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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11060#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 21 consensus length = 804 fasta sequence
[GGGTACAGCTGATTCAAGGTCACGGAAATTTCCTATTAGAACCCTTCTTTGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGA-AGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAATGCTAACAAATCAAAAAACAAACATTTGTCAGGGAGTATTCCTGGAAATACACCAATTCCTATAACATCAAAAACCGAAATATTAAAATCTCATCCACGTAATGGATTACGACCTGGTCATATACATCAGTCCTCCGCTAGAAATTCCAATGGAACACGTCAAATGTTGGCACGTTGGAATGCTTGTCGTAAACAAAATAATCATACAAACCTATGCGTTGATTCTCAACGTTCCAAATGTTTACGCCGTGGTCCACTAATTAATCATGGTTTTCAGCGTCGTCAAGTTCGTATGGGCAACGGTGGTCATATACCTCATCAAAGAAGTTAATAGAAAATCAAGAAATTAATTGATTTTTGTGATATTTTGCTTCTACAACATTGTAATAACGGATATTTGGTGTTCAGTTTGTTTGTCACATTGATATTAGTGGCAATA]
[+] EMBL AI067263 [GGGTACAGCTGATTCAAGGTCACGGAAATTTCCTATTAGAACCCTTCTTTGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTGAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGACGTGATCAACGA CGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAATGCTAACACATCAAAAGACACACATTTGTCAGGGAGTATTCCTGGAAATACACCAATTCCTATAACATCAAAAACCGAAATATTAAAATCTCATCCACGTAATGGATTACGACCTGGTCATATACATCAGTCCTCCGCTAGAAATTCCAATGGAACACGTCAAATGTTGGCACCTTGGAATGCTTGTCGTAGACAAAATAATCATACAAACCTATGCGTTGATTCTCAACGT ]
[+] EMBL AI067395 [GGGTACAGCTGATTCAAGGTCACGGAAATTTCCTATTAGAACCCTTCTTTGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGA AGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAATGCTAACAAATCAAAAAACAAACATTTGTCAGGGAGTATTCCT ]
[+] EMBL AI068055 [GGGTACAGCTGATTCAAGGTCACGGAAATTTCCTATTAGAACCCTTCTTTGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGA AGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAATGCTAACAAATCAAAAAACAAACATTTGTCAGGGAGTATTCCT ]
[+] EMBL AI067224 [GGGTACAGCTGATTCAAGGTCACGGAAATTTCCTATTAGAACCCTTCTTTGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGA AGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAATGCTAACAAATCAAAAAACAAACATTTGTCAGGGAGTATTCCTGGAAATACACCAATTCCTATAACATCAAAAACCGAAATATTAAAATCTCATCCACGTAATGGATTACGACCTGGTCATATACATCAGTCCTCCGCTAGAAATTCCAATGGAACACGTCAAATGTT ]
[+] EMBL AI066989 [GGGTACAGCTGATTCAAGGTCACGGAAATTTCCTATTAGAACCCTTCTTTGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGA AGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAATGCTAACAAAT ]
[+] EMBL AI067311 [GGGTACAGCTGATTCAAGGTCACGGAAATTTCCTATTAGAACCCTTCTTTGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGA AGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGAT ]
[+] EMBL AI067484 [GGGTACAGCTGATTCAAGGTCACGGAAATTTCCTATTAGAACCCTTCTTTGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGA AGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCG ]
[+] EMBL AI067076 [GGGTACAGCTGATTCAAGGTCACGGAAATTTCCTATTAGAACCCTTCTTTGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGA AGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCA ]
[+] EMBL AI068149 [GGGTACAGCTGATTCAAGGTCACGGAAATTTCCTATTAGAACCCTTCTTTGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGA AGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGANAAATGCTAACAAATCAAAAGACAAACATTTGTCAGGGAGTATTCCTGGANATACACCAATTCCT ]
[+] EMBL AI067375 [GGGTACAGCTGATTCAAGGTCACGGAAATTTCCTATTAGAACCCTTCTTTGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGA AGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAATGCTAACAAATCAAAAAACAAACATTTGTCAGGGAGTATTCCT ]
[+] EMBL AI068005 [ GGTACAGCTGATTCAAGGTCACGGAAATTTCCTATTAGAACCCTTCTTTGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGA AGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAATGCTAACAAATCAAAAAACAAACATTTGTCAGGGAGTATTCCTGGAAATACACCAATTCCTATAACATCAAAAACCGAAATATTAAAATCTCATCCACGTAATGGATTACGACCTGGTCATATACATCAGTCCTCCGCTAGAAATTCCAATGGAACACGTCAAATGTTGGCACGTTGGAATGCTTGTCGTAAACAAAATAATCATACAAACC ]
[+] EMBL AI067223 [ GGTACAGCTGATTCAAGGTCACGGAAATTTCCTATTAGAACCCTTCTTTGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGA AGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAATGCTAACAAATCAAAAAACAAACATTTGTCAGGGAGTATTCCTGGAAATACACCAATTCCTATAACATCAAAAACCGAAATATTAAAATCTCATCCACGTAATGGATTACGACCTGGTCATATACATCAGTCCTCCGCTAGAAATTCCAATGGAACACGTCAAATGTTGGCACGTTGGAATGCCTGTCGTAAAC ]
[+] EMBL AI068011 [ GGTACAGCTGATTCAAGGTCACGGAAATTTCCTATTAGAACCCTTCTTTGTAAAATATATTCATCCTATTTTGAAGAAACATTTATTTATCACTTTTAATCATGATGAAAGCCTGTTAATTGGTCGATATTAATGGTGAAGTGATCAACGATTGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAATGCTAACAAATCANAAAACAAACATTTGTCAGGGAGTATTCCTGGAAATACACCAATTCCTATAACATCATAAACCGAAATATTAAAATCTCATCCACGTAATGGATTACGACCTGGTCATATACATCAGT ]
[+] EMBL AI067764 [ GGTACAGCTGATTCAAGGTCACGGAAATTTCCTATTAGAACCCTTCTTTGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGA AGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAATGCTAACAAATCAAAAAACAAACATTTGTCAGGGAGTATTCCTGGAAATACACCAATTCCTATAACATCAAAAACCGAAATATTAAAATCTCATCCACGTAATGG ]
[+] EMBL AI068334 [ GGTACAGCTGATTCAAGGTCACGGAAATTTCCTATTAGAACCCTTCTTTGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGA AGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAGAAATGCTAACAAATCATAAAACAAACATTTGTCACGGAGTATTCCTGGAAATACA CAATTCCTATAACATCAAAAACCGAGATATTAAAATCTCA ]
[+] EMBL AI068083 [ GGTACAGCTGATTCAAGGTCACGGAAATTTCCTATTAGAACCCTTCTTTGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGA AGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAATGCTAACAAATCAAAAAACAAACATTTGTCA ]
[+] EMBL AI067754 [ GGTACAGCTGATTCAAGGTCACGGAAATTTCCTATTAGAACCCTTCTTTGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGA AGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAATGCTAACAAATCAAAAAACAAACATTTGTCAGGGAGTATTCCT ]
[+] EMBL AI068078 [ GGTACAGCTGATTCAAGGTCACGGAAATTTCCTATTAGAACCCTTCTTTGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGA AGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCC ]
[+] EMBL AI067343 [ GGTACAGCTGATTCAAGGTCACGGAAATTTCCTATTAGAACCCTTCTTTGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGA AGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAATGC ]
[-] EMBL CD197736 [ AAAATGCTAACAAATCAAAAAACAAACATTTGTCAGGGAGTATTCCTGGAAATACACCAATTCCTATAACATCAAAAACCGAAATATTAAAATCTCATCCACGTAATGGATTACGACCTGGCCATATACATCAGTCCTCCGCTAGAAATTCCAATGGAACACGTCAAATGTTGGCACGTTGGAATGCTTGTCGTAAACAAAATAATCATACAAACCTATGCGTTGATTCTCAACGTTCCAAATGTTTACGCCGTGGTCCACTAATTAATCATGGTTTTCAGCGTCGTCAAGTTCGTATGGGCAACGGTGGTCATATACCTCATCAAAGAAGTTAATAGAAAATCAAGAAATTAATTGATTTTTGTGATATTTTGCTTCTACAACATTGTAATAACGGATATTTGGTGTTCAGTTTGTTTGTCACATTGATATTAGTGGCAATA]
[-] EMBL BG931850 [ TCATATACATCAGTCCTCCGCTAGAAATTCCAATGGAACACGTCAAATGTTGGCACGTTGGAATGCTTGTCGTAAACAAAATAATCATACAAACCTATGCGTTGATTCTCAACGTTCCAAATGTTTACGCCGTGGTCCACTAATTAATCATGGTTTTCAGCGTCGTCAAGTTCGTATGaa ]
consensusID : consensus_11060#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 729 fasta sequence
[TCCAGGCCAANAATTTGGCACGAGGTTCTCAACT--CATGTTACACAGAAGCTGAGACGCAAGGTTCCTCCTGCTTTTATTGGTTTC-TTTCTGTTTCTAGTTTCGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGAAGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAATGCTAACAAATCAAAAAACAAACATTTGTCAGGGAGTATTCCTGGAAATACACCAATTCCTATAACATCAAAAACCGAAATATTAAAATCTCATCCACGTAATGGATTACGACCTGGTCATATACATCAGTCCTCCGCTAGAAATTCCAATGGAACACGTCAAATGTTGGCACGTTGGAATGCTTGTCGTAAACAAAATAATCATACAAACCTATGCGTTGATTCTCAACGTTCCAAATGTTTACCGCCGTGGTCCACTAATTAATCATGGTTNTCAGCGTCGTCAAGTTCGTATGGGCAACGGTGGTATAT]
[+] EMBL CD080843 [TCCAGGCCAANAATTTGGCACGAGGTTCTCAACT CATGTTACACAGAAGCTGAGACGCAAGGTTCCTCCTGCTTTTATTGGTTTC TTTCTGTTTCTAGTTTCGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGAAGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAATGCTAACAAATCAAAAAACAAACATTTGTCAGGGAGTATTCCTGGAAATACACCAATTCCTATAACATCAAAAACCGAAATATTAAAATCTCATCCACGTAATGGATTACGACCTGGTCATATACATCAGTCCTCCGCTAGAAATTCCAATGGAACACGTCAAATGTTGGCACGTTGGAATGCTTGTCGTAAACAAAATAATCATACAAACCTATGCGTTGATTCTCAACGTTCCAAATGTTTACCGCCGTGGTCCACTAATTAATCATGGTTNTCAGCGTCGTCAAGTTCGTATGGGCAACGGTGGTATAT]
[-] EMBL CD141386 [ aGTT TC ACTNNCATGTANCACAGAAGCTGAGACGCAAGGTTCCTCCTGCTTTTA TGGTTTCTTTTCTGTTTCTAGTTTCGTAAAATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGAAGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGA ]
[+] EMBL CD138229 [ AATATATTCATCCTATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGAAGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAATGCTAACAAATCAAAAAACAAGCATTTGTCAGGGAGTATCCCTGGAAATACACCAATTCCTATTACATCAAAAACCGAc ]
[+] EMBL CD138860 [ ATTATTCATCACTTTTAATCATGATGAAAGCCTGGCAATTGGCCGATATTAATGGTGAAGTGATCAACGATGAAGAT TTTCAA TGTGGGTCCTGATTGGTCATTCATGCAATTCGATCGGCATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTACTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAATGCTAACAAATCAAAAAACAAACATTTGTCAGGGAGTATTCCTGGAAATACACCAATTCCTATAACATCAAAAACCGAAATATTAAAATCTCATCCACGTAATGGATTACGACCTGGTCATA ]
[+] EMBL AI068362 [ GAAAGCCTGGCAATTGGTCGATATTAATGGTGAAGTGATCAACGAAGAAGATATTTCAAGTGTGGGTTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAATGCTAACAAATCAAAAAACAAACATTTGTCACGGAGTATTCCTGGAAATACACCAATTCCTATAACATCAAAAACCGAAATATTAAAATCTCATC ]
[-] EMBL CD121925 [ GATATTTCAAGTGTGGTNTCTGATTGGTCATTCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAATGCTAACAAATCAAAAAACAAACATTTGTCAGGGAGTATTCCTGGAAATACACCAATTCCTATAACATCAAAAACCGAAATATTAAAATCTCATCCACGTAATGGATTACGACCTGGT ]
[-] EMBL CD138091 [ TATCCAAGTCGCCCACATTCGATAGGTGGTGGACGATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTCTGCGAACAGTGATTATAACTGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAATGCTAACAAATCAAAAAACAAACATTTGTCAGGGAGTATTCCTGGAAATACACCAATTCCTATAACATCAAAAACCGAAATATTAAAATCTCATCCACGTAATGGATTACGACCTGGTCATATACATCAGTCCTCCGCTAGAAATTCCAATGGAACACGTCAAATGTTGGCACGTTGGAATGCTTGTCGTAAACAAAATAATCATACAAACCT ]
consensusID : consensus_11060#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 380 fasta sequence
[GAGGTTGATCCTCAACGTCCCAANTGTNTACGCCGNGGTCCACTAAATNAATCATGGTTTTCAGCGTCGTCAAGTTCGTTTGGGCAACGGTGGTCATNTACCTCATCAAAGAAGTTAATAGAAAATCACGANATTACTTGATTTCGGTGATATTTGGCTTCTACAACATTGTCATAACGGATNTTNGGTGTTCAGNTNGTNNGGTCACATTGNATATTAGTGGCAAATAAGAATTTACATGTGATNCTNNNNCATTACTTAGNGTCTNAGTGTNATCCAATNAGCAAANATTCCCCACAAAAATTTNNNACTCAACCCAACAGNTTCTTTCTCTTNTTAAATTTTAGGTAATNTTTACNCAACCCCNTGGGGTGTNCNTT]
[+] EMBL SM4031 [GAGGTTGATCCTCAACGTCCCAANTGTNTACGCCGNGGTCCACTAAATNAATCATGGTTTTCAGCGTCGTCAAGTTCGTTTGGGCAACGGTGGTCATNTACCTCATCAAAGAAGTTAATAGAAAATCACGANATTACTTGATTTCGGTGATATTTGGCTTCTACAACATTGTCATAACGGATNTTNGGTGTTCAGNTNGTNNGGTCACATTGNATATTAGTGGCAAATAAGAATTTACATGTGATNCTNNNNCATTACTTAGNGTCTNAGTGTNATCCAATNAGCAAANATTCCCCACAAAAATTTNNNACTCAACCCAACAGNTTCTTTCTCTTNTTAAATTTTAGGTAATNTTTACNCAACCCCNTGGGGTGTNCNTT]
consensusID : consensus_11060#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 268 fasta sequence
[TTTCGGGCGCAATATGCAATCAAGAAATTAATTGATTTTTGTGATATTTTGCTCTACAACATTGTAATAACGGATATTTGGTGTTCAGTTTGTTTGTCACATTGATATTAGTTGCCATTAGGACTTACCATGGATTCCTTTAAATTACCTAAGGGCCTAAGTGTATACCTTAGGAAAAATTACCCCCAAATTTGCCCTCACTCCAACAGCTATATTCCATAAAATTTTATTTATAACACCCTTCTCTGGGTGCTCCAATCCGGGTTTT]
[+] EMBL AW146492 [TTTCGGGCGCAATATGCAATCAAGAAATTAATTGATTTTTGTGATATTTTGCTCTACAACATTGTAATAACGGATATTTGGTGTTCAGTTTGTTTGTCACATTGATATTAGTTGCCATTAGGACTTACCATGGATTCCTTTAAATTACCTAAGGGCCTAAGTGTATACCTTAGGAAAAATTACCCCCAAATTTGCCCTCACTCCAACAGCTATATTCCATAAAATTTTATTTATAACACCCTTCTCTGGGTGCTCCAATCCGGGTTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11060#2 ------------------------------------------------------------
consensus_11060#3 ------------------------------------------------------------
consensus_11060#0 ----------------------------------------------------GGGTACA- 7
consensus_11060#1 TCCAGGCCAANAATTTGGCACGAGGTTCTCAACTCATGTTACACAGAAGCTGAGACGCAA 60
consensus_11060#2 ------------------------------------------------------------
consensus_11060#3 ------------------------------------------------------------
consensus_11060#0 GCTGATTCAAGGTCACGGAAATTTCCTATTAGAACCCTTCTTTGTAAAATATATTCATCC 67
consensus_11060#1 GGTTCCTCCTGCTTTTATTGGTTTCTTTCT-GTTTCTAGTTTCGTAAAATATATTCATCC 119
consensus_11060#2 ------------------------------------------------------------
consensus_11060#3 ------------------------------------------------------------
consensus_11060#0 TATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCG 127
consensus_11060#1 TATTTTGAAGAAACAATTATTTATCACTTTTAATCATGATGAAAGCCTGGCAATTGGTCG 179
consensus_11060#2 ------------------------------------------------------------
consensus_11060#3 ------------------------------------------------------------
consensus_11060#0 ATATTAATGGTGAAGTGATCAACGAAGAAGATATTTCAAGTGTGGGTTCTGATTGGTCAT 187
consensus_11060#1 ATATTAATGGTGAAGTGATCAACGAAGAAGATATTTCAAGTGTGGGTTCTGATTGGTCAT 239
consensus_11060#2 ------------------------------------------------------------
consensus_11060#3 ------------------------------------------------------------
consensus_11060#0 TCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGAC 247
consensus_11060#1 TCATGCAATTCGATCGGGATGATGGATATCCAAGTCGCCCACATTCGATAGCTGGTCGAC 299
consensus_11060#2 -----------GAGGTTGATCCTCAACGTCCCAANTGTNTACGCCGNGGTCCACTAAATN 49
consensus_11060#3 ------------------------------------------------------------
consensus_11060#0 GATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTC-TGCGAACAGTGATTATAAC 306
consensus_11060#1 GATCAGATACTGAAGTCGAGCATGAATCTCGTTCACCTTC-TGCGAACAGTGATTATAAC 358
consensus_11060#2 AATCATGGTTTTCAGCGTCGTCAAGTTCGTTTGGGCAACGGTGGTCATNTACCTCATCAA 109
consensus_11060#3 --------------------------------------------------------TTTC 4
consensus_11060#0 TGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAAT 366
consensus_11060#1 TGTTATAGCTCTCATTGTAGTCTAGACAGATATAATGAGCCTCCCGTAAGATCGAAAAAT 418
consensus_11060#2 AGAAGTTAATAGAAAATCACGANATTACTTGA------TTTCGGTGATAT-TTGGCTTCT 162
consensus_11060#3 GGGCGC-AATATGCAATCAAGAAATTAATTGA------TTTTTGTGATAT-TTTGCT-CT 55
consensus_11060#0 GCTAACAAATCAAAAAACAAACATTTGTCAGGGAGTATTCCTGGAAATACACCAATTCCT 426
consensus_11060#1 GCTAACAAATCAAAAAACAAACATTTGTCAGGGAGTATTCCTGGAAATACACCAATTCCT 478
*** ** ** ** * * * *** * **
consensus_11060#2 ACAACATTGTCATAACGGATNTTNGGTGTTCAGNT---NGTNNGGTCACAT--------T 211
consensus_11060#3 ACAACATTGTAATAACGGATATTTGGTGTTCAGTT---TGTTTG-TCACAT--------T 103
consensus_11060#0 ATAACATCAAAAACCGAAATATTAAAATCTCATCCACGTAATGGATTACGACCTGGTCAT 486
consensus_11060#1 ATAACATCAAAAACCGAAATATTAAAATCTCATCCACGTAATGGATTACGACCTGGTCAT 538
* ***** * ** ** *** * * ** *
consensus_11060#2 GNATATTAGTGG-CAAATAAGAATTTACATGTGATNCTNNNNCATTACTTA-GNGTCTNA 269
consensus_11060#3 GA-TATTAGTTG-CCATTAGGACTTACCATG-GATTCCTTTAAATTACCTAAGGGCCTAA 160
consensus_11060#0 ATACATCAGTCCTCCGCTAGAAATTCCAATG-GAACACGTCAAAT-GTTGGCACGTTGGA 544
consensus_11060#1 ATACATCAGTCCTCCGCTAGAAATTCCAATG-GAACACGTCAAAT-GTTGGCACGTTGGA 596
** *** * ** * ** *** ** ** * *
consensus_11060#2 GTGTNATCCAATNAGCAAANATTCCCCACAAAAAT-----TTNNNACTCAACCCAACAGN 324
consensus_11060#3 GTGTATACC--TTAGGAAAAATTACCCCCAAA--------TTTGCCCTCACTCCAACAGC 210
consensus_11060#0 ATGCTTGTCG-TAAACAAAATAATCATACAAACCTATGCGTTGATTCTCAACGTTCCAAA 603
consensus_11060#1 ATGCTTGTCG-TAAACAAAATAATCATACAAACCTATGCGTTGATTCTCAACGTTCCAAA 655
** * * * *** * **** ** **** **
consensus_11060#2 TTCTTTCTCTT--NTTAAATT--TTAGGTAATNTTTACNCAACCCCNTGGGGTGTNCNTT 380
consensus_11060#3 TATATTCCATAAAATTTTATT--TATAACACCCTTCTCTGGGTGCTCCAATCCGGGTTTT 268
consensus_11060#0 TGTTTAC-GCCGTGGTCCACTAATTAATCATGGTTTTCAGCGTCGTCAAGTTCGTATGGG 662
consensus_11060#1 TGTTTACCGCCGTGGTCCACTAATTAATCATGGTTNTCAGCGTCGTCAAGTTCGTATGGG 715
* * * * * * * * ** * *
consensus_11060#2 ------------------------------------------------------------
consensus_11060#3 ------------------------------------------------------------
consensus_11060#0 CAACGGTGGTCATATACCTCATCAAAGAAGTTAATAGAAAATCAAGAAATTAATTGATTT 722
consensus_11060#1 CAACGGTGGT-ATAT--------------------------------------------- 729
consensus_11060#2 ------------------------------------------------------------
consensus_11060#3 ------------------------------------------------------------
consensus_11060#0 TTGTGATATTTTGCTTCTACAACATTGTAATAACGGATATTTGGTGTTCAGTTTGTTTGT 782
consensus_11060#1 ------------------------------------------------------------
consensus_11060#2 ----------------------
consensus_11060#3 ----------------------
consensus_11060#0 CACATTGATATTAGTGGCAATA 804
consensus_11060#1 ----------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||