These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11049#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1371 fasta sequence [AAACTTGCAGGACTTTACATGCTCAGCGTGTCACTCAGGTTTCATTGAAGCAATTAGCCCAGGAAGTGGTTTATCATCGAATCCAACAGAAGTATATATCTGTCATTCTAACCTTTATTTATAACAGTTAGATGCAATGCAGATGATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTTTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGATGAGTCATTAGAAAGGGAAAGTTTATCTAGAAGGTCGCGACGATCAACAAGGAATTCAAATCATAGGTCGACACGAGAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTAT-CCAGTTATCAAGTGTGGATCATCCATT-CAGATTGCCATTCTTATCAAACTTCGGATCAGCTGATGGAGATATGCAAAATTTTGTTTTTAATAGAGCTATGTTTGACCAGTTTATCACTGTGTTAATGAATGAGTTACAAGT-GGGTCCGCCACCCGCCCCAGAATCAGCCATTGCAGACTTACCTACAATTAGTTTGACTGAAGAACAAGCATTAAAGTTGGGTATTTGTTCAATATGCTTTGATGATTTCAAAGAATCCGAATCAGTTATCAGACTACCATGTGCTCACACCTACCATCAAACTTGTGTTACAACATGGTTAAAACAGCACGGAACTTGTCCAGTTTGTCGAAAGGATTTATCCGGACATGATACTTCACGATATGAGGAT-CCAGCT-CAAACTTAACAGGAAATAGTAATGGTTCAAGCTCTTCCACTTCTTAGTCTTCATTATTCTTTCAATTTTTCTAAAATAAATATAAAACCGTGAATTATATTCATTAAATTTGTCTATTTTCACACAAACACTTCAGAAACAAGCCAGCTATACATATATATATATCCCTCCAGTAAACTGTCGTCGAAGTGTACCAGCGAGATGCTGTATAGTTTCATCATTTTCTCTTTTTTCCTGTCTCTTCCCATTGTGTAGCATATTTTTTTCCTTGTGTATGTATGATGAACCCAACCAGCCCTGTG-TTA-TT-TGTGTTTGATAATTTTTTCCCTGTTTTTTTCCAAATCCAACTTTTCTATTAAGATTTATTTTTACCAACATTGTTGCATTATCTTACCCAATTAATTTCACACTGACTATTAAATGCATCCATCTTTGTTTTTTTCACTATTATTATTGTTCTTTTATTCACTAGCTTCGTGATATGACTACTACTTGCTTTTTAAGCCCCACTCCACCTTTTGGCAGAAATAAAAGTAAATACTCAGAAGAGGGTTTTTTCATATTTCTCTACTTGTATTGTAGTAATTGTCACTTAATTATCAATCAATAAAAAT] [+] EMBL CD181324 [AAACTT GACTTTGCATGCTCAGCGTGTCACTCAGGTTTCATTGAAGCAATTAGCCCAGGAAGTGGTTTATCATCGAATCCAACAGAAGTATATATCTGTCATTCTAACCTTTATTTATAACAGTTAGATGCAATGCAGATGATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAATTTCGTTCGCTATTTTGCAGCACCTAGAGATAATCTTAGTTCAACAGATGATGAGTCATTAGAAAGGGAAAGTTTATCTAGAAGGTCGCGACGATCAACAAGGAATTCAAATCATAGGTCGACACGAGAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTTCACTCGTATCCCAG TATCAAGTGTGGATCATCCATTACAGA TG CATTNCTAT ] [+] EMBL CD181322 [AAACTTGCAGGACTTTACATGCTCAGCGTGTCACTCAGGTTTCATTGAAGCAATTAGCCCAGGAAGTGGTTTATCATCGAATCCAACAGAAGTATATGCATGGCATACTATCCTTT ] [+] EMBL CD184887 [ AACTTGCAGGACTTTACATGCTCAGCGTGTCACTCAGGTTTCATTGAAGCAATTAGCCCAGGAAGTGGTTTATCATCGAATCCAACAGAAGTATATATCTGTCATTCTAACCTTTATTTATAACAGTTAGATGCAATGCAGATGATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTTTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGATGAGTCATTAGAAAGGGAAAGTTTATCTAGAAGGTCGCGACGATCAACAAGGAATTCAAATCATAGGTCGACACGAGAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTAT CCAGTTATCAAGTGTGGATCATCCATT CAGATTGCCATTCTTATCAAACTTCGGATCAGCTGATGGAGATATGCAAAATTTTGTTTTTAATAGA ] [-] EMBL CD190497 [ TGATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTTTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGATGAGTCATTAGAAAGGGAAAGTTTATCTAGAAGGTCGCGACGATCAACAAGGAATTCAAATCATAGGTCGACACGAGAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTAT CCAGTTATCAAGTGTGGATCATCCATT CAGATTGCCATTCTTATCAAACTTCGGATCAGCTGATGGAGATATGCAAAATTTTGTTTTTAATAGAGCTATGTTTGACCAGTTTATCACTGTGTTAATGAATGAGTTACAAGT GGGTCCGCCACCCGCCCCAGAATCAGCCATTGCAGACTTACCTACAATTAGTTTGACTGAAGAACAAGCATTAAAGTTGGGTATTTGTTCAATATGCTTTGATGATTTCAAAGAAGCC ] [+] EMBL CD137483 [ TCAGCTATTTGGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTTTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGATGAGTCATTAGAAAGGGAAAGTTTATCTAGAAGGTCGCGACGATCAACAAGGAATTCAAATCATAGGTCGACACGAGAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTAT CCAGTTATCAAGTGTGGATCATCCATT CAGATTGCCATTCTTATCAAACTTCGGATCAGCTGATGGAGATATGCAAAATTTTGTTTTTAATAGAGCTATGTTTGACCAGTTTATCACTGTGTTAATGAATGAGTTACAAGT GGGTCCGCCACCCGCCCCAGAATCAGCCATTGCAGACTTACCTACAATTAGTTTGACTGAAGAACAAGCATTAAAGTTGGGTATTTGTTCAATATGCTTTGATGATTTCAAAGAATCCGAATCAGTTATCAGACTACCATGTGCTCACACCTACCATCAAACTTGTGTTAC ACATGGTTAAAACAGCACGGGACTTGTCCAGTTTGTCGAAAGGATTTATCCGGACATGA ] [+] EMBL CD181230 [ GCAAAATTTTGTTTTTAATAGAGCTATGTTTGACCAGTTTATCACTGTGTTAATGAATGAGTTACAAGT GGGTCCGCCACCCGCCCCAGAATCAGCCATTGCAGACTTACCTACAATTAGTTTGACTGAAGAACAAGCATTAAAGTTGGGTATTTGTTCAATATGCTTTGATGATTTCAAAGAATCCGAATCAGTTATCAGACTACCATGTGCTCACACCTACCATCAAACTTGTGTTACAACATGGTTAAAACAGCACGGAACTTGTCCAGTTTGTCGAAAGGATTTATCCGGACATGATACTTCACGATATGAGGATCCCAGCT CAAACTT ] [-] EMBL CD137684 [ CACTGTGTTAATGAATGAG TACAAGTGGGGTCCGCCACCCGCCCCAGAATCAGCCATTGCAGACTTACCTACAATTAGTTTGACTGAAGAACAAGCATTAAAGTTGGGTATTTGTTCAATATGCTTTGATGATTTCAAAGAATCCGAATCAGTTATCAGACTACCATGTGCTCACACCTACCATCAAACTTGTGTTACAACATGGTTAAAACAGCACGGAACTTGTCCAGTTTGTCGAAAGGATTTATCCGGACATGATACTTCACGATATGAGGAT CCAGCTCCAAACTTAACAGGAAATAGTAATGGTTCAAGCTCTTCCACTTCTTAGTCTTCATTATTCTTTCAATTTTTCTAAAATAAATATAAAACCGTGAATTATATTCATTAAATTTGTCTATTTTCACACAAACACTTCAGAAACAAGCCAGCTATACATATATATATATCCCTCCAGTAAACTGTCGTCGAAGTGTACCAGCGAGATGCTGTATAGTTTCATCATTTTCTCTTTTTTCCTGTCTCTTCCCATTGTGTAGCATATTTTTTTCC ] [+] EMBL CD126056 [ tatgTCAATATGCTTTGATGATTTCAAAGAATCCGAATCAGTTATCAGACTACCATGTGCTCACACCTACCATCAAACTTGTGTTACAACATGGTTAAAACAGCACGGAACTTGTCCAGTTTGTCGAAAGGATTTATCCGGACATGATACTTCACGATATGAGGAT CCAGCTCCAAACTTAACAGGAAATAGTAATGGTTCAAGCTCTTCCACTTCTTAGTCTTCATTATTCTTTCAATTTTTCTAAAATAAATATAAAACCGTGAATTATATTCATTAAATTTGTCTATTTTCACACAAACACTTCAGAAACAAGCCAGCTATACATATATATATATCC ] [+] EMBL CD117483 [ ATGTGCTCACACCTACCATCAAACTTGTGTTACAACATGGTTAAAACAGCACGGAACTTGTCCAGTTTGTCGAAAGGATTTATCCGGACATGATACTTCACGATATGAGGAT CCAGCTCCAAACTTAACAGGAAATAGTAATGGTTCAAGCTCTTCCACTTCTTAGTCTTCATTATTCTTTCAATTTTTCTAAAATAAATATAAAACCGGGAATTATATTCATTAAATCTGTCTATTTTCACACAAACACTTCAGAAACAAGCCAGCTATACATATATATATATCCCTCCAGTAAACTGTCGTCGAAGTGTACCAGCGAGATGCTGTATAGTTTCATCATTTTCTCTTTTTTCCTGTCTCTTCCCATTGCGTAACATATTTTTTTCCTTGTGTATGGATGATGAACCCAACCAGCCCTGTG TTA TTATGTGTTTGATAATTTTTTCCCTGTTTTTTTCCAAATCCAACTTTTCTATTAAGATTTATTTTTACCAACATTGTT ] [-] EMBL CD075551 [ CTTCATATTTCTTTCAATTTTTCTAAAATAAATATAAAACCGTGAATTATATTCATTAAATTTGTCTATTTTCACACAAACACTTCAGAAACAAGCCAGCTATACATATATATATATCCCTCCAGTAAACTGTCGTCGAAGTGTACCAGCGAGATGCTGTATAGTTTCATCATTTTCTCTTTTTTCCTGTCTCTTCCCATTGTGTAGCATATTTTTTTCCTTGTGTATGTATGATGAACCCAACCAGCCCTGTG TTATTT TGTGTTTGATAATTTTTTCCCTGTTTCTTCCAAAATCCAACTTTTTTATTAAGATTTATTTTTACCAAGATTGTTGCATTATCTTACCCAATTAATTTCACACTGACTATTAAATGCATCCATCTTTGTTTTTTTCACTATTATTATTGTTCTTTTATTCACTAGCTTCGTGATATGACTACTACTTGCTTTTTAAGCCCCACTCCACCTTTTGGCAGAAATAAAAGTAAATACTCAGAAGAGGGTTTTTTCATATTTCTCTACTTGTATTGTAGTAATTGTCACTTAATTATCAATCAATAAAAAT] [+] EMBL CD070511 [ AAAATAAATATAAAACCGTGAATTATATTCATTAAATTTGTCTATTTTCACACAAACACTTCAGAAACAAGCCAGCTATACATATATATATATCCCTCCAGTAAACTGTCGTCGAAGTGTACCAGCGAGATGCTGTATAGTTTCATCATTTTCTCTTTTTTCCTGTCTCTTCCCATTGTGTAGCATATTTTTTTCCTTGTGTATGTATGATGAACCCAACCAGCCCTGTGNNTA TT TGTGTTTGATA ] [-] EMBL CD120725 [ GTCGTCGAAGTGTACCAGCGAGATGCTGTATAGTTTCATCATTTTCTCTTTTTTCCTGTCTCTTCCCATTGTGTAGCATATTTTTTTCCTTGTGTATGTATGATG ] consensusID : consensus_11049#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 721 fasta sequence [CCTCGGGCCAAAAATTCGGCACGAGGCGCAGTATTTAAATTACTTCTAAGCAATGGCAACTGGGAGTTCGGGTGATAGCTACTATTGCCACTCTTGCGAAGCTGAGGTCGTCCCAAAC-TGCA--G-GACTTTACATGCTCAGCGTGTCACTCAGGTTTCA--TTGA-A--GCAATTAGCCCAGGAAGTGGTTTATCATCGAATCCAACAG-AATTAGATGCAATGCAGATGATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTTTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGATGAGTCATTAGAAAGGGAAAGTTTATCTAGAAGGTCGCGACGATCAACAAGGAATTCAAATCATAGGTCGACACGAGAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTATCCAGTTATCAAGTGTGGATCATCCATTCAGATTGCCATTCTTATCAAACTTCGGATCAGCTGATGGAGATATGCAAAATTTTGTTTTTAATAGAGCTATGTTTGACCAGTTTATCACTGTGTTAATGAATGAGTTACAAGTGGGTCCGCCACCCGCCCCAGAATCAGCCATTGCAGACT-TACCTACAATTAGTTTGACTGAAGAACAAGCATTAAAGTTGGNGTATTTGTTCAATATGCTTTGATGATTTCAAAGAATCCGAATCAGTTATCAGACTACCATGT] [+] EMBL CD081829 [CCTCGGGCCAAAAATTCGGCACGAGGCGCAGTATTTAAATTACTTCTAAGCAATGGCAACTGGGAGTTCGGGTGATAGCTACTATTGCCACTCTTGCGAAGCTGAGGTCGTCCCAAAC T T GACTTTACATGCTCAGCGTGTCACTCAGGTTTCA TTGA A GCAATTAGCCCAGGAAGTGGTTTATCATCGAATCCAACAG AATTAGATGCAATGCAGATGATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTTTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGATGAGTCATTAGAAAGGGAAAGTTTATCTAGAAGGTCGCGACGATCAACAAGGAATTCAAATCATAGGTCGACACGAGAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTATCCAGTTATCAAGTGTGGATCATCCATTCAGATTGCCATTCTTATCAAACTTCGGATCAGCTGATGGAGATATGCAAAATTTTGTTTTTAATAGAGCTATGTTTGACCAGTTTATCACTGTGTTAATGAATGAGTTACAAGTGGGTCCGCCACCCGCCCCAGAATCAGCCATTGCAGACT TACCTACAATTAGTTTGACTGAAGAACAAGCATTAAAGTTGGNGTATTTGTTCAATATGCTTTGATGATTTCAA ] [+] EMBL CD180943 [ AAATTACTTCTAAGCAATGGCAACTGGGAGTTCGGGTGATAGCTACTATTGCCACTCTTGCGAAGCTGAGGTCGTCCCAAACTTGCA G GACTTTACATGCTCAGCGTGTCACTCAGGTTTCA TTGA A GCAATTAGCCCAGGAAGTGGTTTATCATCGAATCCAACAG AATTAGATGCAATGCAGATGATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTTTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGATGAGTCATTAGAAAGGGAAAGTTTATCTAGAAGGTCGCGACGATCAACAAGGAATTCAAATCATAGGTCGACACGAGAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTATCCAGTTATCAAGTGTGGATCATCCATTCAGAT ] [+] EMBL CD150684 [ TCGGGTGATAGCTACTATTGCCACTCTTGCGAAGCTGAGGTCGTCCCAAACTTGCA G GACTTTACAAGCTCAGCGTGTCACTCAGGTTTCA TTGA A GCAATTAGCCCAGGAAGTGGTTTATCATCGAATCCAACAG AATTAGATGCAATGCAGATGATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTTTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGATGAGTCATTAGAAAGGGAAAGTTTATCTAGAAGGTCGCGACGATCAACAAGGAATTCAAATCATA ] [+] EMBL CD127825 [ ACTCTTGCGAAGCTGAGGTCGTCCCAAACTTGCA G GACTTTACATGCTCAGCGTGTCACTCAGGTTTCA TTGA A GCAATTAGCCCAGGAAGTGGTTTATCATCGAATCCAACAG AATTAGATGCAATGCAGATGATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTTTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGATGAGTCATTAGAAAGGGAAAGTATATCTAGAAGGTCGCGACGATCAACAAGGAATTCAAATCATAGGTCGACACGAGAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTCTTTCCACTCGTATCCAGTTATCAAGTGTGGATCATCCATTCAGGTTGCCATTCTTATCAAACTTCGGATCAGCTGATGGAGATATGCAAAATTTTGTTTTTAATAGAGCTATGTTTGACCAGTTTATCACTGTGTTAATGAATGAGTTACAAGTGGGTCCGCCACCCGCCCCAGAATCAGCCA ] [+] EMBL CD181599 [ AAACTTGCA G GACTTTACATGCTCAGCGTGTCACTCAGGTTTCA TTGA A GCAATTAGCCCAGGAAGTGGTTTATCATCGAATCCAACAG AATTAGATGCAATGCAGATGATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTTTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGATGAGTCATTAGAAAGGGAAAGTTTATCTAGAAGGTCGCGACGATCAACAAGGAATTCAAATCATAGGTCGACACGAGAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTATCCAGTTATCAAGTGTGGATCATCCATTCAGATTGCCATTTCTATC ] [-] EMBL CD181296 [ AAC TGCAG G GACTTTACATGCTCAGCGTGTCACTCAGGNTTCA TGANN GCAATTAGCCCAGGAAGTGGTTTATCATCGAATCCAACAG AATTAGATGCAATGCAGATGATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTTTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGATGAGTCATTAGAAAGGGAAAGTTTATCTAGAAGGTCGCGACGATCAACAAGGAATTCAAATCATAGGTCGACACGAGAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTATCCAGTTATCAAGTGTGGATCATCCATTCAGATTGCCATTCTTATCA ] [-] EMBL CD181342 [ AAC TGCA GNNACTTTACATGCTCAGCGTGTCACTCAGGTTTCA TTGA A GCNAATAGCCCAGGAAGTGGTTTATCATCGAATCCAACAG AATTAGATGCAATGCAGATGATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTNTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGATGAGTCATTAGAAAGGGAAAGTTTATCTAGAAGGTCGCGCCGATCAACAAGGAATTCAAATCATAGGTCGACACGAGAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTATCCAGTTATCAAGTGTGGATCATCCATTCAGATTGCCATTCTTATCA ] [-] EMBL CD181291 [ AAC TGCA GNNACTTTACATGCTCAGCGTGTCACTCAGGTTTCA TTGA A GCNAATAGCCCAGNAAGTGGTTTATCATCGAATCCAACAG AATTAGATGCAATGCAGATGATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTTTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGATGAGTCATTAGAAAGGGAAAGTTTATCTAGAAGGTCGCGACGATCAACAAGGAATTCAAATCATAGGTCGACACGAGAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTATCCAGTTATCAAGTGTGGATCATCCATTCAGATTGCCATTCTTATCA ] [-] EMBL CD181484 [ AAC TGCAN G GACTTTACATGCTCAGCGTGTCACTCAGG TTCA TGA ANNGCAATTAGCCCAGGAAGTGGTTTATCATCGAATCCAACAG AATTAGATGCAATGCAGATGATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTTTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGATGAGTCATTAGAAAGGGAAAGTTTATCTAGAAGGTCGCGACGATCAACAAGGAATTCAAATCATAGGTCGACACGAGAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTATCCAGTTATCAAGTGTGGATCATCCATTCAGATTGCCATTCTTATCA ] [-] EMBL CD181389 [ AC TGCAGGG GACTTTACATGCTCAGCGTGTCACTCAG TTCANNTNGA A GCAA TAGCCC CAGGTGGTTTATCATCGAATCCANCAG AATTAGATGCAATGCAGATGATAGGTCAGCTATTGNGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTTTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGATGAGTCATTAGAAAGGGAAAGTTTATCTAGAAGGTCGCGACGATCAACAAGGAATTCAAATCATAGGTCGACACGAGAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTATCCAGTTATCAAGTGTGGATCATCCATTCAGATTGCCATTCTTATCA ] [-] EMBL CD181428 [ act TGCA GACTTTACATGCTCAGCGTGTCACTCAGGTTTCA TGNA A GC ATTAGCCCAGGAAGTGGTTTATCATCGAATCC ACAGAAATTAGATGCAATGCTGATGATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTTTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGATGAGTCATTAGAAAGGGAAAGTTTATCTAGAAGGTCGCGACGATCAACAAGGAATTCAAATCATAGGTCGACACGAGAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTATCCAGTTATCAAGTGTGGATCATCCATTCAGATTGCCATTCTTATCA ] [+] EMBL CD158956 [ TATCCCATGAAGTGGTTTATCATCGAATCCAACGG AATTAGATGCAGTGCATATGATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTTTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGATGAGCCATTATAAAGGGAAAGTTTATCTATAAGGTCGCGACGATCAACAAGGAATTCACATCATATGTCGACACGATAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTATCCAGTTATCAAGTGTGGATCATCCATTCAGATTGCCATTCTTATCAAACTTCGGATCAGCTGATGGAGATATGCAAAATTTTGTTTTTAATAGAGCTATGTTTGACCAGTTTATCACTGTGTTAATGAATGAGTTACAAGTGGGTCCGCCACCCGCCCCAGAATCAGCCATTGCAGACT TACCTACAATTAGTTTGACTGAAGAACAAGCATTACAGTTGG GTATTTGATCAATATGCTTTGATGATTTCAAAGAATCCGAATCAGTTATCAGACTACCATGT] [+] EMBL CD137683 [ TAGCCCAGGAAGTGGTTTATCATCGAATCCAACAG AATTAGATGCAATGCAGATGATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTTTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGGTGAGTCATTAGAAAGGGAAAGTTTATCTAGAAGGTCGCGACGATCAACAAGGAATTCAAATCATAGGTCGACGCGAGAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTATCCAGTTATCAAGTGTGGATCATCCATTCAGATTGCCATTCTTATCAAACTTCGGATCAGCTGATGGAGATATGCAAAATTTTGTTTTTAATAGAGCTATGTTTGACCAGTTTATCACTGTGTTAATGAATGAGTTACAAGTGGGTCCGCCACCCGCCCCAGAATCAGCCATTGCAGACTNTACCTAC ATTAGTTT ] [+] EMBL CD066527 [ TTATCATCGAATCCAACAG AATTAGATGCAATGCACATGATAGGTCAGCTATTTGGAGGTTCGCTTAACGATAATTTTGTTCGCTATTTTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGATGAGTCATTATAAAGGGAAAGTTTATCTAGAAGGTCGCGACGATCAACAAGGAATTCAAATCATAGGTCGACACGAGAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTATCCAGTTATCAAGTGTGGATCATCCATTCAGATTGCCATTCTTATCAAACTTCGGATCAGCTGATGGAGATATGCAAAATTTTGTTTTTAATAGAGCTA ] consensusID : consensus_11049#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 509 fasta sequence [TCATTAAACTTGGTCTATGTTTCACACAAACACTTCAGAAACGAGCCAGCTATACATATATATATATCCGTCCAGGTAAACTGTCGTCGAAGTTGTACCAGCGGAGATGCTTGTATAGTTTCATCATTTTCTCCTTTTTCCTGGTCTCTTCCCATTGTGTAGCATATTTTTTTTCCTGTGTATGTATGATGAACCCAACCAGCGCTGTGTTATTTTGTGTTTGATAATTTTCTCCCTGTTTCTTGCAAAATCCAACTTTTCTATTAAGATTTATTTTTACCAAGATTGTTGCATTATCTTACGCAATTAATTTCACACGGACTATTAAATGCATCCATCTGTGTTTTTTTCAACAATAATAATGGTGCTTTTATCACGAGCTTCGTGATATGACTACTACTTTGCTTTCTAAGCCCACTCCACCTTTTGGCAGAAATAAAGTAATACTCAGAGAGGGTTTTTCATATTCTCTACTGGAATGTAGTATTGGCACTTATTATCATCATAAA] [+] EMBL AI739697 [TCATTAAACTTGGTCTATGTTTCACACAAACACTTCAGAAACGAGCCAGCTATACATATATATATATCCGTCCAGGTAAACTGTCGTCGAAGTTGTACCAGCGGAGATGCTTGTATAGTTTCATCATTTTCTCCTTTTTCCTGGTCTCTTCCCATTGTGTAGCATATTTTTTTTCCTGTGTATGTATGATGAACCCAACCAGCGCTGTGTTATTTTGTGTTTGATAATTTTCTCCCTGTTTCTTGCAAAATCCAACTTTTCTATTAAGATTTATTTTTACCAAGATTGTTGCATTATCTTACGCAATTAATTTCACACGGACTATTAAATGCATCCATCTGTGTTTTTTTCAACAATAATAATGGTGCTTTTATCACGAGCTTCGTGATATGACTACTACTTTGCTTTCTAAGCCCACTCCACCTTTTGGCAGAAATAAAGTAATACTCAGAGAGGGTTTTTCATATTCTCTACTGGAATGTAGTATTGGCACTTATTATCATCATAAA] consensusID : consensus_11049#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 438 fasta sequence [TCGGGTGTTACCTACTATTGCCACTCTTGCGAAGCTGAGGTCGTCCCAAACTTGCAGGTTATTTTAAAATAACGTTCGCTAATTATTGTTCAGGACTTTACATGCTCAGCGTGTCACTCAGGTTTCATTGAAGCAATTAGCCCAGGAAGTGGTTTATCATCGAATCCAACAGAATTAGATGCAATGCAGATGATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTTTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGATGAGTCATTAGAAAGGGAAAGTTTATCTAGAAGGTCGCGACGATCAACAAGGAATTCAAATCATAGGTCGACACGAGAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTATCCAGTTATCAAGTGTGGATCATCCATTCAGA] [+] EMBL CD144504 [TCGGGTGTTACCTACTATTGCCACTCTTGCGAAGCTGAGGTCGTCCCAAACTTGCAGGTTATTTTAAAATAACGTTCGCTAATTATTGTTCAGGACTTTACATGCTCAGCGTGTCACTCAGGTTTCATTGAAGCAATTAGCCCAGGAAGTGGTTTATCATCGAATCCAACAGAATTAGATGCAATGCAGATGATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTTTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGATGAGTCATTAGAAAGGGAAAGTTTATCTAGAAGGTCGCGACGATCAACAAGGAATTCAAATCATAGGTCGACACGAGAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTATCCAGTTATCAAGTGTGGATCATCCATTCAGA] consensusID : consensus_11049#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 359 fasta sequence [ACGTTAACCAAGGCGTTTGCTTGGTGGTGTCTGACTTTGAATCATCATTTGCGTCTCGAGAGACTGCTATGTAAGCGCAGGTAATGTTAAGTGTTGGGTACTAGGTACTTATACCAAAATAATCGATGTAGTTGTGAATATTCATCGGCTGAAGTGACTGGGACAAAACAGAACGTTATTAAACATCCCACGGTTATCTAATTTAAGAGCTTGAAGTGACGAAATTACTATATAACTAATAAGAACATGTCTCCGTATGCATAACTGGCCGTTTTCTTTTTTAGCTATGTTTGACCAGTTTATCACTGTGTTAATGAATGAGTTACAAGTGGGTCCGCCACCCGCCCCAGAATCAGCCA] [+] EMBL CD127156 [ACGTTAACCAAGGCGTTTGCTTGGTGGTGTCTGACTTTGAATCATCATTTGCGTCTCGAGAGACTGCTATGTAAGCGCAGGTAATGTTAAGTGTTGGGTACTAGGTACTTATACCAAAATAATCGATGTAGTTGTGAATATTCATCGGCTGAAGTGACTGGGACAAAACAGAACGTTATTAAACATCCCACGGTTATCTAATTTAAGAGCTTGAAGTGACGAAATTACTATATAACTAATAAGAACATGTCTCCGTATGCATAACTGGCCGTTTTCTTTTTTAGCTATGTTTGACCAGTTTATCACTGTGTTAATGAATGAGTTACAAGTGGGTCCGCCACCCGCCCCAGAATCAGCCA] consensusID : consensus_11049#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 132 fasta sequence [AGGATCCAGCTCCAAACTTAACAGGAAATAGTAATGGTTCAAGCTCTTCCACTTCTTAGTCCTTCAATATTCTTTCCAATTTTTCTTAAATAGAATATAAAACCGTGGAATTATATCCATTTAAAATTGTAC] [+] EMBL AW061404 [AGGATCCAGCTCCAAACTTAACAGGAAATAGTAATGGTTCAAGCTCTTCCACTTCTTAGTCCTTCAATATTCTTTCCAATTTTTCTTAAATAGAATATAAAACCGTGGAATTATATCCATTTAAAATTGTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11049#1 ------------------------------------------------------------ consensus_11049#3 ------------------------------------------------------------ consensus_11049#0 AAACTTGCAGGACTTTACATGCTCAGCGTGTCACTCAGGTTTCATTGAAGCAATTAGCCC 60 consensus_11049#2 ------------------------------------------------------------ consensus_11049#5 ------------------------------------------------------------ consensus_11049#4 ------------------------------------------------------------ consensus_11049#1 ------------------------------------------------------------ consensus_11049#3 ------------------------------------------------------------ consensus_11049#0 AGGAAGTGGTTTATCATCGAATCCAACAGAAGTATATATCTGTCATTCTAACCTTTATTT 120 consensus_11049#2 ------------------------------------------------------------ consensus_11049#5 ------------------------------------------------------------ consensus_11049#4 ------------------------------------------------------------ consensus_11049#1 ------------------------------------------------------------ consensus_11049#3 ------------------------------------------------------------ consensus_11049#0 ATAACAGTTAGATGCAATGCAGATGATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAA 180 consensus_11049#2 ------------------------------------------------------------ consensus_11049#5 ------------------------------------------------------------ consensus_11049#4 ------------------------------------------------------------ consensus_11049#1 ------------------------------------------------------------ consensus_11049#3 ------------------------------------------------------------ consensus_11049#0 TTTTGTTCGCTATTTTGCAGCACCTAGAGATGATCTTAGTTCAACAGATGATGAGTCATT 240 consensus_11049#2 ------------------------------------------------------------ consensus_11049#5 ------------------------------------------------------------ consensus_11049#4 ------------------------------------------------------------ consensus_11049#1 ------------------------------------------------------------ consensus_11049#3 ------------------------------------------------------------ consensus_11049#0 AGAAAGGGAAAGTTTATCTAGAAGGTCGCGACGATCAACAAGGAATTCAAATCATAGGTC 300 consensus_11049#2 ------------------------------------------------------------ consensus_11049#5 ------------------------------------------------------------ consensus_11049#4 ------------------------------------------------------------ consensus_11049#1 ------------------------------------------------------------ consensus_11049#3 ------------------------------------------------------------ consensus_11049#0 GACACGAGAACGTGTGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTAT 360 consensus_11049#2 ------------------------------------------------------------ consensus_11049#5 ------------------------------------------------------------ consensus_11049#4 ------------------------------------------------------------ consensus_11049#1 ------------------------------------------------------------ consensus_11049#3 ------------------------------------------------------------ consensus_11049#0 CCAGTTATCAAGTGTGGATCATCCATTCAGATTGCCATTCTTATCAAACTTCGGATCAGC 420 consensus_11049#2 ------------------------------------------------------------ consensus_11049#5 ------------------------------------------------------------ consensus_11049#4 ------------------------------------------------------------ consensus_11049#1 ------------------------------------------------------------ consensus_11049#3 ------------------------------------------------------------ consensus_11049#0 TGATGGAGATATGCAAAATTTTGTTTTTAATAGAGCTATGTTTGACCAGTTTATCACTGT 480 consensus_11049#2 ------------------------------------------------------------ consensus_11049#5 ------------------------------------------------------------ consensus_11049#4 ------------------------------------------------------------ consensus_11049#1 ------------------------------------------------------------ consensus_11049#3 ------------------------------------------------------------ consensus_11049#0 GTTAATGAATGAGTTACAAGTGGGTCCGCCACCCGCCCCAGAATCAGCCATTGCAGACTT 540 consensus_11049#2 ------------------------------------------------------------ consensus_11049#5 ------------------------------------------------------------ consensus_11049#4 ------------------------------------------------------------ consensus_11049#1 ------------------------------------------------------------ consensus_11049#3 ------------------------------------------------------------ consensus_11049#0 ACCTACAATTAGTTTGACTGAAGAACAAGCATTAAAGTTGGGTATTTGTTCAATATGCTT 600 consensus_11049#2 ------------------------------------------------------------ consensus_11049#5 ------------------------------------------------------------ consensus_11049#4 ------------------------------------------------------------ consensus_11049#1 ------------------------------------------------------------ consensus_11049#3 ------------------------------------------------------------ consensus_11049#0 TGATGATTTCAAAGAATCCGAATCAGTTATCAGACTACCATGTGCTCACACCTACCATCA 660 consensus_11049#2 ------------------------------------------------------------ consensus_11049#5 ------------------------------------------------------------ consensus_11049#4 ------------------------------------------------------------ consensus_11049#1 ------------------------------------------------------------ consensus_11049#3 ------------------------------------------------------------ consensus_11049#0 AACTTGTGTTACAACATGGTTAAAACAGCACGGAACTTGTCCAGTTTGTCGAAAGGATTT 720 consensus_11049#2 ------------------------------------------------------------ consensus_11049#5 ------------------------------------------------------------ consensus_11049#4 ------------------------------------------------------------ consensus_11049#1 ------------------------------------------------------------ consensus_11049#3 ------------------------------------------------------------ consensus_11049#0 ATCCGGACATGATACTTCACGATATGAGGATCCAGCTCAAACTTAACAGGAAATAGTAAT 780 consensus_11049#2 ------------------------------------------------------------ consensus_11049#5 ------------------------------------------------------------ consensus_11049#4 ------------------------------------------------------------ consensus_11049#1 -------------------CCTCGGGCCAAAAATTCGGCACGAGGCGCAGTATTTAAATT 41 consensus_11049#3 ----------------------------------TCGG-GTGTTACCTACTATTGCCACT 25 consensus_11049#0 GGTTCAAGCTCTTCCACTTCTTAGTCTTCATTATTCTTTCAATTTTTCTAAAATAAATAT 840 consensus_11049#2 ------------------------------------------------------------ consensus_11049#5 ------------------------------------------------------------ consensus_11049#4 ------------------------------------------------------------ consensus_11049#1 ACTTCTAAGCAATGGCAACTGGGAGTTCGGGTGATAGCTACTATTGCCACTCTTGCGAAG 101 consensus_11049#3 CTTGCGAAGCTGAGGTCGTCCCAAACTTGCAGGTTATTT--TAAAATAACGTTCGCTAAT 83 consensus_11049#0 AAAACCGTGAATTATATTCATTAAATTTG-TCTAT-TTTCACACAAACACTTCAGAAACA 898 consensus_11049#2 -----------------TCATTAAACTTGGTCTATGTTTCACACAAACACTTCAGAAACG 43 consensus_11049#5 ------------------------------------------------------------ consensus_11049#4 ------------------------------------------ACGTTAACCAAGGCGTTT 18 consensus_11049#1 CTGAGGTCGTCCCAAACTGCAGGACTTTACATGCTCAGCGTGTCACTCAGGTTTCATTGA 161 consensus_11049#3 T----ATTGTTC--------AGGACTTTACATGCTCAGCGTGTCACTCAGGTTTCATTGA 131 consensus_11049#0 AGCCAGCTATACATATATATATATCCCTCCAG---TAAACTGTCGTCGAAGT-GTACCAG 954 consensus_11049#2 AGCCAGCTATACATATATATATATCCGTCCAGG--TAAACTGTCGTCGAAGTTGTACCAG 101 consensus_11049#5 ------------------------------------------------------------ consensus_11049#4 GCTTGGTGGTGTCTGACTTTGAATCATCATTTGCGTCTCGAGAGACT---GCTATGTAAG 75 consensus_11049#1 AGCAATTAGCCCAGGAAGTGGTTTATCATCGAATCCAACAGAATTAGATGCAATGCAGAT 221 consensus_11049#3 AGCAATTAGCCCAGGAAGTGGTTTATCATCGAATCCAACAGAATTAGATGCAATGCAGAT 191 consensus_11049#0 CG-AGATGCT-GTATAGTTTCATCATTTTCTCTTTTTTCCTG-TCTCTTCCCATTGTGTA 1011 consensus_11049#2 CGGAGATGCTTGTATAGTTTCATCATTTTCTCCTTTTTCCTGGTCTCTTCCCATTGTGTA 161 consensus_11049#5 ------------------------------------------------------------ consensus_11049#4 CGCAGGTAATGTTAAGTGTTGGGTACTAGGTACTTATACCAAAATAATCGATGTAGTTGT 135 consensus_11049#1 GATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTTTGCAGCACC 281 consensus_11049#3 GATAGGTCAGCTATTTGGAGGTTCGCTTAGCGATAATTTTGTTCGCTATTTTGCAGCACC 251 consensus_11049#0 GCATATTTTTTTCCTTGTGTATGTATGATGAACCCAACCAGCCCTGTGTTATTT-GTGTT 1070 consensus_11049#2 GCATATTTTTTTTCCTGTGTATGTATGATGAACCCAACCAGCGCTGTGTTATTTTGTGTT 221 consensus_11049#5 ------------------------------------------------------------ consensus_11049#4 GAATATTCATCGGCTGAAGTG-----ACTGGGACAAAACAGAACGTTATTAAACATCCCA 190 consensus_11049#1 TAGAGATGATCTT--AGTTCAACAGATGAT-GAGTCATT---AGA--AAGGGAAAGTTTA 333 consensus_11049#3 TAGAGATGATCTT--AGTTCAACAGATGAT-GAGTCATT---AGA--AAGGGAAAGTTTA 303 consensus_11049#0 TGATAATTTTTTCCCTGTTTTTTTCCAAATCCAACTTTTCTATTA--AGATTTATTTTTA 1128 consensus_11049#2 TGATAATTTTCTCCCTGTTTCTTGCAAAATCCAACTTTTCTATTA--AGATTTATTTTTA 279 consensus_11049#5 -AGGATCCAGCTCCAAACTTAACAGGAAATAGTAATGGT---TCA--AGCTCTTCCACTT 54 consensus_11049#4 CGGTTATCTAATTTAAGAGCTTGAAGTGACGAAATTACTATATAACTAATAAGAACATGT 250 * * * * * consensus_11049#1 TCTAGAAGGTCGCGACGATCAACAAGGAATTC--AAATCATAGGTCGACACGAGAACGTG 391 consensus_11049#3 TCTAGAAGGTCGCGACGATCAACAAGGAATTC--AAATCATAGGTCGACACGAGAACGTG 361 consensus_11049#0 CCAACATTGTTGCATTATCTTACCCAATTAAT--TTCACACTGACTATTAAATGCATCCA 1186 consensus_11049#2 CCAAGATTGTTGCATTATCTTACGCAATTAAT--TTCACACGGACTATTAAATGCATCCA 337 consensus_11049#5 CTTAG--TCCTTCAATATTCTTTCCAATTTTT--CTTAAATAGAATATAAAAC-CGTGGA 109 consensus_11049#4 CTCCGTATGCATAACTGGCCGTTTTCTTTTTTAGCTATGTTTGACCAGTTTATCACTGTG 310 * consensus_11049#1 TGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTATCCAGTTATCAAGTG 451 consensus_11049#3 TGTATACTCGTGTTCCTGATGGTCGTCATGCTTTTTCCACTCGTATCCAGTTATCAAGTG 421 consensus_11049#0 TCTTTGTTTTTTTCACTATTATTATTGTTCTTTTATTCACTAGCTTCGTGATATGACTAC 1246 consensus_11049#2 TCTGTGTTTTTTTCAACAATAATAATGGTGCTTTTATCACGAGCTTCGTGATATGACTAC 397 consensus_11049#5 ATTATATCCATTTAA--AATTGTAC----------------------------------- 132 consensus_11049#4 TTAATGAATGAGTTACAAGTGGGTCCGCCACCCGCCCCAGAATCAGCCA----------- 359 * * * consensus_11049#1 TGGATCATCCATTCAGATT-GCCATTCTTATCAAACTTCGGATCAGCTGATGGAGATATG 510 consensus_11049#3 TGGATCATCCATTCAGA------------------------------------------- 438 consensus_11049#0 TACTT-GCTTTTTAAGCCCCACTCCACCTTTTGGCAGAAATAAAAGTAAATACTCAGAAG 1305 consensus_11049#2 TACTTTGCTTTCTAAGCCC-ACTCCACCTTTTGGCAGAAATAAAG--TAATACTCAGAGA 454 consensus_11049#5 ------------------------------------------------------------ consensus_11049#4 ------------------------------------------------------------ consensus_11049#1 CAAAATTTTGTTTTTAATAGAGCTATGTTTGACCAGTTTATCACTGTGTTAATGAATGAG 570 consensus_11049#3 ------------------------------------------------------------ consensus_11049#0 AGGGTTTTTTCATATTTCTCTACTTGTATTGTAGTAATTGTCACTTAATTATCAATCAAT 1365 consensus_11049#2 GGG--TTTTTCATATT-CTCTACTGGAAT-GTAGTA-TTGGCACTTA-TTATCATC--AT 506 consensus_11049#5 ------------------------------------------------------------ consensus_11049#4 ------------------------------------------------------------ consensus_11049#1 TTACAAGTGGGTCCGCCACCCGCCCCAGAATCAGCCATTGCAGACTTACCTACAATTAGT 630 consensus_11049#3 ------------------------------------------------------------ consensus_11049#0 AAAAAT------------------------------------------------------ 1371 consensus_11049#2 AAA--------------------------------------------------------- 509 consensus_11049#5 ------------------------------------------------------------ consensus_11049#4 ------------------------------------------------------------ consensus_11049#1 TTGACTGAAGAACAAGCATTAAAGTTGGNGTATTTGTTCAATATGCTTTGATGATTTCAA 690 consensus_11049#3 ------------------------------------------------------------ consensus_11049#0 ------------------------------------------------------------ consensus_11049#2 ------------------------------------------------------------ consensus_11049#5 ------------------------------------------------------------ consensus_11049#4 ------------------------------------------------------------ consensus_11049#1 AGAATCCGAATCAGTTATCAGACTACCATGT 721 consensus_11049#3 ------------------------------- consensus_11049#0 ------------------------------- consensus_11049#2 ------------------------------- consensus_11049#5 ------------------------------- consensus_11049#4 ------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||