATGCAGATGATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTTTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGATGAGTCATTAGAAAGGGAAAGTTTATCTAGAAGGTCGCGACGATCAACAAGGAATTCAAATCATAGGTCGACACGAGAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTAT CCAGTTATCAAGTGTGGATCATCCATT CAGATTGCCATTCTTATCAAACTTCGGATCAGCTGATGGAGATATGCAAAATTTTGTTTTTAATAGA ]
[-] EMBL CD190497 [ TGATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTTTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGATGAGTCATTAGAAAGGGAAAGTTTATCTAGAAGGTCGCGACGATCAACAAGGAATTCAAATCATAGGTCGACACGAGAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTAT CCAGTTATCAAGTGTGGATCATCCATT CAGATTGCCATTCTTATCAAACTTCGGATCAGCTGATGGAGATATGCAAAATTTTGTTTTTAATAGAGCTATGTTTGACCAGTTTATCACTGTGTTAATGAATGAGTTACAAGT GGGTCCGCCACCCGCCCCAGAATCAGCCATTGCAGACTTACCTACAATTAGTTTGACTGAAGAACAAGCATTAAAGTTGGGTATTTGTTCAATATGCTTTGATGATTTCAAAGAAGCC ]
[+] EMBL CD137483 [ TCAGCTATTTGGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTTTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGATGAGTCATTAGAAAGGGAAAGTTTATCTAGAAGGTCGCGACGATCAACAAGGAATTCAAATCATAGGTCGACACGAGAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTAT CCAGTTATCAAGTGTGGATCATCCATT CAGATTGCCATTCTTATCAAACTTCGGATCAGCTGATGGAGATATGCAAAATTTTGTTTTTAATAGAGCTATGTTTGACCAGTTTATCACTGTGTTAATGAATGAGTTACAAGT GGGTCCGCCACCCGCCCCAGAATCAGCCATTGCAGACTTACCTACAATTAGTTTGACTGAAGAACAAGCATTAAAGTTGGGTATTTGTTCAATATGCTTTGATGATTTCAAAGAATCCGAATCAGTTATCAGACTACCATGTGCTCACACCTACCATCAAACTTGTGTTAC ACATGGTTAAAACAGCACGGGACTTGTCCAGTTTGTCGAAAGGATTTATCCGGACATGA ]
[+] EMBL CD181230 [ GCAAAATTTTGTTTTTAATAGAGCTATGTTTGACCAGTTTATCACTGTGTTAATGAATGAGTTACAAGT GGGTCCGCCACCCGCCCCAGAATCAGCCATTGCAGACTTACCTACAATTAGTTTGACTGAAGAACAAGCATTAAAGTTGGGTATTTGTTCAATATGCTTTGATGATTTCAAAGAATCCGAATCAGTTATCAGACTACCATGTGCTCACACCTACCATCAAACTTGTGTTACAACATGGTTAAAACAGCACGGAACTTGTCCAGTTTGTCGAAAGGATTTATCCGGACATGATACTTCACGATATGAGGATCCCAGCT CAAACTT ]
[-] EMBL CD137684 [ CACTGTGTTAATGAATGAG TACAAGTGGGGTCCGCCACCCGCCCCAGAATCAGCCATTGCAGACTTACCTACAATTAGTTTGACTGAAGAACAAGCATTAAAGTTGGGTATTTGTTCAATATGCTTTGATGATTTCAAAGAATCCGAATCAGTTATCAGACTACCATGTGCTCACACCTACCATCAAACTTGTGTTACAACATGGTTAAAACAGCACGGAACTTGTCCAGTTTGTCGAAAGGATTTATCCGGACATGATACTTCACGATATGAGGAT CCAGCTCCAAACTTAACAGGAAATAGTAATGGTTCAAGCTCTTCCACTTCTTAGTCTTCATTATTCTTTCAATTTTTCTAAAATAAATATAAAACCGTGAATTATATTCATTAAATTTGTCTATTTTCACACAAACACTTCAGAAACAAGCCAGCTATACATATATATATATCCCTCCAGTAAACTGTCGTCGAAGTGTACCAGCGAGATGCTGTATAGTTTCATCATTTTCTCTTTTTTCCTGTCTCTTCCCATTGTGTAGCATATTTTTTTCC ]
[+] EMBL CD126056 [ tatgTCAATATGCTTTGATGATTTCAAAGAATCCGAATCAGTTATCAGACTACCATGTGCTCACACCTACCATCAAACTTGTGTTACAACATGGTTAAAACAGCACGGAACTTGTCCAGTTTGTCGAAAGGATTTATCCGGACATGATACTTCACGATATGAGGAT CCAGCTCCAAACTTAACAGGAAATAGTAATGGTTCAAGCTCTTCCACTTCTTAGTCTTCATTATTCTTTCAATTTTTCTAAAATAAATATAAAACCGTGAATTATATTCATTAAATTTGTCTATTTTCACACAAACACTTCAGAAACAAGCCAGCTATACATATATATATATCC ]
[+] EMBL CD117483 [ ATGTGCTCACACCTACCATCAAACTTGTGTTACAACATGGTTAAAACAGCACGGAACTTGTCCAGTTTGTCGAAAGGATTTATCCGGACATGATACTTCACGATATGAGGAT CCAGCTCCAAACTTAACAGGAAATAGTAATGGTTCAAGCTCTTCCACTTCTTAGTCTTCATTATTCTTTCAATTTTTCTAAAATAAATATAAAACCGGGAATTATATTCATTAAATCTGTCTATTTTCACACAAACACTTCAGAAACAAGCCAGCTATACATATATATATATCCCTCCAGTAAACTGTCGTCGAAGTGTACCAGCGAGATGCTGTATAGTTTCATCATTTTCTCTTTTTTCCTGTCTCTTCCCATTGCGTAACATATTTTTTTCCTTGTGTATGGATGATGAACCCAACCAGCCCTGTG TTA TTATGTGTTTGATAATTTTTTCCCTGTTTTTTTCCAAATCCAACTTTTCTATTAAGATTTATTTTTACCAACATTGTT ]
[-] EMBL CD075551 [ CTTCATATTTCTTTCAATTTTTCTAAAATAAATATAAAACCGTGAATTATATTCATTAAATTTGTCTATTTTCACACAAACACTTCAGAAACAAGCCAGCTATACATATATATATATCCCTCCAGTAAACTGTCGTCGAAGTGTACCAGCGAGATGCTGTATAGTTTCATCATTTTCTCTTTTTTCCTGTCTCTTCCCATTGTGTAGCATATTTTTTTCCTTGTGTATGTATGATGAACCCAACCAGCCCTGTG TTATTT TGTGTTTGATAATTTTTTCCCTGTTTCTTCCAAAATCCAACTTTTTTATTAAGATTTATTTTTACCAAGATTGTTGCATTATCTTACCCAATTAATTTCACACTGACTATTAAATGCATCCATCTTTGTTTTTTTCACTATTATTATTGTTCTTTTATTCACTAGCTTCGTGATATGACTACTACTTGCTTTTTAAGCCCCACTCCACCTTTTGGCAGAAATAAAAGTAAATACTCAGAAGAGGGTTTTTTCATATTTCTCTACTTGTATTGTAGTAATTGTCACTTAATTATCAATCAATAAAAAT]
[+] EMBL CD070511 [ AAAATAAATATAAAACCGTGAATTATATTCATTAAATTTGTCTATTTTCACACAAACACTTCAGAAACAAGCCAGCTATACATATATATATATCCCTCCAGTAAACTGTCGTCGAAGTGTACCAGCGAGATGCTGTATAGTTTCATCATTTTCTCTTTTTTCCTGTCTCTTCCCATTGTGTAGCATATTTTTTTCCTTGTGTATGTATGATGAACCCAACCAGCCCTGTGNNTA TT TGTGTTTGATA ]
[-] EMBL CD120725 [ GTCGTCGAAGTGTACCAGCGAGATGCTGTATAGTTTCATCATTTTCTCTTTTTTCCTGTCTCTTCCCATTGTGTAGCATATTTTTTTCCTTGTGTATGTATGATG ]
consensusID : consensus_11049#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 721 fasta sequence
[CCTCGGGCCAAAAATTCGGCACGAGGCGCAGTATTTAAATTACTTCTAAGCAATGGCAACTGGGAGTTCGGGTGATAGCTACTATTGCCACTCTTGCGAAGCTGAGGTCGTCCCAAAC-TGCA--G-GACTTTACATGCTCAGCGTGTCACTCAGGTTTCA--TTGA-A--GCAATTAGCCCAGGAAGTGGTTTATCATCGAATCCAACAG-AATTAGATGCAATGCAGATGATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTTTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGATGAGTCATTAGAAAGGGAAAGTTTATCTAGAAGGTCGCGACGATCAACAAGGAATTCAAATCATAGGTCGACACGAGAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTATCCAGTTATCAAGTGTGGATCATCCATTCAGATTGCCATTCTTATCAAACTTCGGATCAGCTGATGGAGATATGCAAAATTTTGTTTTTAATAGAGCTATGTTTGACCAGTTTATCACTGTGTTAATGAATGAGTTACAAGTGGGTCCGCCACCCGCCCCAGAATCAGCCATTGCAGACT-TACCTACAATTAGTTTGACTGAAGAACAAGCATTAAAGTTGGNGTATTTGTTCAATATGCTTTGATGATTTCAAAGAATCCGAATCAGTTATCAGACTACCATGT]
[+] EMBL CD081829 [CCTCGGGCCAAAAATTCGGCACGAGGCGCAGTATTTAAATTACTTCTAAGCAATGGCAACTGGGAGTTCGGGTGATAGCTACTATTGCCACTCTTGCGAAGCTGAGGTCGTCCCAAAC T T GACTTTACATGCTCAGCGTGTCACTCAGGTTTCA TTGA A GCAATTAGCCCAGGAAGTGGTTTATCATCGAATCCAACAG AATTAGATGCAATGCAGATGATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTTTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGATGAGTCATTAGAAAGGGAAAGTTTATCTAGAAGGTCGCGACGATCAACAAGGAATTCAAATCATAGGTCGACACGAGAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTATCCAGTTATCAAGTGTGGATCATCCATTCAGATTGCCATTCTTATCAAACTTCGGATCAGCTGATGGAGATATGCAAAATTTTGTTTTTAATAGAGCTATGTTTGACCAGTTTATCACTGTGTTAATGAATGAGTTACAAGTGGGTCCGCCACCCGCCCCAGAATCAGCCATTGCAGACT TACCTACAATTAGTTTGACTGAAGAACAAGCATTAAAGTTGGNGTATTTGTTCAATATGCTTTGATGATTTCAA ]
[+] EMBL CD180943 [ AAATTACTTCTAAGCAATGGCAACTGGGAGTTCGGGTGATAGCTACTATTGCCACTCTTGCGAAGCTGAGGTCGTCCCAAACTTGCA G GACTTTACATGCTCAGCGTGTCACTCAGGTTTCA TTGA A GCAATTAGCCCAGGAAGTGGTTTATCATCGAATCCAACAG AATTAGATGCAATGCAGATGATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTTTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGATGAGTCATTAGAAAGGGAAAGTTTATCTAGAAGGTCGCGACGATCAACAAGGAATTCAAATCATAGGTCGACACGAGAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTATCCAGTTATCAAGTGTGGATCATCCATTCAGAT ]
[+] EMBL CD150684 [ TCGGGTGATAGCTACTATTGCCACTCTTGCGAAGCTGAGGTCGTCCCAAACTTGCA G GACTTTACAAGCTCAGCGTGTCACTCAGGTTTCA TTGA A GCAATTAGCCCAGGAAGTGGTTTATCATCGAATCCAACAG AATTAGATGCAATGCAGATGATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTTTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGATGAGTCATTAGAAAGGGAAAGTTTATCTAGAAGGTCGCGACGATCAACAAGGAATTCAAATCATA ]
[+] EMBL CD127825 [ ACTCTTGCGAAGCTGAGGTCGTCCCAAACTTGCA G GACTTTACATGCTCAGCGTGTCACTCAGGTTTCA TTGA A GCAATTAGCCCAGGAAGTGGTTTATCATCGAATCCAACAG AATTAGATGCAATGCAGATGATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTTTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGATGAGTCATTAGAAAGGGAAAGTATATCTAGAAGGTCGCGACGATCAACAAGGAATTCAAATCATAGGTCGACACGAGAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTCTTTCCACTCGTATCCAGTTATCAAGTGTGGATCATCCATTCAGGTTGCCATTCTTATCAAACTTCGGATCAGCTGATGGAGATATGCAAAATTTTGTTTTTAATAGAGCTATGTTTGACCAGTTTATCACTGTGTTAATGAATGAGTTACAAGTGGGTCCGCCACCCGCCCCAGAATCAGCCA ]
[+] EMBL CD181599 [ AAACTTGCA G GACTTTACATGCTCAGCGTGTCACTCAGGTTTCA TTGA A GCAATTAGCCCAGGAAGTGGTTTATCATCGAATCCAACAG AATTAGATGCAATGCAGATGATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTTTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGATGAGTCATTAGAAAGGGAAAGTTTATCTAGAAGGTCGCGACGATCAACAAGGAATTCAAATCATAGGTCGACACGAGAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTATCCAGTTATCAAGTGTGGATCATCCATTCAGATTGCCATTTCTATC ]
[-] EMBL CD181296 [ AAC TGCAG G GACTTTACATGCTCAGCGTGTCACTCAGGNTTCA TGANN GCAATTAGCCCAGGAAGTGGTTTATCATCGAATCCAACAG AATTAGATGCAATGCAGATGATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTTTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGATGAGTCATTAGAAAGGGAAAGTTTATCTAGAAGGTCGCGACGATCAACAAGGAATTCAAATCATAGGTCGACACGAGAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTATCCAGTTATCAAGTGTGGATCATCCATTCAGATTGCCATTCTTATCA ]
[-] EMBL CD181342 [ AAC TGCA GNNACTTTACATGCTCAGCGTGTCACTCAGGTTTCA TTGA A GCNAATAGCCCAGGAAGTGGTTTATCATCGAATCCAACAG AATTAGATGCAATGCAGATGATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTNTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGATGAGTCATTAGAAAGGGAAAGTTTATCTAGAAGGTCGCGCCGATCAACAAGGAATTCAAATCATAGGTCGACACGAGAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTATCCAGTTATCAAGTGTGGATCATCCATTCAGATTGCCATTCTTATCA ]
[-] EMBL CD181291 [ AAC TGCA GNNACTTTACATGCTCAGCGTGTCACTCAGGTTTCA TTGA A GCNAATAGCCCAGNAAGTGGTTTATCATCGAATCCAACAG AATTAGATGCAATGCAGATGATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTTTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGATGAGTCATTAGAAAGGGAAAGTTTATCTAGAAGGTCGCGACGATCAACAAGGAATTCAAATCATAGGTCGACACGAGAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTATCCAGTTATCAAGTGTGGATCATCCATTCAGATTGCCATTCTTATCA ]
[-] EMBL CD181484 [ AAC TGCAN G GACTTTACATGCTCAGCGTGTCACTCAGG TTCA TGA ANNGCAATTAGCCCAGGAAGTGGTTTATCATCGAATCCAACAG AATTAGATGCAATGCAGATGATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTTTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGATGAGTCATTAGAAAGGGAAAGTTTATCTAGAAGGTCGCGACGATCAACAAGGAATTCAAATCATAGGTCGACACGAGAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTATCCAGTTATCAAGTGTGGATCATCCATTCAGATTGCCATTCTTATCA ]
[-] EMBL CD181389 [ AC TGCAGGG GACTTTACATGCTCAGCGTGTCACTCAG TTCANNTNGA A GCAA TAGCCC CAGGTGGTTTATCATCGAATCCANCAG AATTAGATGCAATGCAGATGATAGGTCAGCTATTGNGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTTTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGATGAGTCATTAGAAAGGGAAAGTTTATCTAGAAGGTCGCGACGATCAACAAGGAATTCAAATCATAGGTCGACACGAGAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTATCCAGTTATCAAGTGTGGATCATCCATTCAGATTGCCATTCTTATCA ]
[-] EMBL CD181428 [ act TGCA GACTTTACATGCTCAGCGTGTCACTCAGGTTTCA TGNA A GC ATTAGCCCAGGAAGTGGTTTATCATCGAATCC ACAGAAATTAGATGCAATGCTGATGATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTTTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGATGAGTCATTAGAAAGGGAAAGTTTATCTAGAAGGTCGCGACGATCAACAAGGAATTCAAATCATAGGTCGACACGAGAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTATCCAGTTATCAAGTGTGGATCATCCATTCAGATTGCCATTCTTATCA ]
[+] EMBL CD158956 [ TATCCCATGAAGTGGTTTATCATCGAATCCAACGG AATTAGATGCAGTGCATATGATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTTTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGATGAGCCATTATAAAGGGAAAGTTTATCTATAAGGTCGCGACGATCAACAAGGAATTCACATCATATGTCGACACGATAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTATCCAGTTATCAAGTGTGGATCATCCATTCAGATTGCCATTCTTATCAAACTTCGGATCAGCTGATGGAGATATGCAAAATTTTGTTTTTAATAGAGCTATGTTTGACCAGTTTATCACTGTGTTAATGAATGAGTTACAAGTGGGTCCGCCACCCGCCCCAGAATCAGCCATTGCAGACT TACCTACAATTAGTTTGACTGAAGAACAAGCATTACAGTTGG GTATTTGATCAATATGCTTTGATGATTTCAAAGAATCCGAATCAGTTATCAGACTACCATGT]
[+] EMBL CD137683 [ TAGCCCAGGAAGTGGTTTATCATCGAATCCAACAG AATTAGATGCAATGCAGATGATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTTTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGGTGAGTCATTAGAAAGGGAAAGTTTATCTAGAAGGTCGCGACGATCAACAAGGAATTCAAATCATAGGTCGACGCGAGAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTATCCAGTTATCAAGTGTGGATCATCCATTCAGATTGCCATTCTTATCAAACTTCGGATCAGCTGATGGAGATATGCAAAATTTTGTTTTTAATAGAGCTATGTTTGACCAGTTTATCACTGTGTTAATGAATGAGTTACAAGTGGGTCCGCCACCCGCCCCAGAATCAGCCATTGCAGACTNTACCTAC ATTAGTTT ]
[+] EMBL CD066527 [ TTATCATCGAATCCAACAG AATTAGATGCAATGCACATGATAGGTCAGCTATTTGGAGGTTCGCTTAACGATAATTTTGTTCGCTATTTTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGATGAGTCATTATAAAGGGAAAGTTTATCTAGAAGGTCGCGACGATCAACAAGGAATTCAAATCATAGGTCGACACGAGAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTATCCAGTTATCAAGTGTGGATCATCCATTCAGATTGCCATTCTTATCAAACTTCGGATCAGCTGATGGAGATATGCAAAATTTTGTTTTTAATAGAGCTA ]
consensusID : consensus_11049#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 509 fasta sequence
[TCATTAAACTTGGTCTATGTTTCACACAAACACTTCAGAAACGAGCCAGCTATACATATATATATATCCGTCCAGGTAAACTGTCGTCGAAGTTGTACCAGCGGAGATGCTTGTATAGTTTCATCATTTTCTCCTTTTTCCTGGTCTCTTCCCATTGTGTAGCATATTTTTTTTCCTGTGTATGTATGATGAACCCAACCAGCGCTGTGTTATTTTGTGTTTGATAATTTTCTCCCTGTTTCTTGCAAAATCCAACTTTTCTATTAAGATTTATTTTTACCAAGATTGTTGCATTATCTTACGCAATTAATTTCACACGGACTATTAAATGCATCCATCTGTGTTTTTTTCAACAATAATAATGGTGCTTTTATCACGAGCTTCGTGATATGACTACTACTTTGCTTTCTAAGCCCACTCCACCTTTTGGCAGAAATAAAGTAATACTCAGAGAGGGTTTTTCATATTCTCTACTGGAATGTAGTATTGGCACTTATTATCATCATAAA]
[+] EMBL AI739697 [TCATTAAACTTGGTCTATGTTTCACACAAACACTTCAGAAACGAGCCAGCTATACATATATATATATCCGTCCAGGTAAACTGTCGTCGAAGTTGTACCAGCGGAGATGCTTGTATAGTTTCATCATTTTCTCCTTTTTCCTGGTCTCTTCCCATTGTGTAGCATATTTTTTTTCCTGTGTATGTATGATGAACCCAACCAGCGCTGTGTTATTTTGTGTTTGATAATTTTCTCCCTGTTTCTTGCAAAATCCAACTTTTCTATTAAGATTTATTTTTACCAAGATTGTTGCATTATCTTACGCAATTAATTTCACACGGACTATTAAATGCATCCATCTGTGTTTTTTTCAACAATAATAATGGTGCTTTTATCACGAGCTTCGTGATATGACTACTACTTTGCTTTCTAAGCCCACTCCACCTTTTGGCAGAAATAAAGTAATACTCAGAGAGGGTTTTTCATATTCTCTACTGGAATGTAGTATTGGCACTTATTATCATCATAAA]
consensusID : consensus_11049#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 438 fasta sequence
[TCGGGTGTTACCTACTATTGCCACTCTTGCGAAGCTGAGGTCGTCCCAAACTTGCAGGTTATTTTAAAATAACGTTCGCTAATTATTGTTCAGGACTTTACATGCTCAGCGTGTCACTCAGGTTTCATTGAAGCAATTAGCCCAGGAAGTGGTTTATCATCGAATCCAACAGAATTAGATGCAATGCAGATGATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTTTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGATGAGTCATTAGAAAGGGAAAGTTTATCTAGAAGGTCGCGACGATCAACAAGGAATTCAAATCATAGGTCGACACGAGAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTATCCAGTTATCAAGTGTGGATCATCCATTCAGA]
[+] EMBL CD144504 [TCGGGTGTTACCTACTATTGCCACTCTTGCGAAGCTGAGGTCGTCCCAAACTTGCAGGTTATTTTAAAATAACGTTCGCTAATTATTGTTCAGGACTTTACATGCTCAGCGTGTCACTCAGGTTTCATTGAAGCAATTAGCCCAGGAAGTGGTTTATCATCGAATCCAACAGAATTAGATGCAATGCAGATGATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTTTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGATGAGTCATTAGAAAGGGAAAGTTTATCTAGAAGGTCGCGACGATCAACAAGGAATTCAAATCATAGGTCGACACGAGAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTATCCAGTTATCAAGTGTGGATCATCCATTCAGA]
consensusID : consensus_11049#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 359 fasta sequence
[ACGTTAACCAAGGCGTTTGCTTGGTGGTGTCTGACTTTGAATCATCATTTGCGTCTCGAGAGACTGCTATGTAAGCGCAGGTAATGTTAAGTGTTGGGTACTAGGTACTTATACCAAAATAATCGATGTAGTTGTGAATATTCATCGGCTGAAGTGACTGGGACAAAACAGAACGTTATTAAACATCCCACGGTTATCTAATTTAAGAGCTTGAAGTGACGAAATTACTATATAACTAATAAGAACATGTCTCCGTATGCATAACTGGCCGTTTTCTTTTTTAGCTATGTTTGACCAGTTTATCACTGTGTTAATGAATGAGTTACAAGTGGGTCCGCCACCCGCCCCAGAATCAGCCA]
[+] EMBL CD127156 [ACGTTAACCAAGGCGTTTGCTTGGTGGTGTCTGACTTTGAATCATCATTTGCGTCTCGAGAGACTGCTATGTAAGCGCAGGTAATGTTAAGTGTTGGGTACTAGGTACTTATACCAAAATAATCGATGTAGTTGTGAATATTCATCGGCTGAAGTGACTGGGACAAAACAGAACGTTATTAAACATCCCACGGTTATCTAATTTAAGAGCTTGAAGTGACGAAATTACTATATAACTAATAAGAACATGTCTCCGTATGCATAACTGGCCGTTTTCTTTTTTAGCTATGTTTGACCAGTTTATCACTGTGTTAATGAATGAGTTACAAGTGGGTCCGCCACCCGCCCCAGAATCAGCCA]
consensusID : consensus_11049#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 132 fasta sequence
[AGGATCCAGCTCCAAACTTAACAGGAAATAGTAATGGTTCAAGCTCTTCCACTTCTTAGTCCTTCAATATTCTTTCCAATTTTTCTTAAATAGAATATAAAACCGTGGAATTATATCCATTTAAAATTGTAC]
[+] EMBL AW061404 [AGGATCCAGCTCCAAACTTAACAGGAAATAGTAATGGTTCAAGCTCTTCCACTTCTTAGTCCTTCAATATTCTTTCCAATTTTTCTTAAATAGAATATAAAACCGTGGAATTATATCCATTTAAAATTGTAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11049#1 ------------------------------------------------------------
consensus_11049#3 ------------------------------------------------------------
consensus_11049#0 AAACTTGCAGGACTTTACATGCTCAGCGTGTCACTCAGGTTTCATTGAAGCAATTAGCCC 60
consensus_11049#2 ------------------------------------------------------------
consensus_11049#5 ------------------------------------------------------------
consensus_11049#4 ------------------------------------------------------------
consensus_11049#1 ------------------------------------------------------------
consensus_11049#3 ------------------------------------------------------------
consensus_11049#0 AGGAAGTGGTTTATCATCGAATCCAACAGAAGTATATATCTGTCATTCTAACCTTTATTT 120
consensus_11049#2 ------------------------------------------------------------
consensus_11049#5 ------------------------------------------------------------
consensus_11049#4 ------------------------------------------------------------
consensus_11049#1 ------------------------------------------------------------
consensus_11049#3 ------------------------------------------------------------
consensus_11049#0 ATAACAGTTAGATGCAATGCAGATGATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAA 180
consensus_11049#2 ------------------------------------------------------------
consensus_11049#5 ------------------------------------------------------------
consensus_11049#4 ------------------------------------------------------------
consensus_11049#1 ------------------------------------------------------------
consensus_11049#3 ------------------------------------------------------------
consensus_11049#0 TTTTGTTCGCTATTTTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGATGAGTCATT 240
consensus_11049#2 ------------------------------------------------------------
consensus_11049#5 ------------------------------------------------------------
consensus_11049#4 ------------------------------------------------------------
consensus_11049#1 ------------------------------------------------------------
consensus_11049#3 ------------------------------------------------------------
consensus_11049#0 AGAAAGGGAAAGTTTATCTAGAAGGTCGCGACGATCAACAAGGAATTCAAATCATAGGTC 300
consensus_11049#2 ------------------------------------------------------------
consensus_11049#5 ------------------------------------------------------------
consensus_11049#4 ------------------------------------------------------------
consensus_11049#1 ------------------------------------------------------------
consensus_11049#3 ------------------------------------------------------------
consensus_11049#0 GACACGAGAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTAT 360
consensus_11049#2 ------------------------------------------------------------
consensus_11049#5 ------------------------------------------------------------
consensus_11049#4 ------------------------------------------------------------
consensus_11049#1 ------------------------------------------------------------
consensus_11049#3 ------------------------------------------------------------
consensus_11049#0 CCAGTTATCAAGTGTGGATCATCCATTCAGATTGCCATTCTTATCAAACTTCGGATCAGC 420
consensus_11049#2 ------------------------------------------------------------
consensus_11049#5 ------------------------------------------------------------
consensus_11049#4 ------------------------------------------------------------
consensus_11049#1 ------------------------------------------------------------
consensus_11049#3 ------------------------------------------------------------
consensus_11049#0 TGATGGAGATATGCAAAATTTTGTTTTTAATAGAGCTATGTTTGACCAGTTTATCACTGT 480
consensus_11049#2 ------------------------------------------------------------
consensus_11049#5 ------------------------------------------------------------
consensus_11049#4 ------------------------------------------------------------
consensus_11049#1 ------------------------------------------------------------
consensus_11049#3 ------------------------------------------------------------
consensus_11049#0 GTTAATGAATGAGTTACAAGTGGGTCCGCCACCCGCCCCAGAATCAGCCATTGCAGACTT 540
consensus_11049#2 ------------------------------------------------------------
consensus_11049#5 ------------------------------------------------------------
consensus_11049#4 ------------------------------------------------------------
consensus_11049#1 ------------------------------------------------------------
consensus_11049#3 ------------------------------------------------------------
consensus_11049#0 ACCTACAATTAGTTTGACTGAAGAACAAGCATTAAAGTTGGGTATTTGTTCAATATGCTT 600
consensus_11049#2 ------------------------------------------------------------
consensus_11049#5 ------------------------------------------------------------
consensus_11049#4 ------------------------------------------------------------
consensus_11049#1 ------------------------------------------------------------
consensus_11049#3 ------------------------------------------------------------
consensus_11049#0 TGATGATTTCAAAGAATCCGAATCAGTTATCAGACTACCATGTGCTCACACCTACCATCA 660
consensus_11049#2 ------------------------------------------------------------
consensus_11049#5 ------------------------------------------------------------
consensus_11049#4 ------------------------------------------------------------
consensus_11049#1 ------------------------------------------------------------
consensus_11049#3 ------------------------------------------------------------
consensus_11049#0 AACTTGTGTTACAACATGGTTAAAACAGCACGGAACTTGTCCAGTTTGTCGAAAGGATTT 720
consensus_11049#2 ------------------------------------------------------------
consensus_11049#5 ------------------------------------------------------------
consensus_11049#4 ------------------------------------------------------------
consensus_11049#1 ------------------------------------------------------------
consensus_11049#3 ------------------------------------------------------------
consensus_11049#0 ATCCGGACATGATACTTCACGATATGAGGATCCAGCTCAAACTTAACAGGAAATAGTAAT 780
consensus_11049#2 ------------------------------------------------------------
consensus_11049#5 ------------------------------------------------------------
consensus_11049#4 ------------------------------------------------------------
consensus_11049#1 -------------------CCTCGGGCCAAAAATTCGGCACGAGGCGCAGTATTTAAATT 41
consensus_11049#3 ----------------------------------TCGG-GTGTTACCTACTATTGCCACT 25
consensus_11049#0 GGTTCAAGCTCTTCCACTTCTTAGTCTTCATTATTCTTTCAATTTTTCTAAAATAAATAT 840
consensus_11049#2 ------------------------------------------------------------
consensus_11049#5 ------------------------------------------------------------
consensus_11049#4 ------------------------------------------------------------
consensus_11049#1 ACTTCTAAGCAATGGCAACTGGGAGTTCGGGTGATAGCTACTATTGCCACTCTTGCGAAG 101
consensus_11049#3 CTTGCGAAGCTGAGGTCGTCCCAAACTTGCAGGTTATTT--TAAAATAACGTTCGCTAAT 83
consensus_11049#0 AAAACCGTGAATTATATTCATTAAATTTG-TCTAT-TTTCACACAAACACTTCAGAAACA 898
consensus_11049#2 -----------------TCATTAAACTTGGTCTATGTTTCACACAAACACTTCAGAAACG 43
consensus_11049#5 ------------------------------------------------------------
consensus_11049#4 ------------------------------------------ACGTTAACCAAGGCGTTT 18
consensus_11049#1 CTGAGGTCGTCCCAAACTGCAGGACTTTACATGCTCAGCGTGTCACTCAGGTTTCATTGA 161
consensus_11049#3 T----ATTGTTC--------AGGACTTTACATGCTCAGCGTGTCACTCAGGTTTCATTGA 131
consensus_11049#0 AGCCAGCTATACATATATATATATCCCTCCAG---TAAACTGTCGTCGAAGT-GTACCAG 954
consensus_11049#2 AGCCAGCTATACATATATATATATCCGTCCAGG--TAAACTGTCGTCGAAGTTGTACCAG 101
consensus_11049#5 ------------------------------------------------------------
consensus_11049#4 GCTTGGTGGTGTCTGACTTTGAATCATCATTTGCGTCTCGAGAGACT---GCTATGTAAG 75
consensus_11049#1 AGCAATTAGCCCAGGAAGTGGTTTATCATCGAATCCAACAGAATTAGATGCAATGCAGAT 221
consensus_11049#3 AGCAATTAGCCCAGGAAGTGGTTTATCATCGAATCCAACAGAATTAGATGCAATGCAGAT 191
consensus_11049#0 CG-AGATGCT-GTATAGTTTCATCATTTTCTCTTTTTTCCTG-TCTCTTCCCATTGTGTA 1011
consensus_11049#2 CGGAGATGCTTGTATAGTTTCATCATTTTCTCCTTTTTCCTGGTCTCTTCCCATTGTGTA 161
consensus_11049#5 ------------------------------------------------------------
consensus_11049#4 CGCAGGTAATGTTAAGTGTTGGGTACTAGGTACTTATACCAAAATAATCGATGTAGTTGT 135
consensus_11049#1 GATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTTTGCAGCACC 281
consensus_11049#3 GATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTTTGCAGCACC 251
consensus_11049#0 GCATATTTTTTTCCTTGTGTATGTATGATGAACCCAACCAGCCCTGTGTTATTT-GTGTT 1070
consensus_11049#2 GCATATTTTTTTTCCTGTGTATGTATGATGAACCCAACCAGCGCTGTGTTATTTTGTGTT 221
consensus_11049#5 ------------------------------------------------------------
consensus_11049#4 GAATATTCATCGGCTGAAGTG-----ACTGGGACAAAACAGAACGTTATTAAACATCCCA 190
consensus_11049#1 TAGAGATGATCTT--AGTTCAACAGATGAT-GAGTCATT---AGA--AAGGGAAAGTTTA 333
consensus_11049#3 TAGAGATGATCTT--AGTTCAACAGATGAT-GAGTCATT---AGA--AAGGGAAAGTTTA 303
consensus_11049#0 TGATAATTTTTTCCCTGTTTTTTTCCAAATCCAACTTTTCTATTA--AGATTTATTTTTA 1128
consensus_11049#2 TGATAATTTTCTCCCTGTTTCTTGCAAAATCCAACTTTTCTATTA--AGATTTATTTTTA 279
consensus_11049#5 -AGGATCCAGCTCCAAACTTAACAGGAAATAGTAATGGT---TCA--AGCTCTTCCACTT 54
consensus_11049#4 CGGTTATCTAATTTAAGAGCTTGAAGTGACGAAATTACTATATAACTAATAAGAACATGT 250
* * * * *
consensus_11049#1 TCTAGAAGGTCGCGACGATCAACAAGGAATTC--AAATCATAGGTCGACACGAGAACGTG 391
consensus_11049#3 TCTAGAAGGTCGCGACGATCAACAAGGAATTC--AAATCATAGGTCGACACGAGAACGTG 361
consensus_11049#0 CCAACATTGTTGCATTATCTTACCCAATTAAT--TTCACACTGACTATTAAATGCATCCA 1186
consensus_11049#2 CCAAGATTGTTGCATTATCTTACGCAATTAAT--TTCACACGGACTATTAAATGCATCCA 337
consensus_11049#5 CTTAG--TCCTTCAATATTCTTTCCAATTTTT--CTTAAATAGAATATAAAAC-CGTGGA 109
consensus_11049#4 CTCCGTATGCATAACTGGCCGTTTTCTTTTTTAGCTATGTTTGACCAGTTTATCACTGTG 310
*
consensus_11049#1 TGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTATCCAGTTATCAAGTG 451
consensus_11049#3 TGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTATCCAGTTATCAAGTG 421
consensus_11049#0 TCTTTGTTTTTTTCACTATTATTATTGTTCTTTTATTCACTAGCTTCGTGATATGACTAC 1246
consensus_11049#2 TCTGTGTTTTTTTCAACAATAATAATGGTGCTTTTATCACGAGCTTCGTGATATGACTAC 397
consensus_11049#5 ATTATATCCATTTAA--AATTGTAC----------------------------------- 132
consensus_11049#4 TTAATGAATGAGTTACAAGTGGGTCCGCCACCCGCCCCAGAATCAGCCA----------- 359
* * *
consensus_11049#1 TGGATCATCCATTCAGATT-GCCATTCTTATCAAACTTCGGATCAGCTGATGGAGATATG 510
consensus_11049#3 TGGATCATCCATTCAGA------------------------------------------- 438
consensus_11049#0 TACTT-GCTTTTTAAGCCCCACTCCACCTTTTGGCAGAAATAAAAGTAAATACTCAGAAG 1305
consensus_11049#2 TACTTTGCTTTCTAAGCCC-ACTCCACCTTTTGGCAGAAATAAAG--TAATACTCAGAGA 454
consensus_11049#5 ------------------------------------------------------------
consensus_11049#4 ------------------------------------------------------------
consensus_11049#1 CAAAATTTTGTTTTTAATAGAGCTATGTTTGACCAGTTTATCACTGTGTTAATGAATGAG 570
consensus_11049#3 ------------------------------------------------------------
consensus_11049#0 AGGGTTTTTTCATATTTCTCTACTTGTATTGTAGTAATTGTCACTTAATTATCAATCAAT 1365
consensus_11049#2 GGG--TTTTTCATATT-CTCTACTGGAAT-GTAGTA-TTGGCACTTA-TTATCATC--AT 506
consensus_11049#5 ------------------------------------------------------------
consensus_11049#4 ------------------------------------------------------------
consensus_11049#1 TTACAAGTGGGTCCGCCACCCGCCCCAGAATCAGCCATTGCAGACTTACCTACAATTAGT 630
consensus_11049#3 ------------------------------------------------------------
consensus_11049#0 AAAAAT------------------------------------------------------ 1371
consensus_11049#2 AAA--------------------------------------------------------- 509
consensus_11049#5 ------------------------------------------------------------
consensus_11049#4 ------------------------------------------------------------
consensus_11049#1 TTGACTGAAGAACAAGCATTAAAGTTGGNGTATTTGTTCAATATGCTTTGATGATTTCAA 690
consensus_11049#3 ------------------------------------------------------------
consensus_11049#0 ------------------------------------------------------------
consensus_11049#2 ------------------------------------------------------------
consensus_11049#5 ------------------------------------------------------------
consensus_11049#4 ------------------------------------------------------------
consensus_11049#1 AGAATCCGAATCAGTTATCAGACTACCATGT 721
consensus_11049#3 -------------------------------
consensus_11049#0 -------------------------------
consensus_11049#2 -------------------------------
consensus_11049#5 -------------------------------
consensus_11049#4 -------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||