These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11065#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 25 consensus length = 738 fasta sequence [CCAGCCAAGATTCGGCACGAGGCTTAAATTTAGAGGACGCATTGATCTCATCGTCTTAAGTTACTTGGATTTCAAATTGTTTA-CGTCCTTTTAATTAAACGAATATGTTGTTACCAAATCAACCTGCTCCTGATTTTGAAGGTACTGCTGTTATTGGCACGGAATTACGTCCAATTAGTTTGAGTCAATTTCAAGGAAAATATGTGTTACTGGTATTTTATCCACTTGACTTCACTTTTGTTTGTCCCACGGAACTAATTGCATTCAGTGAAAGAGCTGCTGAGTTTCAATCTAGAGGATGTCAAGTAATCGCATGCTCAACTGATTCAGTTTATGCTCATTTGGCATGGACAAAATTGGATCGCAAAGCTGGTGGTTTGGGGCAAATGAATATACCTTTGCTGTCCGATAAAAACCTAAGGATATCACGAGCGTACGAGGTTCTTGACGAACAGGAAGGTCATGCATTCAGAGGTATGTTCCTCATTGATCGCAAAGGGATTTTACGTCAAATTACCGTTAACGATCGCCCTGTAGGTAGATCAGTTGATGAGGCGATTCGTCTCTTGGATGCTTTTATTTTCTTTGAGAAACATGGCGAAGTTTGTCCAGCGAACTGGAAACCAAATTCAGCAACAATAAAACCTGATCCTGTTGCTTCTCTCTCCTACTTCTCCTCTGTGCA-CTGAGGTGTTTTGTATTGATGTCATA-TTTTAGTTAACATTAATAAACAGTTTT] [+] EMBL CD080767 [CCAGCCAAGATTCGGCACGAGGCTTAAATTTAGAGGACGCATTGATCTCATCGTCTTAAGTTACTTGGATTTCAAATTGTTTA CGTCCTTTTAATTAAACGAATATGTTGTTACCAAATCAACCTGCTCCTGATTTTGAAGGTACTGCTGTTATTGGCACGGAATTACGTCCAATTAGTTTGAGTCAATTTCAAGGAAAATATGTGTTACTGGTATTTTATCCACTTGACTTCACTTTTGTTTGTCCCACGGAACTAATTGCATTCAGTGAAAGAGCTGCTGAGTTTCAATCTAGAGGATGTCAAGTAATCGCATGCTCAACTGATTCAGTTTATGCTCATTTGGCATGGACAAAATTGGATCGCAAAGCTGGTGGTTTGGGGCAAATGAATATACCTTTGCTGTCCGATAAAAACCTAAGGATATCACGAGCGTACGAGGTTCTTGACGAACAGGAAGGTCATGCATTCAGAGGTATGTTCCTCATTGATCGCAAAGGGATTTTACGTCAAATTACCGTTAACGATCGCCCTGTAGGTAGATCAGTTGATGAGGCGATTCGTCTCTTGGATGCTTTTATTTTCTTTGAGAAACATGGCGAAGTTTGTCCAGCGAACTGGAAACCAAATTCAGCAACAATAAAACCTGATCCTGTTGCTTCTCTCTCCTACTTCTCCTCTGTGCA CTGAGGTGTTNTGTATTGATGTCATA TTTTAGTTAACATTAATAAACAGTTT ] [+] EMBL AF157561 [ ATTTAGAGGACGCATTGATCTCATCGTCTTAAGTTACTTGGATTTCAAATTGTTTA CCTTTTAATTAAACGAATATGTTGTTACCAAATCAACCTGCTCCTGATTTTGAAGGTACTGCTGTTATTGGCACGGAATTACGTCCAATTAGTTTGAGTCAATTTCAAGGAAAATATGTGTTACTGGTATTTTATCCACTTGACTTCACTTTTGTTTGTCCCACGGAACTAATTGCATTCAGTGAAAGAGCTGCTGAGTTTCAATCTAGAGGATGTCAAGTAATCGCATGCTCAACTGATTCAGTTTATGCTCATTTGGCATGGACAAAATTGGATCGCAAAGCTGGTGGTTTGGGGCAAATGAATATACCTTTGCTGTCCGATAAAAACCTAAGGATATCACGAGCGTACGAGGTTCTTGACGAACAGGAAGGTCATGCATTCAGAGGTATGTTCCTCATTGATCGCAAAGGGATTTTACGTCAAATTACCGTTAACGATCGCCCTGTAGGTAGATCAGTTGATGAGGCGATTCGTCTCTTGGATGCTTTTATTTTCTTTGAGAAACATGGCGAAGTTTGTCCAGCGAACTGGAAACCAAATTCAGCAACAATAAAACCTGATCCTGTTGCTTCTCTCTCCTACTTCTCCTCTGTGCA CTGAGGTGTTTTGTATTGATGTCATA TTTTAGTTAACATTAATAAACAGTTTT] [+] EMBL CD078539 [ ATTGATCTCATCGTCTTAAGTTACTTGGATTTCAAATTGTTTA CGTCCTTTTAATTAAACGAATATGTTGTTACCAAATCAACCTGCTCCTGATTTTGAAGGTACTGCTGTTATTGGCACGGAATTACGTCCAATTAGTTTGAGTCAATTTCAAGGAAAATATGTGTTACTGGTATTTTATCCACTTGACTTCACTTTTGTTTGTCCCACGGAACTAATTGCATTCAGTGAAAGAGCTGCTGAGTTTCAATCTAGAGGATGTCAAGTAATCGCATGCTCAACTGATTCAGTTTATGCTCATTTGGCATGGACAAAATTGGATCGCAAAGCTGGTGGTTTGGGGCAAATGAATATACCTTTGCTGTCCGATAAAAACCTAAGGATATCACGAGCGTACGAGGTTCTTGACGAACAGGAAGGTCATGCATTCAGAGGTATGTTCCTCATTGATCGCAAAGGGATTTTACGTCAAATTACCGTTAACGATCGCCCTGTAGGTAGATCAGTTGATGAGGCGATTCGTCTCTTGGATGCTTTTATTTTCTTTGAGAAACATGGCGAAGTTTGTCCAGCGAACTGGAAACCAAATTCAGCAACAATAAAACCTGA ] [+] EMBL AI975037 [ TGATCTCATCGTCTTAAGTTACTTGGATTTCAAATTGTTTA CGTCCTTTTAATTAAACGAATATGTTGTTACCAAATCAACCTGCTCCTGATTTTGAAGGTACTGCTGTTATTGGCACGGAATTACGTCCAATTAGTTTGAGTCAATTTCAAGGAAAATATGTGTTACTGGTATTTTATCCACTTGACTTCACTTTTGTTTGTCCCACGGAACTAATTGCATTCAGTGAAAGAGCTGCTGAGTTTCAATCTAGAGGATGTCAAGTAATCGCATGCTCAACTGATTCAGTTTATGCTCATTTGGCATGGACAAAATTGGATCGCAAAGCTGGTGGTTTGGGGCAAATGAATATACCTTTGCTGTCCGATAAAAACCTAAGGATATCACGAGCGTACGAGGTTCTTGACGAACAGGAAGGTCATGCATTCAGAGGTATGTTCCTCATTGATCGCAAAGGGATTNTACGTCAAATTACCGTT ACGATCGCCC ] [-] EMBL CD074709 [ TTAAGTTACTGGGATTTCAAA TGTTTANCGTCCTTTTAATTAAACGAATATGTTG TACCAAATCAACCTGCTCCTGATTTTGAAGGTACTGCTGTTATTGGCACGGAATTACGTCCAATTAGTTTGAGTCAATTTCAAGGAAAATATGTGTTACTGGTATTTTATCCACTTGACTTCACTTTTGTTTGTCCCACGGAACTAATTGCATTCAGTGAAAGAGCTGCTGAGTTTCAATCTAGAGGATGTCAAGTAATCGCATGCTCAACTGATTCAGTTTATGCTCATTTGGCATGGACAAAATTGGATCGCAAAGCTGGTGGTTTGGGGCAAATGAATATACCTTTGCTGTCCGATAAAAACCTAAGGATATCACGAGCGTACGAGGTTCTTGACGAACAGGAAGGTCATGCATTCAGAGGTATGTTCCTCATTGATCGCAAAGGGATTTTACGTCAAATTACCGTTAACGATCGCCCTGTAGGTAGATCAGTTGATGAGGCGATTCGTCTCTTGGATGCTTTTATTTTCTTTGAGAAACATGGCGAAGTTTGTCCAGCGAACTGGAAACCAAATTCAGCAACAATAAAACCTGATCCTGTTGCTTCTCTCTCCTACTTCTCCTCTGTGCA CTGAGGTGTTTTGTATTGATGTCATA TTTTAGTTAACATTAATAAACAGTTTT] [+] EMBL CD078755 [ acgaggTGGATTTCAAATTGTTTA CATCCTTTTAATTAAACGAATATGTTGTTACCAAATCAACCTGCTCCTGATTTTGAAGGTACTGCTGTTATTGGCACGGAATTACGTCCAATTAGTTTGAGTCAATTTCAAGGAAAATATGTGTTACTGGTATTTTATCCACTTGACTTCACTTTTGTTTGTCCCACGGAACTAATTGCATTCAGTGAAAGAGCTGCTGAGTTTCAATCTAGAGGATGTCAAGTAATCGCATGCTCAACTGATTCAGTTTATGCTCATTTGGCATGGACAAAATTGGATCGCAAAGCTGGTGGTTTGGGGCAAATGAATATACCTTTGCTGTCCGATAAAAACCTAAGGATATCACGAGCGTACGAGGTTCTTGACGAACAGGAAGGTCATGCATTCAGAGGTATGTTCCTCATTGATCGCAAAGGGATTTTACGTCAAATTACCGTTAACGATCGCCCTGTAGGTAGATCAGTTGATGAGGCGATTCGTCTCTTGGATGCTTTTATTTTCTTTGAGAAACATGGCGAAGTTTGTCCAGCGAACTGGAAACCAAATTCAGCAANCATAAAACCTGATCCTGTTGCTTCTCTCTTCTACTTCTCCTCTGAGCACCTGAGGTG TTTGTATTGATGTCATA TTTTAGTTACCATTAATAAACAGTTTT] [+] EMBL CD200107 [ AAGGTACTGCTGCTATTGGCACGGAATTACGTCCAATTAGTTTGAGTCAATTTCAAGGAAAATATGTGTTACTGGTATTTTATCCACTTGACTTCACTTTTGTTTGTCCCACGGAACTAATTGCATTCAGTGAAAGAGCTGCTGAGTTTCAATCTAGAGGATGTCAAGTAATCGCATGCTCAACTGATTCAGTTTACGCTCATTTGGCATGGACAAAATTGGATCGCAAAGCTGGTGGTTTGGGGCAAATGAATATACCTTTGCTGTCCGATAAAAACCTA ] [+] EMBL CD200144 [ AAGGTACTGCTGTTATTGGCACGGAATTACGTCCAATTAGTTTGAGTCAATTTCAAGGAAAATATGTGTTACTGGTATTTTATCCACTTGACTTCACTTTTGTTTGTCCCACGGAACTAATTGCATTCAGTGAAAGAGCTGCTGAGTTTCAATCTAGAGGATGTCAAGTAATCGCATGCTCAACTGATTCAGTTTATGCTCATTTGGCATGGACAAAATTGGATCGCAAAGCTGGTGGTTTGGGGCAAATGAATATACCTTTGCTGTCCGATAAAAACCTA ] [-] EMBL CD185083 [ ATTAGTTGGAGTCAATTTCAAGGAAAATATGTGTTACTGGTATTTAATCCACTTGACTTCACTTTTGTTTGTCCCACGGAACTAATTGCATTCAGTGAAAGAGCTGCTGAGTTTCAATCTAGAGGATGTCAAGTAATCGCATGCTCAACTGATTCAGTTTATGCTCATTTGGCATGGACAAAATTGGATCGCAAAGCTGGTGGTTTGGGGCAAATGAATATACCTTTGCTGTCCGATAAAAACCTAAGGATATCACGAGCGTACGAGGTTCTTGACGAACAGGAAGGTCATGCATTCAGAGGTATGTTCCTCATTGATCGCAAAGGGATTTTACGTCAAATTACCGTTAACGATCGCCCTGTAGGTAGATCAGTTGATGAGGCGATTCGTCTCTTGGATGCTCTTATTTTCTTTGAGAAACATGGCG ] [-] EMBL CD074691 [ GAGTCAATTTCAAGGAAAATATGTGTTACTGGTATTTTATCCACTTGACTTCACTTTTGTTTGTCCCACGGAACTAATTGCATTCAGTGAAAGAGCTGCTGAGTTTCAATCTAGAGGATGTCAAGTAATCGCATGCTCAACTGATTCAGTTTATGCTCATTTGGCATGGACAAAATTGGATCGCAAAGCTGGTGGTTTGGGGCAAATGAATATACCTTTGCTGTCCGATAAAAACCTAAGGATATCACGAGCGTACGAGGTTCTTGACGAACAGGAAGGTCATGCATTCAGAGGTATGTTCCTCATTGATCGCAAAGGGATTTTACGTCAAATTACCGTTAACGATCGCCCTGTAGGTAGATCAGTTGATGAGGCGATTCGTCTCTTGGATGCTTTTATTTTCTTTGAGAAACATGGCGAAGTTTGTCCAGCGAACTGGAAACCAAATTCAGCAACAATAAAACCTGATCCTGTTGCTTCTCTCTCCTACTTCTCCTCTGTGCA CTGAGGTGTTTTGTATTGATGTCATA TTTTAGTTAACATTAATAAACAGTTTT] [-] EMBL CD180837 [ CAAGGAAAATATGTGTTACTGGTATTTTATCCACTTGACTTCACTTTTGTTTGTCCCACGGAACTAATTGCATTCAGTGAAAGAGCTGCTGAGTTTCAATCTAGAGGATGTCAAGTAATCGCATGCTCAACTGATTCAGTTTATGCTCATTTGGCATGGACAAAATTGG ] [-] EMBL CD138749 [ CCACGGAACTAATTGCATTCAGTGAAAGAGCTGCTGAGTTTCAATCTAGAGGATGTCAAGTAATCGCATGCTCAACTGATTCAGTTTATGCTCATTTGGCATGGACAAAATTGGATCGCAAAGCTGGTGGTTTGGGGCAAATGAATATACCTTTGCTGTCCGATAAAAACCTAAGGATATCACGAGCGTACGAGGTTCTTGACGAACAGGAAGGTCATGCATTCAGAGGTATGTTCCTCATTGATCGCAAAGGGATTTTACGCCAAATTACCGTTAACGATCGCCCTGTAGGTAGATCAGTTGATG ] [-] EMBL CD073006 [ AACTAATTGCATTCAGTGAAAGAGCTGCTGAGTTTCAATCTAGAGGATGTCAAGTAATCGCATGCTCAACTGATTCAGTTTATGCTCATTTGGCATGGACAAAATTGGATCGCAAAGCTGGTGGTTTGGGGCAAATGAATATACCTTTGCTGTCCGATAAAAACCTAAGGATATCACGAGCGTACGAGGTTCTTGACGAACAGGAAGGTCATGCATTCAGAGGTATGTTCCTCATTGATCGCAAAGGGATTTTACGTCAAATTACCGTTAACGATCGCCCTGTAGGTAGATCAGTTGATGAGGCGATTCGTCTCTTGGATGCTTTTATTTTCTTTGAGAAACATGGCGAAGTTTGTCCAGCGAACTGGAAACCAAATTCAGCAACAATAAAACCTGATCCTGTTGCTTCTCTCTCCTACTTCTCCTCTGTGCA CTGAGGTGTTTTGTATTGATGTCATA TTTTAGTTAACATTAATAAACAGTTTT] [+] EMBL CD192229 [ AAAGAGCTGCTGAGTTTCAATCTAGAGGATGTCAAGTAATCGCATGCTCAACTGATTCAGTTTATGCTCATTTGGCATGGACAAAATTGGATCGCAAAGCTGGTGGTTTGGGGCAAATGAATATACCTTTGCTGTCCGATAAAAACCTAAGGATATCACGAGCGTACGAGGTTCTTGACGAACAGGAAGGTCATGCATTCAGAGGTATGTTCCTCATTGATCGCAAAGGGATTTTACGTCAAATTACCGTTAACGATCGCCCTGTAGGTAGATCAGTTGATGAGGCGATTCGTCTCTTGGATGCTTTTATTTTCTTTGAGAAACATGGCGAAGTTTGTCCAGCGAACTGGAAACCAAATTCAGCAACAATAAAACCTGATCCTGTTGCTTCTCTCTCCTACTTCTCCTCTGTGCA CTGAGGT ] [-] EMBL CD171068 [ acatcCTAGAGGATGTCAAGTAATCGCATGCTCAACTGATTCAGTTTATGCTCATTTGGCATGGACAAAATTGGATCGCAAAGCTGGTGGTTTGGGGCAAATGAATATACCTTTGCTGTCCGATAAAAACCTAAGGATATCACGAGCGTACGAGGTTCTTGACGAACAGGAAGGTCATGCATTCAGAGGTATGTTCCTCATTGATCGCAAAGGGATTTTACGTCAAATTACCGTTAACGATCGCCCTGTAGGTAGATCAGTTGATGAGGCGATTCGTCTCTTGGATGCTTTTATTTTCTTTGAGAAACATGGCGAAGTTTGTCCAGCGAACTGGAAACCAAATTCAGCAACAATAAAACCTGATCCTGTTGCTTCTCTCTCCTACTTCTCCTCTGTGCA CTGAGGTGTTTTGTATTGATGTC ] [+] EMBL CD151848 [ GGATGTCAAGTAATCGCATGCTCAACTGATTCAGTTTATGCTCATTTGGCATGGACAAAATTGGATCGCAAAGCTGGTGGTTTGGGGCAAATGAATATACCTTTGCTGTCCGATAAAAACCTAAGGATATCACGAGCGTACGAGGTTCTTGACGAACAGGAAGGTCATGCATTCAGAGGTATGTTCCTCATTGATCGCAAAGGGATTTTACGTCAAATTACCGTTAACGATCGCCCTGTAGGTAGATCAGTTGATGAGGCGATTCGTCTCTTGGATGCTTTTATTTTCTTTGAGAAACATGGCGAAGTTTGTCCAGCGAACTGGAAACCAAATTCAGCAACAATAAAACCTGATCCTGTTGCTTCTCTCTCC ] [-] EMBL CD119127 [ TCAAGTAATCGCATGCTCAACTGATTCAGTTTATGCTCATTTGGCATGGACAAAATTGGATCGCAAAGCTGGTGGTTTGGGGCAAATGAATATACCTTTGCTGTCCGATAAAAACCTAAGGATATCACGAGCGTACGAGGTTCTTGACGAACAGGAAGGTCATGCATTCAGAGGTATGTTCCTCATTGATCGCAAAGGGATTTTACGTCAAATTACCGTTAACGATCGCCCTGTAGGTAGATCAGTTGATGAGGCGATTCGTCTCTTGGATGCTTTTATTTTCTTTGAGAAACATGGCGAAGTTTGTCCAGCGAACTGGAAACCAAATTCAGCAACAATAAAACCTGATCCTGTTGCTTCTCTCTCCTACTTCTCCTCTGTGCA CTGAGGTG ] [-] EMBL CD119071 [ TCAAGTAATCGCATGCTCAACTGATTCAGTTTATGCTCATTTGGCATGGACAAAATTGGATCGCAAAGCTGGTGGTTTGGGGCAAATGAATATACCTTTGCTGTCCGATAAAAACCTAAGGATATCACGAGCGTACGAGGTTCTTGACGAACAGGAAGGTCATGCATTCAGAGGTATGTTCCTCATTGATCGCAAAGGGATTTTACGTCAAATTACCGTTAACGATCGCCCTGTAGGTAGATCAGTTGATGAGGCGATTCGTCTCTTGGATGCTTTTATTTTCTTTGAGAAACATGGCGAAGTTTGTCCAGCGAACTGGAAACCAAATTCAGCAACAATAAAACCTGATCCTGTTGCTTCTCTCTCCTACTTCTCCTCTGTGCA CTGAGGTG ] [-] EMBL CD119211 [ TCAAGTAATCGCATGCTCAACTGATTCAGTTTATGCTCATTTGGCATGGACAAAATTGGATCGCAAAGCTGGTGGTTTGGGGCAAATGAATATACCTTTGCTGTCCGATAAAAACCTAAGGATATCACGAGCGTACGAGGTTCTTGACGAACAGGAAGGTCATGCATTCAGAGGTATGTTCCTCATTGATCGCAAAGGGATTTTACGTCAAATTACCGTTAACGATCGCCCTGTAGGTAGATCAGTTGATGAGGCGATTCGTCTCTTGGATGCTTTTATTTTCTTTGAGAAACATGGCGAAGTTTGTCCAGCGAACTGGAAACCAAATTCAGCAACAATAAAACCTGATCCTGTTGCTTCTCTCTCCTACTTCTCCTCTGTGCA CTGAGGTG ] [-] EMBL CD141320 [ ATCGCATGCTCAACTGATTCAGTTTATGCTCATTTGGCATGGACAAAATTGGATCGCAAAGCTGGTGGTTTGGGGCAAATGAATATACCTTTGCTGTCCGATAAAAACCTAAGGATATCACGAGCGTACGAGGTTCTTGACGAACAGGAAGGTCATGCATTCAGAGGTATGTTCCTCA ] [+] EMBL CD192355 [ GCATGCTCAACTGATTCAGTTTATGCTCATTTGGCATGGACAAAATTGGATCGCAAAGCTGGTGGTTTGGGGCAAATGAATATACCTTTGCTGTCCGATAAAAACCTAAGGATATCACGAGCGTACGAGGTTCTTGACGAACAGGAAGGTCATGCATTCAGAGGTATGTTCCTCATTGATCGCAAAGGGATTTTACGTCAAATTACCGTTAACGATCGCCCTGTAGGTAGATCAGTTGATGAGGCGATTCGTCTCTTGGATGCTTTTATTTTCTTTGAGAAACATGGCGAAGTTTGTCCAGCGAACAGGAAACCAAATTCAGCAACAATAAAACCTGATCCTGTTGCTTCTCTCTCCTACTTCTCCTCTGTGCA CTGAGGT ] [+] EMBL CD191976 [ ACGAGGTTCTTGACGAACAGGAAGGTCATGCATTCAGAGGTATGTTCCTCATTGATCGCAAAGGGATTTTACGTCAAATTACCGTTAACGATCGCCCTGTAGGTAGATCAGTTGATGAGGCGATTCGTCTCTTGGATGCTTTTATTTTCTTTGAGAAACATGGCGAAGTTTGTCCAGCGAACTGGAAACCAAATTCAGCAACAATAAAACCTGATCCTGTTGCTTCTCTCTCCTACTTCTCCTCTGTGCA CTGAGGT ] [-] EMBL CD192808 [ CGAGGTTCTTGACGAACAGGAAGGTCATGCATTCAGAGGTATGTTCCTCATTGATCGCAAAGGGATTTTACGTCAAATTACCGTTAACGAGCGCCCTGTAGGTAGATCAGTTGATGAGGCGATTCGTCTCTTGGATGCTTTTATTTTCTTTGAGAAACATGGCGAAGTTTGTCCAGCGAACTGGAAACCAAATTCAGCAACAATAAAACCTGATCCTGTTGCTTCTCTCTCCTACTTCTCCTCTGTGCA CTGAGGTG ] [-] EMBL CD141292 [ CAGGAAGGTCATGCATTCAGAGGTATGTTCCTCATTGATCGCAAAGGGATTTTACGTCAAATTAGCGTTAACGATCGCCCTGTAGGTAGATCAGTTGATGAGGCGATTCGTCTCTTGGATGCTTTTATTTTCTTTGAGAAACATGGCGAAGTTTGTCCAGCGACCTGGAAGCCAAATTCAGCAACAATAAAACCTGATCCTGTTGCTTCTCTCT ] [-] EMBL SMT14649 [ TTCTTTGAGAAACATGGCGAAGTTTGTCCAGCGAACTGGAAACCAAATTCAGCAACAATAAAACCTGATCCTGTTGCTTCTCTCTCCTACTTCTCCTCTGTGCA CTGAGGTGTTTTGTATTGATGTCATATTTTTAGT ACATTAATAAACAGTTTT] consensusID : consensus_11065#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 718 fasta sequence [TCGGCTCGAGGGCGGACGCATTGATCTCATCGTCTTAAGTTACTTTGATTTCAAATTGTTTACGTCCTTTTAATTAAACGAATATGTTGTTACCAAATCAACCTGCTCCTGATTTTGAAGGTACTGCTGTTATTGGCACGGAATTACGTCCAATTAGTTTGAGTCAATTTCAAGGAAAATATGTGTTACTGGTATTTTATCCACTTGACTTCACTTTTGTTTGTCCCACGGAACTAATTGCA-TTCAGTGAAAGAGCTGCTGAGTTTCAATCTAGAGGATGTCAAGTAATCGCATGCTCAACTGATTCAGTTTATGCTCATTTGGCATGGACAAAATTGGATCGCAAAGCTGGTGGTTTGGGGCAAATGAATATACCTTTGCTGTCCGATAAAAACCTAAGGATATCACGAGCGTACGAGGTTCTTGACGAACAGGAAGGTCATGCATTCAGAGGTATGTTCCTCATTGATCGCAAAGGGATTTTACGTCAAATTACCGTTAACGATCGCCCTGTAGGTAGATCAGTTGATGAGGCGATTCGTCTCTTGGATGCTTTTATTTTCTTTGAGAAACATGGCGAAGTTTGTCCAGCGAACTGGAAACCAAATTCAGCAACAATAAAACCTGATCCTGTTGCTTCTCTCTCCTACTTCTCCTCTGTGCACTGAGGTGTTTTGTATTGATGTCATATTTTAGTTAACATTAATAAACAGTTTTT] [+] EMBL CD081421 [TCGGCTCGAGGGCGGACGCATTGATCTCATCGTCTTAAGTTACTTTGATTTCAAATTGTTTACGTCCTTTTAATTAAACGAATATGTTGTTACCAAATCAACCTGCTCCTGATTTTGAAGGTACTGCTGTTATTGGCACGGAATTACGTCCAATTAGTTTGAGTCAATTTCAAGGAAAATATGTGTTACTGGTATTTTATCCACTTGACTTCACTTTTGTTTGTCCCACGGAACTAATTGCA TTCAGTGAAAGAGCTGCTGAGTTTCAATCTAGAGGATGTCAAGTAATCGCATGCTCAACTGATTCAGTTTATGCTCATTTGGCATGGACAAAATTGGATCGCAAAGCTGGTGGTTTGGGGCAAATGAATATACCTTTGCTGTCCGATAAAAACCTAAGGATATCACGAGCGTACGAGGTTCTTGACGAACAGGAAGGTCATGCATTCAGAGGTATGTTCCTCATTGATCGCAAAGGGATTTTACGTCAAATTACCGTTAACGATCGCCCTGTAGGTAGATCAGTTGATGAGGCGATTCGTCTCTTGGATGCTTTTATTTTCTTTGAGAAACATGGCGAAGTTTGTCCAGCGAACTGGAAACCAAATTCAGCAACAATAAAACCTGATCCTGTTGCTTCTCTCTCCTACTTCTCCTCTGTGCACTGAGGTGTTTTGTATTGATGTCATATTTTAGTTAACATTAATAAACAGTTTT ] [-] EMBL CD073215 [ CCTGA TTTGAAGGTACTGCTG TATTGGCACGGAATTACGTCCAATTAGTTTGAGTCAATTTCAAGGAAAATATGTGTTACTGGTATTTTATCCACTTGACTTCACTTTTGTTTGTCCCACGGAACTAATTGCA TTCAGTGAAAGAGCTGCTGAGTTTCAATCTAGAGGATGTCAAGTAATCGCATGCTCAACTGATTCAGTTTATGCTCATTTGGCATGGACAAAATTGGATCGCAAAGCTGGTGGTTTGGGGCAAATGAATATACCTTTGCTGTCCGATAAAAACCTAAGGATATCACGAGCGTACGAGGTTCTTGACGAACAGGAAGGTCATGCATTCAGAGGTATGTTCCTCATTGATCGCAAAGGGATTTTACGTCAAATTACCGTTAACGATCGCCCTGTAGGTAGATCAGTTGATGAGGCGATTCGTCTCTTGGATGCTTTTATTTTCTTTGAGAAACATGGCGAAGTTTGTCCAGCGAACTGGAAACCAAATTCAGCAACAATAAAACCTGATCCTGTTGCTTCTCTCTCCTACTTCTCCTCTGTGCACTGAGGTGTTTTGTATTGATGTCATATTTTAGTTAACATTAATAAACAGTTTTT] [-] EMBL CD075247 [ CCACGGAACTAA TGCATTTCAGTGAAAGAGCTGCTGAGTTTCAATCTAGAGGATGTCAAGTAATCGCATGCTCAACTGATTCAGTTTATGCTCATTTGGCATGGACAAAATTGGATCGCAAAGCTGGTGGTTTGGGGCAAATGAATATACCTTTGCTGTCCGATAAAAACCTAAGGATATCACGAGCGTACGAGGTTCTTGACGAACAGGAAGGTCATGCATTCAGAGGTATGTTCCTCATTGATCGCAAAGGGATTTTACGTCAAATTACCGTTAACGATCGCCCTGTAGGTAGATCAGTTGATGAGGCGATTCGTCTCTTGGATGCTTTTATTTTCTTTGAGAAACATGGCGAAGTTTGTCCAGCGAACTGGAAACCAAATTCAGCAACAATAAAACCTGATCCTGTTGCTTCTCTCTCCTACTTCTCCTCTGTGCACTGAGGTGTTTTGTATTGATGTCATATTTTAGTTAACATTAATAAACAGTTTTT] consensusID : consensus_11065#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence [CTCGCAGGCCANAATTCGGCACGAGGCTTAAATTTAGAGGACGCATTGATCTCATCGTCTTAAGTTACTTGGATTTCAAATTGTTTACGTCCTTTTAATTAAACGAATATGTTGTTACCAAATCAACCTGCTCCTGATTTTGAAGGTACTGCTGTTATTGGCACGGAATTACGTCCAATTAGTTTGAGTCAATTTCAAGGAAAATATGTGTTACTGGTATTTTGTCCCACGGAACTAATTGCATTCAGTGAAAGAGCTGCTGAGTTTCAATCTAGAGGATGTCAAGTAATCGCATGCTCAACTGATTCAGTTTATGCTCATTTGGCATGGACAAAATTGGATCGCAAAGCTGGTGNNNNNNNNNNNNNNNNTATACCTTTGCTGTCCGATAAAAACCTAAGGATATCACGAGCGTACGAGGTTCTTGACGAACAGGAAGGTCATGCATTCAGAGGTATGTTCCTCATTGATCGCAAAGGGATTTTACGTCAAATTACCGTTAACGATCGCCCTGTAGGTAGATCAGTTGATGAGGCGATTCGTCTCTTGGATGCTTTTATTTTCTTTGAGAAACATGGCGAAGTTTGTCCAGCGAACTGGAAACCAAATTCAGCAACAATAAAACCTGATCCTGTTGCTTCTCTCTCCTACTTCTCCTCTGTGCACTGAGGTGTTTTGTAT] [+] EMBL CD080875 [CTCGCAGGCCANAATTCGGCACGAGGCTTAAATTTAGAGGACGCATTGATCTCATCGTCTTAAGTTACTTGGATTTCAAATTGTTTACGTCCTTTTAATTAAACGAATATGTTGTTACCAAATCAACCTGCTCCTGATTTTGAAGGTACTGCTGTTATTGGCACGGAATTACGTCCAATTAGTTTGAGTCAATTTCAAGGAAAATATGTGTTACTGGTATTTTGTCCCACGGAACTAATTGCATTCAGTGAAAGAGCTGCTGAGTTTCAATCTAGAGGATGTCAAGTAATCGCATGCTCAACTGATTCAGTTTATGCTCATTTGGCATGGACAAAATTGGATCGCAAAGCTGGTGNNNNNNNNNNNNNNNNTATACCTTTGCTGTCCGATAAAAACCTAAGGATATCACGAGCGTACGAGGTTCTTGACGAACAGGAAGGTCATGCATTCAGAGGTATGTTCCTCATTGATCGCAAAGGGATTTTACGTCAAATTACCGTTAACGATCGCCCTGTAGGTAGATCAGTTGATGAGGCGATTCGTCTCTTGGATGCTTTTATTTTCTTTGAGAAACATGGCGAAGTTTGTCCAGCGAACTGGAAACCAAATTCAGCAACAATAAAACCTGATCCTGTTGCTTCTCTCTCCTACTTCTCCTCTGTGCACTGAGGTGTTTTGTAT] consensusID : consensus_11065#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 304 fasta sequence [AATGAATATACCTTTGCTGTCCGATAAAAACCTAAGGATATCACGAGCGTACGAGGTTCTTGACGAACAGGAAGGTCATGCATTCAGAGGTATGTTCCTCATTGATCGCAAAGGGATTTTACGTCAAATTACCGTTAACGATCGCCCTGTAGGTAGATCAGTTGATGAGGCGATTCGTCTCTTGGATGCTTTTATTTTCTTTGAGAAACATGGCGAAGTTTGTCCAGCGAACTGGAAACCAAATTCAGCAACAATAAAACCTGATCCTGTTGCTTCTCTATCATAATCGACCCCAATAGAATTC] [-] EMBL CD193290 [AATGAATATACCTTTGCTGTCCGATAAAAACCTAAGGATATCACGAGCGTACGAGGTTCTTGACGAACAGGAAGGTCATGCATTCAGAGGTATGTTCCTCATTGATCGCAAAGGGATTTTACGTCAAATTACCGTTAACGATCGCCCTGTAGGTAGATCAGTTGATGAGGCGATTCGTCTCTTGGATGCTTTTATTTTCTTTGAGAAACATGGCGAAGTTTGTCCAGCGAACTGGAAACCAAATTCAGCAACAATAAAACCTGATCCTGTTGCTTCTCTATCATAATCGACCCCAATAGAATTC] consensusID : consensus_11065#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 263 fasta sequence [GTCGGGCGAGAAGTTCGTTTTAAATTTAGAGGACGCATTGATCTCATCGTCTTAAGTTACTTGGATTCAAATTGTTTACGTCCTTTTAATTAAACGAATATGTTGTTACCAAATCAACCTGCTCCTGATTTTGAAGGTACTGCTGTTATTGGCACGGAATTACGTCCAATTAGTTTGAGTCAATTTCAAGGAAAATAAGGTGTTACTGGTATTTTTTATCCACTTGACTCACTTTTGTTTGTCCCCGGGACTAATGCATTCAG] [+] EMBL SMAA25542 [GTCGGGCGAGAAGTTCGTTTTAAATTTAGAGGACGCATTGATCTCATCGTCTTAAGTTACTTGGATTCAAATTGTTTACGTCCTTTTAATTAAACGAATATGTTGTTACCAAATCAACCTGCTCCTGATTTTGAAGGTACTGCTGTTATTGGCACGGAATTACGTCCAATTAGTTTGAGTCAATTTCAAGGAAAATAAGGTGTTACTGGTATTTTTTATCCACTTGACTCACTTTTGTTTGTCCCCGGGACTAATGCATTCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11065#2 CTCGCAGGCCANAATTCGGCACGAGGCTTAAATTTAGAGGACGCATTGATCTCATCGTCT 60 consensus_11065#3 ------------------------------------------------------------ consensus_11065#1 -------------------------TCGGCTCGAGGGCGGACGCATTGATCTCATCGTCT 35 consensus_11065#0 ----CCAGCCAAGATTCGGCACGAGGCTTAAATTTAGAGGACGCATTGATCTCATCGTCT 56 consensus_11065#4 ------------------------------------------------------------ consensus_11065#2 TAAGTTACTTGGATTTCAAATTGTTTACGTCCTTTTAATTAAACGAATATGTTGTTACCA 120 consensus_11065#3 ------------------------------------------------------------ consensus_11065#1 TAAGTTACTTTGATTTCAAATTGTTTACGTCCTTTTAATTAAACGAATATGTTGTTACCA 95 consensus_11065#0 TAAGTTACTTGGATTTCAAATTGTTTACGTCCTTTTAATTAAACGAATATGTTGTTACCA 116 consensus_11065#4 ------------------------------------------------------------ consensus_11065#2 AATCAACCTGCTCCTGATTTTGAAGGTACTGCTGTTATTGGCACGGAATTACGTCCAATT 180 consensus_11065#3 ------------------------------------------------------------ consensus_11065#1 AATCAACCTGCTCCTGATTTTGAAGGTACTGCTGTTATTGGCACGGAATTACGTCCAATT 155 consensus_11065#0 AATCAACCTGCTCCTGATTTTGAAGGTACTGCTGTTATTGGCACGGAATTACGTCCAATT 176 consensus_11065#4 ------------------------------------------------------------ consensus_11065#2 AGTTTGAGTCAATTTCAAGGAAAATATGTGTTACTGGTATTTT----------------- 223 consensus_11065#3 ------------------------------------------------------------ consensus_11065#1 AGTTTGAGTCAATTTCAAGGAAAATATGTGTTACTGGTATTTTATCCACTTGACTTCACT 215 consensus_11065#0 AGTTTGAGTCAATTTCAAGGAAAATATGTGTTACTGGTATTTTATCCACTTGACTTCACT 236 consensus_11065#4 ------------------------------------------------------------ consensus_11065#2 -------GTCCCACGGAACTAATTGCATTCAGTGAAAGAGCTGCTGAGTTTCAATCTAGA 276 consensus_11065#3 ------------------------------------------------------------ consensus_11065#1 TTTGTTTGTCCCACGGAACTAATTGCATTCAGTGAAAGAGCTGCTGAGTTTCAATCTAGA 275 consensus_11065#0 TTTGTTTGTCCCACGGAACTAATTGCATTCAGTGAAAGAGCTGCTGAGTTTCAATCTAGA 296 consensus_11065#4 ------------------------------------------------------------ consensus_11065#2 GGATGTCAAGTAATCGCATGCTCAACTGATTCAGTTTATGCTCATTTGGCATGGACAAAA 336 consensus_11065#3 ------------------------------------------------------------ consensus_11065#1 GGATGTCAAGTAATCGCATGCTCAACTGATTCAGTTTATGCTCATTTGGCATGGACAAAA 335 consensus_11065#0 GGATGTCAAGTAATCGCATGCTCAACTGATTCAGTTTATGCTCATTTGGCATGGACAAAA 356 consensus_11065#4 ------------------------------------------------------------ consensus_11065#2 TTGGATCGCAAAGCTGGTGNNNNNNNNNNNNNNNNTATACCTTTGCTGTCCGATAAAAAC 396 consensus_11065#3 -----------------------------AATGAATATACCTTTGCTGTCCGATAAAAAC 31 consensus_11065#1 TTGGATCGCAAAGCTGGTGGTTTGGGGCAAATGAATATACCTTTGCTGTCCGATAAAAAC 395 consensus_11065#0 TTGGATCGCAAAGCTGGTGGTTTGGGGCAAATGAATATACCTTTGCTGTCCGATAAAAAC 416 consensus_11065#4 ------------------------------------------------------------ consensus_11065#2 CTAAGGATATCACGAGCGTACGAGGTTCTTGACGAACAGGAAGGTCATGCATTCAGAGGT 456 consensus_11065#3 CTAAGGATATCACGAGCGTACGAGGTTCTTGACGAACAGGAAGGTCATGCATTCAGAGGT 91 consensus_11065#1 CTAAGGATATCACGAGCGTACGAGGTTCTTGACGAACAGGAAGGTCATGCATTCAGAGGT 455 consensus_11065#0 CTAAGGATATCACGAGCGTACGAGGTTCTTGACGAACAGGAAGGTCATGCATTCAGAGGT 476 consensus_11065#4 --------GTCGGGCGAGAAGTTCGTTTTAAATTTAGAGGACG--CATTGATCTCATCGT 50 ** * * * * *** * * * **** * *** ** ** consensus_11065#2 ATGTTCCTCATTGATCGCAAAGGGATTTTACGTCAAATTACCGTTAACGATCGCCCTGTA 516 consensus_11065#3 ATGTTCCTCATTGATCGCAAAGGGATTTTACGTCAAATTACCGTTAACGATCGCCCTGTA 151 consensus_11065#1 ATGTTCCTCATTGATCGCAAAGGGATTTTACGTCAAATTACCGTTAACGATCGCCCTGTA 515 consensus_11065#0 ATGTTCCTCATTGATCGCAAAGGGATTTTACGTCAAATTACCGTTAACGATCGCCCTGTA 536 consensus_11065#4 CTTAAGTTACTTGGATTCAAATTG--TTTACGTCCTTTTAAT-TAAACGAATATGTTGTT 107 * * *** **** * ******** *** * ***** *** consensus_11065#2 GGTAGATCAGTTGATGAGGCGATTCGTCTCTTGGATGCTTTTATTTTCTTTGAGAAACAT 576 consensus_11065#3 GGTAGATCAGTTGATGAGGCGATTCGTCTCTTGGATGCTTTTATTTTCTTTGAGAAACAT 211 consensus_11065#1 GGTAGATCAGTTGATGAGGCGATTCGTCTCTTGGATGCTTTTATTTTCTTTGAGAAACAT 575 consensus_11065#0 GGTAGATCAGTTGATGAGGCGATTCGTCTCTTGGATGCTTTTATTTTCTTTGAGAAACAT 596 consensus_11065#4 ACCAAATCAACC-----TGCTCCTGATTTTGAAGGTACTGCTGTTATTGGCACGGAATTA 162 * **** ** * * * * * ** * ** * * ** consensus_11065#2 GGCGAAGTTTGTCC-AGCGAACTGGAAACCAAATTCAGCAACAATAAAACCTG--ATCCT 633 consensus_11065#3 GGCGAAGTTTGTCC-AGCGAACTGGAAACCAAATTCAGCAACAATAAAACCTG--ATCCT 268 consensus_11065#1 GGCGAAGTTTGTCC-AGCGAACTGGAAACCAAATTCAGCAACAATAAAACCTG--ATCCT 632 consensus_11065#0 GGCGAAGTTTGTCC-AGCGAACTGGAAACCAAATTCAGCAACAATAAAACCTG--ATCCT 653 consensus_11065#4 CGTCCAATTAGTTTGAGTCAATTTCAAGGAAAATAAGGTGTTACTGGTATTTTTTATCCA 222 * * ** ** ** ** * ** **** * * * * * **** consensus_11065#2 GTTGCTTCTCTCTCCTACTTCTCCTCTGTGC-ACTGAGGTGTTTTGTAT----------- 681 consensus_11065#3 GTTGCTTCTCTATCATAATCGACCCCAATAG-AATTC----------------------- 304 consensus_11065#1 GTTGCTTCTCTCTCCTACTTCTCCTCTGTGC-ACTGAGGTGTTTTGTATTGATGTCATAT 691 consensus_11065#0 GTTGCTTCTCTCTCCTACTTCTCCTCTGTGC-ACTGAGGTGTTTTGTATTGATGTCATAT 712 consensus_11065#4 CTTGACTCACTTTTGT--TTGTCCCCGGGACTAATGCATTCAG----------------- 263 *** ** ** * * * ** * * * consensus_11065#2 --------------------------- consensus_11065#3 --------------------------- consensus_11065#1 TTTAGTTAACATTAATAAACAGTTTTT 718 consensus_11065#0 TTTAGTTAACATTAATAAACAGTTTT- 738 consensus_11065#4 --------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||