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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11082#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 740 fasta sequence
[CAAACACAAACACAAAAGTCAGACATACAAGTGAC-GGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACATAACAACAACAACAACAACAACAACACCA--A-CACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCAC-ACAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCC-ACAAAAACTATACTCCCGTCTAGTCAGTACACT-CCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAA-ACACAAAAGTCAG-ACAT-CCAAGTG-ACGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACATAACAACAACAACAACAACAACAACAACACCACCACCGAAATACACTGCGAAAATCAACATGTCAAACAATCAAACCATCTGCAAAC]
[-] EMBL CD113329 [CAAACACAAACACAAAAGTCAGACATACAAGTGAC GGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACCATTCAACATTCACATAACAACAACAACAACAACAACAACACCA C CACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCAC ACAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCACCGCC ACAAAAACTATACTCCCGTCTAGTCAGTACACT CCAATTCAAAAATACACTCGCTCGCTCACATCTCTTGATACAATTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAACAAATTAAACACAAAAGCAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAA ACACAAAAGTCAG ]
[+] EMBL CD196791 [ CATCCAAGTGACTGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACATAACAACAACAACAACAACAACAACACCACCACCACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCAC ATAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCACCGGCACgcgtcaatg ]
[+] EMBL CD196756 [ CAAGTGAC GGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACATAACAACAACAACAACAACAACAACACCACCACCACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCAC ATAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCACCGGCACCGTCAACGCA ATAAAAACT ]
[+] EMBL CD196417 [ CAAGTGAC GGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACATAACAACAACAACAACAACAACAACAACA A CACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCAC ACAAACACCCGTCAACTCACCTGAAACTCATCAGCCAACCACTCTTGTCACCGGCAGCGtcaat ]
[+] EMBL CD085938 [ aca GGAGGACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACAT AACAACAACAACAACAACACCA A CACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATTACATCGCAACGCCTATCGACACACATCAC ACAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCC ACAAAAACTATACTCCCGTCTAGTCAGTACACT CCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTTCACTCTCTCCATCGCCGAACCAACACCACCGTGTTCGCTCCTACAAAATGAACGAATCATACACAGAAACAACATATCACTAACTCGTCACAATAGACACACACGCTCGAACACAACNCA AAAAGTCAG ACAT CCAAGTG ACGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCCCATAACAACAACCACAACAACAACACCAACACC ]
[+] EMBL CD119234 [ GAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACATAACAACAACAACAACAACAACAACACCA A CACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCAC ACAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCC ACAAAAACTATACTCCCGTCTAGTCAGTACACT CCAACTCAAAAATACACTCGCTCACTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAAAACCACCGTCTTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACA ]
[+] EMBL CD085921 [ TTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACAT AACAACAACAACAACAACACCA A CACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATTACATCGCAACGCCTATCGACACACATCAC ACAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCC ACAAAAACTATACTCCCGTCTAGTCAGTACACT CCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCTAACCAACACCACCGTCTTCGCTCCTACATAATAAACGAATTACACACGAAAACAACGTATCACTAGCTCGTCTCATTAAACACACACGCTCAAACTGCC GCACCAAAGTCAGTACATCCCAAGTGTACGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCCTGAAACTAATATC ]
[-] EMBL CD140382 [ AATATCAACTATTCAACATTCACATTACCACAACAACAACACCAACAACAACA A CACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCAC ACAAACACCCGTCAACTCACCTGAAACTCATC ]
[-] EMBL CD140384 [ TATTCAAAATTCACATTACAACAACAACAACACCAACAACTACA A CACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCAC ACAAACACCCGTCAACTCACCTGAAACTCATC ]
[-] EMBL CD179582 [ gCAACAACACCA C CACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCAC ACAAACACCTGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCC ACAAAAACTATACTCCCGTCTAGTCAGTACACT CCAATTCAAAAATACACTCGCTCACTCACATCTCTCGAAACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAA ACACAAAAGTCAG ]
[-] EMBL AI740237 [ TCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCACAAAAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCGACAAAAACTATACTCCCGTCTAGTCAGTACAATACAAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAA ACACAAAAGTCAG ACAT CCAAGTG ACGGAGAACA ]
[+] EMBL CD186762 [ ACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCAC ACAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCC ACAAAAACTATACTCCCGTCTAGTCAGTACACT CCAATTCAAAAATACACTCGCTCACTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAA ACACAAA ]
[-] EMBL CD123600 [ CAAACCATCTGCAAACACATCTACACAACTCAAATCGAATCACATCGCAACGCCTGTCGACACACATCAC ACAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCC ACAAAAACTATACTCCCGTCTAGTCAGTACACT CCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACGCAA ACACAAAAGTCAG ACAT ACAAGTG ACGGAGAACAACATCAATTCTCGAGGCAaagagagg ]
[-] EMBL CD115752 [ gACACGACTCAAATCAAATCACATCGCAACGCCGAGCGACACACATCAC ACAAACACCCGGCAACTCACCTGAAACTCATCAACCAACCACTCAAGTCGCCGCCACCGCCGCCGCC ACAAAAACTATACTCCCGTCTAGTCAGTACACT CCAATTCAAAAATACACTCGCTCACTCACATCTCTCGAGACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAA ACACAAAAGTCAG ACAT CCAAGTG ACGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGC ]
[+] EMBL CD136092 [ C ACAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCC ACAAAAACTATACTCCCGTCTAGTCAGTACACT CCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAA ACACAAAAGTCAG ACAT CCAAGTG ACGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAA ]
[-] EMBL CD136067 [ ACAGACACCCGTCAACTCACCTGAGACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCC ACAAAAACTATACTCCCGTCTAGTCAGTACACT CCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAACATATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAA ACACAAAAGTCAG ACAT CCAAGTG ACGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAAC ]
[+] EMBL CD129748 [ ACACCTCTTCACAGTCCACTCTCTCCGTCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAA ACACAAAAGTCAG ACAT CCAAGTG ACGGAGAACAACATCAATCCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACATAACAACAACAACAACAACAACAACAACAACACCACCGAAATACACTGCGAAAATCAACATGTCAAACAATCAAACCATCTGCAAAC]
[+] EMBL CD086565 [ tgCACTGACTCGTCACAATAAACACACACGCACAAACACAA ACACAAAAGTCAG ACAT CCAAGTG ACGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACATAACAACAACAACAACAACAACAACAACACCACCACCAAAATACACTGGGAAAATCAA ]
consensusID : consensus_11082#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 574 fasta sequence
[GAGAATTGATGTTGTTCTCCGTCACTTGGATGTCTGACTTTTGTGTTCGTGTTTGTGCGTGTGTGTTTATGTATGTAAATGCTAACTGATAAACAGGTCTGTTGGTCAAAATCGCATAAACATATGTTATACAGTTTGCTTCACTTTATTATTACTGCTCTCTATTATTGCTGCTTTAATTCAAATGTATCATGTCCCTTGTAGTCGCGTTCTTGGTTTACGCGATATCTTTTCCTCTAAAACATGTGTTTCGACACAACTTTTCTCACACTTGAACTTACTTGCACCGATAGATCCTCATATAAAATAACTTTGTTCTGTGTGTGTAGGTGTGAAGAATGGGCTATGTGACGACGGATGCTTTATTTACTGAAAACGATGCTTTTATTAAACTGAATAGTCCTACTGCTTGGTTTTTATTAAATGTCTTCTAATGTGTTTAATCTTTTTTGGCTATTATGTTTTACTCTTTTTCTTCTATCTCTCTCATACTCTTAATATTTCGCGTACTACTTATGGAGTGTGTTCATATTTTTGGACTTGCACCCATCTCCTCCCTCTCTTCGCTCATTCT]
[+] EMBL CD196615 [GAGAATTGATGTTGTTCTCCGTCACTTGGATGTCTGACTTTTGTGTTCGTGTTTGTGCGTGTGTGTTTATGTATGTAAATGCTAACTGATAAACAGGTCTGTTGGTCAAAATCGCATAAACATATGTTATACAGTTTGCTTCACTTTATTATTACTGCTCTCTATTATTGCTGCTTTAATTCAAATGTATCATGTCCCTTGTAGTCGCGTTCTTGGTTTACGCGATATCTTTTCCTCTAAAACATGTGTTTCGACACAACTTTTCTCACACTTGAACTTACTTGCACCGATAGATCCTCATATAAAATAACTTTGTTCTGTGTGTGTAGGTGTGAAGAATGGGCTATGTGACGACGGATGCTTTATTTACTGAAAACGATGCTTTTATTAAACTGAATAGTCCTACTGCTTGGTTTTTATTACATGTCTTCTAATGTGTTTAATCTTTTTTGGCTATTATG ]
[+] EMBL CD062674 [ ATCCTCATATAAAATAACTTTGTTCTGTGTGTGTACGTGTGAAGAATGGTCTATGTGACGACGGATGCTTTATTTACTGAAGACGATGCTTTTATTAAACTGAATAGTCCTACTGCTTGGTTTTTATTAAATGTCTTCTAATGTGTTTAATCTTTTTTGGCTATTATGTTTTACTCTTTTTCTTCTATCTCTCTCATACTCTTAATATTTCGCGTACTACTTATGGAGTGTGTTCATATTTTTGGACTTGCACCCATCTCCTCCCTCTCTTCGCTCATTCT]
[+] EMBL CD061971 [ gtactagcGTGTGGGTGTGAAGAATGGGCTATGTGACGACGGATGCTTTATTTACTGAAAACGATGCTTTTATTAAACTGAATAGTCCTAC GCTTGGTTTTTATTAAATGTCTTCTAATGTGTTTAATCTTTTTTGGCTATTATGTTTTACTCTTTTTCTTCTATCTCTCTCATACTCTTAATATTTCGCGTACTACTTATGGAGTGTGTTCATATTTTTGGACTTGCACCCATCTCCTCCCTCTCTTCGCTCATTCT]
[+] EMBL CD195222 [ GACGACGGATGCTTTATTTACTGAAAACGATGCTTTTATTAAACTGAATAGTCCTACTGCTTGGTTTTTATTAAATGTCTTCTAATGTGTTTAATCTTTTTTGGCTATTATGTTTTACTCTTTTTCTTCTATCTCTCTCATACTCTTAATATTTCGCGTACTACTTATGGAGTGTGTTC ]
[+] EMBL CD195115 [ GACGACGGATGCTTTATTTACTGAAAACGATGCTTTTATTAAACTGAATAGTCCTACTGCTTGGTTTTTATTAAATGTCTTCTAATGTGTTTAATCTTTTTTGGCTATTATGTTTTACTCTTTTTCTTCTA ]
consensusID : consensus_11082#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 519 fasta sequence
[ATCCGTTTTATTACTCTGACCAAAAGGGAATAAACAATACTTTTAAGAGCATCAGTAAAGATCCCTATGTACTTCTGAAACACTAAATATTACTGGCCAGGCTGTTATTCATTACAGAAAAACTGAGCTACTATACAACTCGTACACTGGTATAAAAAACATCACAGCACAGTATGACTGGCAGTACACAGACATTTTTAATAGGCTAGAATAAGCTAAAATAAAGATGATTTTCAATCAAAATGTTTTTAGAGAAAAGCAATCACAACAAAATTATTATTAGGGGGGGGAAAATAATGACAACTAGAATAGTTAAAGAAATTAAAAAAGTTGACAATAACAATGTATCACTTAGTGGAATTGAGATTCAAAATCAAGTATGGGATTCTGATAAACATTATAGGGAAGTCAAGTGTTATAGAATACAATTAAATAGATGTAATGTAAAACAAACAACTGCAATAAATGCCAATTAATATATATATATATATATGGATATATATATATATATATATGGAG]
[+] EMBL CD075687 [ATCCGTTTTATTACTCTGACCAAAAGGGAATAAACAATACTTTTAAGAGCATCAGTAAAGATCCCTATGTACTTCTGAAACACTAAATATTACTGGCCAGGCTGTTATTCATTACAGAAAAACTGAGCTACTATACAACTCGTACACTGGTATAAAAAACATCACAGCACAGTATGACTGGCAGTACACAGACATTTTTAATAGGCTAGAATAAGCTAAAATAAAGATGATTTTCAATCAAAATGTTTTTAGAGAAAAGCAATCACAACAAAATTATTATTAGGGGGGGGAAAATAATGACAACTAGAATAGTTAAAGAAATTAAAAAAGTTGACAATAACAATGTATCACTTAGTGGAATTGAGATTCAAAATCAAGTATGGGATTCTGATAAACATTATAGGGAAGTCAAGTGTTATAGAATACAATTAAATAGATGTAATGTAAAACAAACAACTGCAATAAATGCCAATTAATATATATATATATATATGGATATATATATATATATATATGGAG]
consensusID : consensus_11082#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 440 fasta sequence
[GTGACGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACATAACAACAACGACAACAACAACACCACCACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCACACAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAAACACAAAAGTCAG]
[+] EMBL CD123456 [GTGACGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACATAACAACAACGACAACAACAACACCACCACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCACACAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAAACACAAAAGTCA ]
[+] EMBL CD123440 [GTGACGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACATAACAACAACGACAACAACAACACCACCACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCACACAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAAACACAAAAGTCA ]
[-] EMBL CD123397 [ agcAACGGCAGCAGCAACATCAACACCACCACCAAAATACACTGCGAAAATCAACAATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCACACAAACACCCGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAAACACAAAAGTCAG]
[-] EMBL CD179650 [ AACACATCTACACAACTCAAATCAAATCACATCGCAACGCCTATCGACACACATCACACAAACACCTGTCAACTCACCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCACAAACGCAA ACACAAAagtcag ]
consensusID : consensus_11082#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 372 fasta sequence
[TCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCTGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAAACACAAAAGTCAGACATCCAAGTGACGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAAT]
[+] EMBL CD119871 [TCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCTGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAAACACAAAAGTCAGACATCCAAGTGACGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGCGAATGTATGGACAAT]
[-] EMBL CD192964 [ CAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCACTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAACAAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACACAAACACAAAAGTCAGACATACAAGTGACGGAGAACAACATCAATTCTCGAGTCAGTGGAAACCGC ]
consensusID : consensus_11082#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 161 fasta sequence
[GACGACGGATGCTTTATTTACTGAAAACGATGCTTTTATTAAACTGAATAGTCCTACTGCTTGGTTTTTATTAAATGTCTTCTAATGTGTTTAATCTTTTTTGGCTATTATGTTTTACTCTGGGTCTTCTATCTCTCTCATACTCTGCATACCACACACCC]
[+] EMBL CD195175 [GACGACGGATGCTTTATTTACTGAAAACGATGCTTTTATTAAACTGAATAGTCCTACTGCTTGGTTTTTATTAAATGTCTTCTAATGTGTTTAATCTTTTTTGGCTATTATGTTTTACTCTGGGTCTTCTATCTCTCTCATACTCTGCATACCACACACCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11082#0 CAAACACAAACACAAAAGTCAGACATACAAGTGACGGAGAACAACATCAATTCTCGAGTC 60
consensus_11082#3 ------------------------------GTGACGGAGAACAACATCAATTCTCGAGTC 30
consensus_11082#4 ------------------------------------------------------------
consensus_11082#1 ---------------------------------------------GAGAATTGATGTTGT 15
consensus_11082#5 ------------------------------------------------------------
consensus_11082#2 -------------------------------------------------ATCCGTTTTAT 11
consensus_11082#0 AGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATT 120
consensus_11082#3 AGTGGAAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATT 90
consensus_11082#4 ------------------------------------------------------------
consensus_11082#1 TCTCCGTCACTTGGATGTCTGACTTTTGTGTTCGTGTTTGTGCGTGTGTGTTTATGTATG 75
consensus_11082#5 ------------------------------------------------------------
consensus_11082#2 TACTCTGACCAAAAGGGAATAAACAATACTTTTAAGAGCATCAGTAAAGATCCCTATGTA 71
consensus_11082#0 CACATAACAACAACAACAACAACAACAACACCAACACCAAAATACACTGCGAAAATCAAC 180
consensus_11082#3 CACATAACAACAACGACAACAACAAC---ACCACCACCAAAATACACTGCGAAAATCAAC 147
consensus_11082#4 ------------------------------------------------------------
consensus_11082#1 TAAATGCTAACTGATAAACAGGTCTGTTGGTCAAAATCGCATAAACATATGTTATACAGT 135
consensus_11082#5 ------------------------------------------------------------
consensus_11082#2 CTTCTGAAACACTAAATATTACTGGCCAGGCTGTTATTCATTACAGAAAAACTGAGCTAC 131
consensus_11082#0 AATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCA 240
consensus_11082#3 AATCAAACAATCAAACCATCTGCAAACACATCTACACAACTCAAATCAAATCACATCGCA 207
consensus_11082#4 ------------------------------------------------------------
consensus_11082#1 TTGCTTCACTTTATTATTACTGCTCTC-TATTATTGCTGCTTTAATTCAAATGTATCATG 194
consensus_11082#5 ------------------------------------------------------------
consensus_11082#2 TATACAACTCGTACACTGGTATAAAAAACATCACAGCACAGTATGACTGGCAGTACACAG 191
consensus_11082#0 ACGCCTATCGACA--CACATCACACAAACACC--CGTC-AACTCACCTGAAACTCATCAA 295
consensus_11082#3 ACGCCTATCGACA--CACATCACACAAACACC--CGTC-AACTCACCTGAAACTCATCAA 262
consensus_11082#4 -----TCTCTCCA--T-CGCCAAACCAACACCACCGTC-TTCGCTCCTGAAACTCATCAA 51
consensus_11082#1 TCCCTTGTAGTCG--CGTTCTTGGTTTACGCGA-TATC-TTTTCCTCTAAAACATGTGTT 250
consensus_11082#5 ------------------------------------------------------------
consensus_11082#2 ACATTTTTAATAGGCTAGAATAAGCTAAAATAAAGATGATTTTCAATCAAAATGTTTTTA 251
consensus_11082#0 CCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAG 355
consensus_11082#3 CCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAG 322
consensus_11082#4 CCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCTG 111
consensus_11082#1 TCGACACAACTTTTCTCACACTTGAACTTACTTGCACCGATAGATCCTCATATAAAATAA 310
consensus_11082#5 ------------------------------------------------------------
consensus_11082#2 GAGAAAAGCAATCACAACAAAATTATTATTAGGGGGGGGAAAATAATGACAACTAGAATA 311
consensus_11082#0 TACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTT 415
consensus_11082#3 TACACTCCAATTCAAAAATACACTCGCTC------------------------------- 351
consensus_11082#4 TACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTT 171
consensus_11082#1 CTTTGTTCTGTGTGTGTAGGTGTGAAGAATGGGCTATGTGACGACGGATGCTTTATTTAC 370
consensus_11082#5 ---------------------------------------GACGACGGATGCTTTATTTAC 21
consensus_11082#2 GTTAAAGAAATTAAAAAAGTTGACAATAACAATGTATCACTTAGTGGAATTGAGATT--- 368
consensus_11082#0 CACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAAC 475
consensus_11082#3 -----------------------------------------------CTACAAAATAAAC 364
consensus_11082#4 CACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTACAAAATAAAC 231
consensus_11082#1 TGAAAACGATGCTTTTATTAAACTGAATAGTCCTACTG-CTTGGTTTTTATTAAATGTCT 429
consensus_11082#5 TGAAAACGATGCTTTTATTAAACTGAATAGTCCTACTG-CTTGGTTTTTATTAAATGTCT 80
consensus_11082#2 CAAAATCAAGTATGGGATTCTGATAAACATTATAGGGAAGTCAAGTGTTATAGAATACAA 428
** ***
consensus_11082#0 AAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACA 535
consensus_11082#3 AAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACA 424
consensus_11082#4 AAATTAAACACAAAAACAACATATCACTAACTCGTCACAATAAACACACACGCACAAACA 291
consensus_11082#1 T--CTAATGTGTTTAATCTTTTTTGGCTATTATGTTTTACTCTTTTTCTTCTATCTCTCT 487
consensus_11082#5 T--CTAATGTGTTTAATCTTTTTTGGCTATTATGTTTTACTCTGGGTCTTCTATCTCTCT 138
consensus_11082#2 T---TAAATAGAT--GTAATGTAAAACAAACA-ACTGCAATAAATGCCAATTAATATATA 482
*** * * * * *
consensus_11082#0 CAAACACAAAA-GTCAGACATCCAAGTGACGGAGAACAACATCAATTCTCGAGTCAGTGG 594
consensus_11082#3 CAAACACAAAA-GTCAG------------------------------------------- 440
consensus_11082#4 CAAACACAAAA-GTCAGACATCCAAGTGACGGAGAACAACATCAATTCTCGAGTCAGTGG 350
consensus_11082#1 CATACTCTTAATATTTCGCGTACTACTTATGGAGTGTGTTCATATTTTTGGACTTGCACC 547
consensus_11082#5 CATACTCTGCATACCACACACCC------------------------------------- 161
consensus_11082#2 TATATATATATGGATATATATATATATATATATGGAG----------------------- 519
* *
consensus_11082#0 AAACCGCGAATGTATGGACAATTCATCATGAAACTAATATCAACTATTCAACATTCACAT 654
consensus_11082#3 ------------------------------------------------------------
consensus_11082#4 AAACCGCGAATGTATGGACAAT-------------------------------------- 372
consensus_11082#1 CATCTCCTCCCTCTCTTCGCTCATTCT--------------------------------- 574
consensus_11082#5 ------------------------------------------------------------
consensus_11082#2 ------------------------------------------------------------
consensus_11082#0 AACAACAACAACAACAACAACAACAACACCACCACCGAAATACACTGCGAAAATCAACAT 714
consensus_11082#3 ------------------------------------------------------------
consensus_11082#4 ------------------------------------------------------------
consensus_11082#1 ------------------------------------------------------------
consensus_11082#5 ------------------------------------------------------------
consensus_11082#2 ------------------------------------------------------------
consensus_11082#0 GTCAAACAATCAAACCATCTGCAAAC 740
consensus_11082#3 --------------------------
consensus_11082#4 --------------------------
consensus_11082#1 --------------------------
consensus_11082#5 --------------------------
consensus_11082#2 --------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||