These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11080#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 30 consensus length = 1387 fasta sequence [ACTGGCTGGCTAGTGACTTAAAAAAGTACTTATCAGAGCATCATCCCGCTCAACCTAGTGTCCTATCTCAAAGACTTATCCATGCGGGTAAGCTTTTGAAAGATGATACGTCAATCTCAGGCATTTGTACTCAGGTCGATGGGCTTCCTACAATCCATCTAGTATACCCCAACCCAAAACTAATGGGCGATTCTAATGTCAACAACTACCGAGCTGACAACACTTTGTTTAATATTCCACCTGAGCAAATGCATAAATATCAGCAGGCGTATTATCATTATTTGCAAACTTTTTATATGGAGAATCCTCCAATAAACCAAACTGAGTGCCATACGCAGGATTACTGTTACCCTTACTATTTTGGGACAGGGACTGTTATGCAAATGCTTC-CCGGGAACTATAATTTCCCTAACAATGCTTATGTCCCACAAGCTCATAGCTCTTTACGCCAAACAACCACAAACAGTT-CAT-CTAGCAATATGCAACAG-TG-GATTCAAAGGGCGCAGGCACTTTTATCCAATTGGGGAGTGTTTAATGGTAATCAGCGTCAGAGGGAAGCGGATGAGGTATTACCTAACGAAGATGGGGTTAACCAAAGAGCTGACCAAATTCAACCCCAAGCAGCACAAGAAATGGTGCTTAATAATGCAATACGAAATAATGATAGACCCGATGAAGAGGTTAACGGGGTGGGAAATATGGACATAATTGATCGTTTTTACATGCTTTTTCGACTTTGTCTTTTCGTGGGGCTTTGTTTCGCATATTCATCTTTGGACAAGGCACTTATTGTGTTCTCAGTCGCTGCTTATGTATATCTGTACAATATCTACCGCAGATATGCTGTTGTAGAGCGTATAGTACACGCCCAACGACGACCGCAACAAAATCCCCAAGGTGCACAAAGCAATTTGAACCCTCCAGCAAGTGGACAATCGGAGAATCAGCAAAACCAGCTTGTTCAGGAATCTACAGGAGATCAAGCAAACGCTAACCTACGTGGTGAACAAGAATCGAGGTTTACAAGGATAACTACAAATCTGCGATTGGCAGCAAATCATTCTTATCAGTTCTTTTCAGCTCTGATTTCCTCAATTATTCCAGAACAACCACCACCACTACACCTAGACTAGAGTTCAATATCTTCTAA-CTTGATTATTGAACACAATATTTTATTTAATCTGTTATCCT-AGATATACTGACCCTGACACCTCACTTCTTATCCACGTTTTATTTTTAATTTAACTTAATCCGTAATTTGTCTTTTGTTTCACAAAGTGGCTTCACCTTCATGTCTGTACACACAACATTGGAAAGCAAAAACCTAGAAATTTGTTGAAGGTTCCATTCACAACCCANATTTATTTCAAAAATTTTTTGAGTACTT] [+] EMBL CD116102 [ACTGGCTGGCTAGTGACTTAAAAAAGTACTTATCAGAGCATCATCCCGCTCAACCTAGTGTCCTATCTCAAAGACTTATCCATGCGGGTAAGCTTTTGAAAGATGATACGTCAATCTCAGGCATTTGTACTCAGGTCGATGGGCTTCCTACAATCCATCTAGTATACCCCAACCCAAAACTAATG ] [-] EMBL CD111839 [ ATCAGAGCATCATTTCGCTCAACCTAGTGTCCTATCTCAAAGACTTATCCATGCGGGTAAGCTTTTGAAAGATGATACGTCAATCTCAGGCATTTGTACTCAGGTCGATGGGCTTCCTACAATCCATCTAGTATACCCCAACCCAAAACTAATGGGCGATTCTAATGTCA ] [+] EMBL CD082277 [ GCTCAACCTAGTGTCCTATCTCAAAGACTTATTCATGCGGGTAAACCTTTGAAAGATGATACGTCAATCTCAGGCATTTGTACTCAGGTCGATGGGCTTCCTACAATCCATCTAGTATACCCCAACCCAAAACTAATGGGCGATTCTAATGTCAACAACTACCGAGCTGACAACACTTTGTTTAATATTCCACCTGAGCAAATGCATAAATATCAGCAGGCGTATTATCATTATTTGCAAACTTTTTATATGGAGAATCCTCCAATAAACCAAACTGAGTGCCATACGCAGGATTACTGTTACCCTTACTATTTTGGGACAGGGACTGTTATGCAAATGCTTC CCGGGAACTATAATTTCCCTAACAATGCTTATGTCCCACAAGCTCATAGCTCTTTACGCCAAACAACCACAAACAGTT CAT CTAGCAATATGCAACAG TG GATTCAAAGGGCGCAGGCACTTTTATCCAATTGGGGAGTGTTTAATGGTAATCAGCGTCAGAGGGAAGCGGATGAAGTATTACCTAACGAAGATGGNGTTAACCAAAGAGCTGACCAAATTCAACC ] [+] EMBL CD171049 [ CCTATCTCAAAGACTTATCCATGCGGGTAAGCTTTTGAAAGATGATACGTCAATCTCAGGCATTTGTACTCAGGTCGATGGGCTTCCTACAATCCATCTAGTATACCCCAACCCAAAACTAATGGGCGATTCTAATGTCAACAACTACCGAGCTGACAACACTTTGTTTAATATTCCACCTGAGCAAATGCATAAATATCAGCAGGCGTATTATCATTATTTGCAAACTTTTTATATGGAGAATCCTCCAATAAACCAAACTGAGTGCCATACGCAGGATTACTGTTACCCTTACTATTTTGGGACAGGGACTGTTATGCAAATGCTTC CCGGGAACTATAATTTCCCTAACAATGCTTATGTCCCACAAGCTCATAGCTCTTTACGCCAAANAAACACAAACAGTT CAT CTAGCAATATGCAACAG TG GATTCAAA ] [+] EMBL CD171051 [ CCTATCTCAAAGACTTATCCATGCGGGCTAGCTTTTGAAAGATGATACGTCAATCTCAGGCATTTGTACTCAGGTCGATGGGCTTCCTACAATCCATCCAGTATACCCCAACCCAAAACTAATGGGCGATTCTAATGTCAACAACTACCGAGCTGACAACACTTTGTTTAATATTCCACCTGAGCAAATGCATAAATATCAGCAGGCGTATTATCATTATTTGCAAACTTTTTATATGGAGAATCCTCCAATAAACCAAACTGAGTGCCATACGCAGGATTACTGTTACCCTTACTATTTTGGGACAGGGACTGTTATGCAAATGCTTC CCGGGAACTATAATTTCCCTAACAATGCTTATGTCCCACAAGCTCATAGCTCTTTACGCCAAACAACCACAAACAGTT CAT CTAGCAATATGCAACAG TG GATTCAAAGGGCGCAGGCACTTTTATC ] [-] EMBL CD170847 [ TACTCAGGTCGATGGGCTTCCTACAATCCATCTAGTATACCCCAACCCAAAACTAATGGGCGATTCTAATGTCAACAACTACCGAGCTGACAACACTTTGTTTAATATTCCACCTGAGCAAATGCATAAATATCAGCAGACGTATTATCATTATTTGCAAACTTTTTATATGGAGAATCCTCCAATAAACCAAACTGAGTGCCATACGCAGGATTACTGTTACCCTTACTATTTTGGGACAGGGACTGTTATGCAAATGCTTC CCGGGAACTATAATTTCCCTAACAATGCTTATGTCCCACAAGCTCATAGCTCTTTACGCCAAACAACCACAAACAGTT CAT CTAGCAATATGCAACAG TG GATTCAAAGGGCGCAGGCACTTTT TCCAATTGGGGAGTGTTTAATGGTAATCAGCGTCAGAGGGAAGCGGATGAGGTATTACCTAACGAAGATGGGGTTAACCAAA ] [-] EMBL CD170860 [ TACAATCCATCTAGTATACCCCAACCCAAAACTAATGGGCGATTCTAATGTCAACAACTACCGAGCTGACAACACTTTGTTTAATATTCCACCTGAGCAAATGCATAAATATCAGCAGGCGTATTATCATTATTTGCAAACTTTTTATATGGAGAATCCTCCAATAAACCAAACTGAGTGCCATACGCAGGATTACTGTTACCCTTACTATTTTGGGACAGGGACTGTTATGCAAATGCTTC CCGGGAACTATAATTTCCCTAACAATGCTTATGTCCCACAAGCTCATAGCTCTTTACGCCAAACAACCACAAACAGTT CAT CTAGCAATATGCAACAG TG GATTCAAAGGGCGCAGGCACTTTTATCCAATTGGGGAGTGTTTAATGGTAATCAGCGTCAGAGGGAAGCGGATGAGGTATTACCTAACGAAGATGGGGTTAA ] [-] EMBL CD170887 [ AACAACTACCGAGCTGACAACACTTTGTTTAATATTCCACCTGAGCAAATGCATAAATATCAGCAGGCGTATTATCATTACTTGCAAACTTTTTATATGGAGAATCCTCCAATAAACCAAACTGAGTGCCATACGCAGGATTACTGTTACCCTTACTATTTTGGGACAGGGACTGTTATGCATATGCTTC CCGGGAACTATAATTTCCCTAACAATGCTTATGTCCCACAAGCTCATAGCTCTTTACGCCAAACAACCACAAACAGTT TAT CTAGCAATATGCAACAG TG GATTCAAAGGGCGCAGGCACTTTTATCCAATTGGGGAGTGTTTAATGGTAATCAGCGTCAGAGGGAAGCGGATGAGGTATTACCTAACGAAGATGGGGTTAA ] [+] EMBL AI068059 [ TTCCACCTGAGCAAATGCATAAATATCAGCAGGCGTATTATCATTATTTGCAAACTTTTTATATGGAGAATCCTCCAATAAACCAAACTGAGTGCCATACGCAGGATTACTGTTACCCTTACTATTTTGGGACAGGGACTGTTATGCAAATGCTTC CCGGGAACTATAATTTCCCTAACAATGCTTATGTCCCACAAACTCATAGCTCTTTACGCCAAACAACCACAAACAGTT CAT CTAGCAATATGCAACAG TG GATTCAAAGGGCGCAGGCACTTTTATCCAATTGGGGAGTGTTTAATGGTAATCAGCGTCAGAGGGAAGCGGATGAGGTATTACCTA ] [+] EMBL CD142221 [ TGCCATACGCAGGATTACTGTTACCCTTACTATTTTGGGACAGGGACTGTTATGCAAATGCTTC CCGGGAACTATAATTTCCCTAACAATGCTTATGTCCCACAAACTCATAGCTCTTTACGCCAAACAACCACAAACAGTT CAT CTAGCAATATGCAACAG TG GATTC ] [-] EMBL CD129034 [ GACTGTTATGCAAATGCTTC CCGGGAACTATAATTTCCCTAACAATGCTTATGTCCCGCAAGCTCATAGCTCTTTACGCCAAACAACCAC AATTGTTNNNTNNNNNNNATATGCAACAG TG GATTCAAAGGGCGCAGGCACTTTTATCCAATTGGGGAGTGTTTAATGGTAATCAGCGTCAGAGGGAAGCGGATGAGGTATTACCTAACGAAGATGGGGTTAACCAAAGAGCTGACCAAATTCAACCCCAAGCAGCACAAGAAATGGTGCTTAATAATGCAATACGAAATAATGATAGACCCGATGAAGAGGTTAACGGGGTGGGAAATATGGACATAATTGATCGTTTTTACATGCTTTTTCGACTTTGTCTTTTCGTGGGGCTTTGTTTCGCATATTCATCTTTGGACAAGGCACTTATTGTGTTCTCAGTCGCTGCTTATGTATATCTGTACAATATCTACCGCAGATATGCTGTTGTAGAGCGTATAGTACACGCCCAACGACGACCGCAACAAAATCCCCAAGGTGCACAAAGCAATTTGAACCCTCCAGC ] [+] EMBL CD198327 [ GCTTCTCCGGGAACTATAATTTCCCTAACAATGCTTATGTCCCACAAACTCATAGCTCTTTACGCCAAACAACCACAAACAGTT CAT CTAGCAATATGCTACAGATGTCATTC ] [-] EMBL CD116175 [ TTTNACATGC TTTTCGACTTTGTCTNTTCGTGGGGCTNTGTTNCGCATATTCATCTTTGGACAAGGCACTTATTGTGTTCTCAGTCGCTGCTTATGTATATCTGTACAATATCTACCGCAGATATGCTGTTGTAGAGCGTATAGTACACGCCCAACGACGACCGCAACAAAATCCCCAAGGTGCACAAAGCAATTTGAACCCTCCAGCAAGTGGACAATCGGAGAATCAGCAAAACCAGCTTGTTCAGGAATCTACAGGAGACCAAGCAAACGCTAACCTACGTGGTGAACAAGAATCGAGGTTTACAAGGATAACTACAAATCTGCGATTGGCAGCAAATCATTCTTATCAGTTCTTTTCAGCTCTGATTTCCTCAATTATTCCAGAACAACCACCACCACTACACCTAGACTAGAGTTCAATATCTTCTAA CTTGATTATTGAACACAATATTTTATTTAATCTGTTATCCT AGATATACTGACCCTGACACCTCACTTCTTATCCACGTTTTATTTTTAATTTAACTTAATCCGTAATTTGTCTTTTGTTTCACAAAGTGGC ] [+] EMBL CD081970 [ CTTATTGTGTTCTCAGTCGCTGCTTATGTATATCTGTACAATATCTACCGCAGATATGCTGTTGTAGAGCGTATAGTACACGCCCAACGACGACCGCAACAAAATCCCCAAGGTGCACAAAGCAATTTGAACCCTCCAGCAAGTGGACAATCGGAGAATCAGCAAAACCAGCTTGTTCAGGAATCTACAGGAGATCAAGCAAACGCTAACCTACGTGGTGAACAAGAATCGAGGTTTACAAGGATAACTACAAATCTGCGATTGGCAGCAAATCATTCTTATCAGTTCTTTTCAGCTCTGATTTCCTCAATTATTCCAGAACAACCACCACCACTACACCTAGACTAGAGTTCAATATCTTCTAA CTTGATTATTGAACACAATATTTTATTTAATCTGTTATCCT AGATATACTGACCCTGACACCTCACTTCTTATCCACGTTTTATTTTTAATTTAACTTAATCCGTAATTTGTCTTTTGTTTCACAAAGTGGCTTCACCTTCATGTCTGTACACACAACATTGGAAAGCAAAAACCTAGAAATTTGTTGAAGGTTCCATTCACAACCCANAT ] [+] EMBL CD143559 [ CGCTGCTTATGTATATCTGTACAATATCTACCGCAGATATGCTGTTGTAGAGCGTATAGTACACGCCCAACGACGACCGCAACAAAATCCCCAAGGTGCACAAAGCAATTTGAACCCTCCAGCAAGTGGACAATCGGAGAATCAGCAAAACCAGCTTGTTCAGGAATCTACAGGAGATCAAGCAAACGCTAACCTACGTGGTGAACAAGAATCGAGGTTTACAAGGATAACTACAAATCTGCGATTGGCAGCAAATCATTCTTATCAGTTCTTTTCAGCTCTGATTTCCTCAATTATTCCAGAACAACCACCACCACTACACCTAGACTAGAGTTCAATATCTTCTAA CTTGATTATTGAACACAATATTTTATTTAATCTGTTATCCT AGATAT ] [+] EMBL CD143467 [ CGCTGCTTATGTATATCTGTACAATATCTACCGCAGATATGCTGTTGTAGAGCGTATAGTACACGCCCAACGACGACCGCAACAAAATCCCCAAGGTGCACAAAGCAATTTGAACCCTCCAGCAAGTGGACAATCGGAGAATCAGCAAAACCAGCTTGTTCAGGAATCTACAGGAGATCAAGCAAACGCTAACCTACGTGGTGAACAAGAATCGAGGTTTACAAGGATAACTACAAATCTGCGATTGGCAGCAAATCATTCTTATCAGTTCTTTTCAGCTCTGATTTCCTCAATTATTCCAGAACAACCACCACCACTACACCTAGACTAGAGTTCAATATCTTCTAA CTTGATTATTGAACACAATATTTTATTTAATCTGTTATCCT AGATAT ] [-] EMBL CD143469 [ GCTGCTTATGTATATCTGTACAATATCTACCGCAGATATGCTGTTGTAGAGCGTATAGTACACGCCCAACGACGACCGCAACAAAATCCCCAAGGTGCACAAAGCAATTTGAACCCTCCAGCAAGTGGACAATCGGAGAATCAGCAAAACCAGCTTGTTCAGGAATCTACAGGAGATCAAGCAAACGCTAACCTACGTGGTGAACAAGAATCGAGGTTTACAAGGATAACTACAAATCTGCGATTGGCAGCAAATCATTCTTATCAGTTCTTTTCAGCTCTGATTTCCTCAATTATTCCAGAACAACCACCACCACTACACCTAGACTAGAGTTCAATATCTTCTAA CTTGATTATTGAACACAATATTTTATTTAATCTGTTATCCT AGATATA ] [-] EMBL CD143455 [ GCTGCTTATGTATATCTGTACAATATCTACCGCAGATATGCTGTTGTAGAGCGTATAGTACACGCCCAACGACGACCGCAACAAAATCCCCAAGGTGCACAAAGCAATTTGAACCCTCCAGCAAGTGGACAATCGGAGAATCAGCAAAACCAGCTTGTTCAGGAATCTACAGGAGATCAAGCAAACGCTAACCTACGTGGTGAACAAGAATCGAGGTTTACAAGGATAACTACAAATCTGCGATTGGCAGCAAATCATTCTTATCAGTTCTTTTCAGCTCTGATTTCCTCAATTATTCCAGAACAACCACCACCACTACACCTAGACTAGAGTTCAATATCTTCTAA CTTGATTATTGAACACAATATTTTATTTAATCTGTTATCCT AGATATA ] [-] EMBL CD143436 [ GCTGCTTATGTATATCTGTACAATATCTACCGCAGATATGCTGTTGTAGAGCGTATAGTACACGCCCAACGACGACCGCAACAAAATCCCCAAGGTGCACAAAGCAATTTGAACCCTCCAGCAAGTGGACAATCGGAGAATCAGCAAAACCAGCTTGTTCAGGAATCTACAGGAGATCAAGCAAACGCTAACCTACGTGGTGAACAAGAATCGAGGTTTACAAGGATAACTACAAATCTGCGATTGGCAGCAAATCATTCTTATCAGTTCTTTTCAGCTCTGATTTCCTCAATTATTCCAGAACAACCACCACCACTACACCTAGACTAGAGTTCAATATCTTCTAA CTTGATTATTGAACACAATATTTTATTTAATCTGTTATCCT AGATATA ] [-] EMBL CD143521 [ GCTGCTTATGTATATCTGTACAATATCTACCGCAGATATGCTGTTGTAGAGCGTATAGTACACGCCCACCGACGACCGCAACAAAATCCCCAAGGTGCACAAAGCAATTTGAACCCTCCAGCAAGTGGACAATCGGAGAATCAGCAAAACCAGCTTGTTCAGGAATCTACAGGAGGTCAAGCAAACGTTAACCTACGTGGTGAACAAGAATCGAGGTTTACAAGGATAACTACAAATCTGCGATTGGCAGCAAATCATTCTTATCAGTTCTTTTCAGCTCTGATTTCCTCAATTATTCCAGAACAACCACCACCACTACACCTAGACTAGAGTTCAATATCTTCTAA CTTGATTATTGAACACAATATTTTATTTAATCTGTTATCCT AGATATA ] [-] EMBL CD143563 [ GCTGCTTATGTATATCTGTACAATATCTACCGCAGATATGCTGTTGTAGAGCGTATAGTACACGCCCAACGACGACCGCAACAAAATCCCCAAGGTGCACAAAGCAATTTGAACCCTCCAGCAAGTGGACAATCGGAGAATCAGCAAAACCAGCTTGTTCAGGAATCTACAGGAGATCAAGCAAACGCTAACCTACGTGGTGAACAAGAATCGAGGTTTACAAGGATAACTACAAATCTGCGATTGGCAGCAAATCATTCTTATCAGTTCTTTTCAGCTCTGATTTCCTCAATTATTCCAGAACAACCACCACCACTACACCTAGACTAGAGTTCAATATCTTCTAA CTTGATTATTGAACACAATATTTTATTTAATCTGTTATCCT AGATATA ] [-] EMBL CD143507 [ GCTGCTTATGCATATCTGTACAATATCTACAGCAGATATGCTGTTGTAGAGCGTATAGTACACGCCCATCGACGACAGCAACAAAGTCCTCAAGGTGCACAAAGCAATTTGAACCGTCCAGCAAGTGGACAATCGGATAATCAGCAAAACCAGTTTGTTCAGGAATCTACAGGAGATCAGGCAAACGCTAACTTACGTGGTGAACAAGAATATAGGTTTACAAGGATAACTACATATCTGCGATTGGCAGCAAATCATTATTATCAGTTCTTTTCAGCTGTGATTTCCTCAATTATTCCAGAACAACCACCACCACTACACCTAGACTAGAGTTCAATATCTTCTAA CTTGATTATTGAACACAATATTTTATTTAATCTGTTATCCT AGATATA ] [+] EMBL CD134143 [ ATCCCCAAGGTGCACAAAGCAATTTGAACCCTCCAGCAAGTGGACAATCGGAGAATCAGCAAAACCAGCTTGTTCAGGAATCTACAGGAGATCAAGCAAACGCTAACCTACGTGGTGAACAAGAATCGAGGTTTACAAGGATAACTACAAATCTGCGATTGGCAGCAAATCATTCTTATCAGTTCTTTTCAGCTCTGATTTCCTCAATTATTCCAGAACAACCACCACCc ] [+] EMBL CD145231 [ GCACAAAGCAATTTGAACCCTCCAGCAAGTGGACAATCGGAGAATCAGCAAAACCAGCTTGTTCAGGAATCTACAGGAGATCAAGCAAACGCTAACCTACGTGGTGAACAAGAATCGAGGTTTACAAGGATAACTACAAATCTGCGATTGGCAGCAAATCATTCTTATCAGTTCTTTTCAGCTCTGATTTCCTCAATTATTCCAGAACAACCACCACCACTACACCTAGACTAGAGTTCAATATCTTCTAA CTTGATTATTGAACACAATATTTTATTTAATCTGTTATCCT AGATATACTGACCCTGACACCTCACTTCTTATCCACGTTTTATTTTTAATTTAACTTAATCCGTAATTTGTCTTTTGT ] [-] EMBL CD075882 [ TGGACAATCGGAGAATCAGCAAAACCAGCTTGTTCAGGAATCTACAGGAGATCAAGCAAACGCTAACCTACGTGGTGAACAAGAATCGAGGTTTACAAGGATAACTACAAATCTGCGATTGGCAGCAAATCATTCTTATCAGTTCTTTTCAGCTCTGATTTCCTCAATTATTCCAGAACAACCACCACCACTACACCTAGACTAGAGTTCAATATCTTCTAA CTTGATTATTGAACACAATATTTTATTTAATCTGTTATCCT AGATATACTGACCCTGACACCTCACTTTTTATCCACGTTTTATTTTTAATTTAACTTAATCCGTAATTTGTCTTTTGTTTCACAAAGTGGCTTCACCTTCATGTCTGTACACACAACA TGGAAAGCAAAAACCTAGAAATTTGTT AAGGTTCCATTCACAACCCAAATTTATTTCAAAAATTTTTTGAGTACTT] [+] EMBL CD194472 [ AGAATCAGCAAAACCAGCTTGTTCAGGAATCTACAGGAGATCAAGCAAACGCTAACCTACGTGGTGAACAAGAATCGAGGTTTACAAGGATAACTACAAATCTGCGATTGGCAGCAAATCATTCTTATCAGTTCTTTTCAGCTCTGATTTCCTCAATTATTCCAGAACAACCACCACCACTACACCTAGACTAGAGTTCAATATCTTCTAA CTTGATTATTGAACACAATATTTTATTTAATCTGTTATCCT AGATATACTGAC ] [+] EMBL CD135629 [ AGCAAAACCAGCTTGTTCAGGAATCTACAGGAGATCAAGCAAACGCTAACCTACGTGGTGAACAAGAATCGAGGTTTACAAGGATAACTACAAATCTGCGATTGGCAGCAAATCATTCTTATCAGTTCTTTTCAGCTCTGATTTCCTCAATTATTCCAGAACAACCACCACCACTACACCTAGACTAGAGTTCAATATCTTCTAA CTTGATTATTGAACACAATATTTTATTTAATCTGTTATCCT AGATATACTGACCCTGACACCTCACTTCTTATCCACGTTTTATTTTTAATTTAACTTAATCCGTAATTTGTCTTTTGTTTCACAAAGTGG ] [+] EMBL AI882662 [ CAGGAATCTACAGGAGATCAAGCAAACGCTAACCTACGTGGTGAACAAGAATCGAGGTTTACAAGGATAACTACAAATCTGCGATTGGCAGCAAATCATTCTTATCAGTTCTTTTCAGCTCTGATTTCCTCAATTATTCCAGAACAACCACCACCACTACACCTAGACTAGAGTTCAATATCTTCTAACCTGGATTATTGAACACAATATTTTATTTAATCTGTAATCCTGAGATATACTGACCCTGACACCTCACTTCTTATCCATGTTTTATTTTTAATTa ] [-] EMBL CD139590 [ naaaatccnCAAGGATAACTACAAATCTGCGATTGGCAGCAAATCATTCTANTCAGTTCTCTTCAGCTCTGATTTCCTCAATTATTCCAGAACAACCACCACCACTACACCTAGACTAGAGTTCAATATCTTCTAA CTTGGTTATTGAACACAATATTTTATTTAATCTGTTATCCT AGATATACTGACCCTGACACCTCACTTCTTATCCACGTTTTATTTTTAATTTAACTTAATCCGTAATTTGTCTTTTGTTTCACAAAGTGGCTTCACCTTCATGTCTGTA ] [+] EMBL CD123955 [ GTTCAATATCTTCTAA CTTGATTATTGAACACAATATTTTATTTAATCTGTTATCCT AGATATACTGACCCTGACACCTCACTTCTTATCCACGTTTTATTTTTAATTTAACTTAATCCGTATTTTGTCTTTTGCTTCACAAAGTGGCTTCACCTTCATGTCTGTACATTTTACATTGGAAAGC ] consensusID : consensus_11080#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 402 fasta sequence [TGGCGAGCCGAAACCAAAATCCCCAAGGTGCACAAAGCAATTTGAACCCTCCAGCAAGTGGACAATCGGAGAATCAGCAAAACCAGCTTGTTCAGGAATCTACAGGAGATCAAGCAAACGCTAACATACGTGGTGAACAAGAATCGAGGTTTACAAGGATAACTACAAATCTGCGATTGGCAGCAAATCATTCTTATCAGTTCTTTTCAGCTCTGATTTCCTCAATTATTCCAGAACAACCACCACCACTACACCTAGACTAGAGTTCAATATCTTCTAACTTGATTATTGAACACAATATTTTATTTAATCTGTTATCCTAGATATACTGACCCTGACACCTCACTTCTTATCCACGTTTTATTTTTAATTTAACTTAATCCGTAAAAAAAAAAAAAAAAA] [-] EMBL AI395200 [TGGCGAGCCGAAACCAAAATCCCCAAGGTGCACAAAGCAATTTGAACCCTCCAGCAAGTGGACAATCGGAGAATCAGCAAAACCAGCTTGTTCAGGAATCTACAGGAGATCAAGCAAACGCTAACATACGTGGTGAACAAGAATCGAGGTTTACAAGGATAACTACAAATCTGCGATTGGCAGCAAATCATTCTTATCAGTTCTTTTCAGCTCTGATTTCCTCAATTATTCCAGAACAACCACCACCACTACACCTAGACTAGAGTTCAATATCTTCTAACTTGATTATTGAACACAATATTTTATTTAATCTGTTATCCTAGATATACTGACCCTGACACCTCACTTCTTATCCACGTTTTATTTTTAATTTAACTTAATCCGTAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11080#0 ACTGGCTGGCTAGTGACTTAAAAAAGTACTTATCAGAGCATCATCCCGCTCAACCTAGTG 60 consensus_11080#1 ------------------------------------------------------------ consensus_11080#0 TCCTATCTCAAAGACTTATCCATGCGGGTAAGCTTTTGAAAGATGATACGTCAATCTCAG 120 consensus_11080#1 ------------------------------------------------------------ consensus_11080#0 GCATTTGTACTCAGGTCGATGGGCTTCCTACAATCCATCTAGTATACCCCAACCCAAAAC 180 consensus_11080#1 ------------------------------------------------------------ consensus_11080#0 TAATGGGCGATTCTAATGTCAACAACTACCGAGCTGACAACACTTTGTTTAATATTCCAC 240 consensus_11080#1 ------------------------------------------------------------ consensus_11080#0 CTGAGCAAATGCATAAATATCAGCAGGCGTATTATCATTATTTGCAAACTTTTTATATGG 300 consensus_11080#1 ------------------------------------------------------------ consensus_11080#0 AGAATCCTCCAATAAACCAAACTGAGTGCCATACGCAGGATTACTGTTACCCTTACTATT 360 consensus_11080#1 ------------------------------------------------------------ consensus_11080#0 TTGGGACAGGGACTGTTATGCAAATGCTTCCCGGGAACTATAATTTCCCTAACAATGCTT 420 consensus_11080#1 ------------------------------------------------------------ consensus_11080#0 ATGTCCCACAAGCTCATAGCTCTTTACGCCAAACAACCACAAACAGTTCATCTAGCAATA 480 consensus_11080#1 ------------------------------------------------------------ consensus_11080#0 TGCAACAGTGGATTCAAAGGGCGCAGGCACTTTTATCCAATTGGGGAGTGTTTAATGGTA 540 consensus_11080#1 ------------------------------------------------------------ consensus_11080#0 ATCAGCGTCAGAGGGAAGCGGATGAGGTATTACCTAACGAAGATGGGGTTAACCAAAGAG 600 consensus_11080#1 ------------------------------------------------------------ consensus_11080#0 CTGACCAAATTCAACCCCAAGCAGCACAAGAAATGGTGCTTAATAATGCAATACGAAATA 660 consensus_11080#1 ------------------------------------------------------------ consensus_11080#0 ATGATAGACCCGATGAAGAGGTTAACGGGGTGGGAAATATGGACATAATTGATCGTTTTT 720 consensus_11080#1 ------------------------------------------------------------ consensus_11080#0 ACATGCTTTTTCGACTTTGTCTTTTCGTGGGGCTTTGTTTCGCATATTCATCTTTGGACA 780 consensus_11080#1 ------------------------------------------------------------ consensus_11080#0 AGGCACTTATTGTGTTCTCAGTCGCTGCTTATGTATATCTGTACAATATCTACCGCAGAT 840 consensus_11080#1 ------------------------------------------------------------ consensus_11080#0 ATGCTGTTGTAGAGCGTATAGTACACGCCCAACGACGA-CCGCAAC-AAAATCCCCAAGG 898 consensus_11080#1 --------------------------------TGGCGAGCCGAAACCAAAATCCCCAAGG 28 * *** *** *** ************* consensus_11080#0 TGCACAAAGCAATTTGAACCCTCCAGCAAGTGGACAATCGGAGAATCAGCAAAACCAGCT 958 consensus_11080#1 TGCACAAAGCAATTTGAACCCTCCAGCAAGTGGACAATCGGAGAATCAGCAAAACCAGCT 88 ************************************************************ consensus_11080#0 TGTTCAGGAATCTACAGGAGATCAAGCAAACGCTAACCTACGTGGTGAACAAGAATCGAG 1018 consensus_11080#1 TGTTCAGGAATCTACAGGAGATCAAGCAAACGCTAACATACGTGGTGAACAAGAATCGAG 148 ************************************* ********************** consensus_11080#0 GTTTACAAGGATAACTACAAATCTGCGATTGGCAGCAAATCATTCTTATCAGTTCTTTTC 1078 consensus_11080#1 GTTTACAAGGATAACTACAAATCTGCGATTGGCAGCAAATCATTCTTATCAGTTCTTTTC 208 ************************************************************ consensus_11080#0 AGCTCTGATTTCCTCAATTATTCCAGAACAACCACCACCACTACACCTAGACTAGAGTTC 1138 consensus_11080#1 AGCTCTGATTTCCTCAATTATTCCAGAACAACCACCACCACTACACCTAGACTAGAGTTC 268 ************************************************************ consensus_11080#0 AATATCTTCTAACTTGATTATTGAACACAATATTTTATTTAATCTGTTATCCTAGATATA 1198 consensus_11080#1 AATATCTTCTAACTTGATTATTGAACACAATATTTTATTTAATCTGTTATCCTAGATATA 328 ************************************************************ consensus_11080#0 CTGACCCTGACACCTCACTTCTTATCCACGTTTTATTTTTAATTTAACTTAATCCGTAAT 1258 consensus_11080#1 CTGACCCTGACACCTCACTTCTTATCCACGTTTTATTTTTAATTTAACTTAATCCGTAAA 388 *********************************************************** consensus_11080#0 TTGTCTTTTGTTTCACAAAGTGGCTTCACCTTCATGTCTGTACACACAACATTGGAAAGC 1318 consensus_11080#1 AAA------AAAAAAAAAAA---------------------------------------- 402 * *** consensus_11080#0 AAAAACCTAGAAATTTGTTGAAGGTTCCATTCACAACCCANATTTATTTCAAAAATTTTT 1378 consensus_11080#1 ------------------------------------------------------------ consensus_11080#0 TGAGTACTT 1387 consensus_11080#1 --------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||