These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11084#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 23 consensus length = 916 fasta sequence [TTATTTTTTTTTTTTTTTTTTTTTTTAGAACTAATAGGCGTTTTATTAAACATGTTGCAAAAGAAAAACATTGAGAATAGAATATAACAGATATAATTAAAGCATTCAATTAAAAAAGGCTAGCAACCGTATTAAAAAGATCGCTAACCATTGGCCAAGGAAAAAAGACAACAAATGTGAAGTACACAAAGTTAGTTGAAACAGATAACTTGAATGGTACAAAAGAGTTTTCCTAATAGATATTTTACTTTCGTAAAGAAAACAATCCTAAGTATGAGTATTTATCCTGGTAGTAGAATAACTACAATACTTCAAATGATGGATAAAATACAATGAAACCATGTA-CCCTGACAGG-GAAAAACAAAGATTATAGTCCATAAGGAGTAAACATGTTTGAATATTTACTCTATGAGGTGACCATTGCACTTGAGGTGATGCCAGAAGAAGCTTGACGAGAAGACAAACTTGTCCCGGAGATAGCAGCTCCACCTTGTCCTGGAGAATTCGTGAGCACACCTTTTCTCTTTAGT-AAAGCAGGATGAATGCATGGTAGAACT-CCACCGTGGCTAATATGTACGTGCTTTAACAATTCGTTTAACTCGGCATC-ATTTCGAACT-CCTAACATTATATGTCTTGGCGTAATAGTTTTCCTTTTGTTCGCTTTTGCAGCATTCCCTGACAATTCATTTACTTCAGCCACTAAGTATTCAATAACAGCAGACATGTACACTGATGCAGCGATGGACGTTCGACGAGCATACCGACCTTTTTTCATATAACGGTG-AACTCTGCTAACAGAAATCACTAAGCCAGCTCTATTGGATTTTGTGTGTTTCTTGCCACCAGCTGCCTTTCTTGCCTTACCTCTTCCTGACATAATTTCCAATCC-GGGTTGACCTCANAAAACAGCCGCCCC] [+] EMBL AI395077 [TTATTTTTTTTTTTTTTTTTTTTTTTAGAACTAATAGGCGTTTTATTAAACATGTTGCAAAAGAAAAACATTGAGAATAGAATATAACAGATATAATTAAAGCATTCAATTAAAAAAGGCTAGCAACCGTATTAAAAAGATCGCTAACCATTGGCCAAGGAAAAAAGACAACAAATGTGAAGTACACAAAGTTAGTTGAAACAGATAACTTGAATGGTACAAAAGAGTTTTCCTAATAGATATTTTACTTTCGTAAAGAAAACAATCCTAAGTATGAGTATTTATCCTGGTAGTAGAATAACTACAATACTTCAAATGATGGGTAAAATACAATGAAACCAAGTT GCCTGGTAGG G ] [-] EMBL AI977732 [ ATATAACAGATATAATTAAAGCATTCAATTAAAAAAGGCTAGCAACCGTATTAAAAAGATCGCTAACCATTGACCAAGGAAAAAAGACAACAAATGTAAAGTACACAAAGTTAGTTGAAACAGATAACTTGAATGGTACAAAAGAGTTTTCTTAATAGATATTTTACTTTCGTAAAGAAAACAATCCTAAGTATGAGTATTTATCCTGGTAGTAGAATAACTACAATACTTCAAATGATGGATAAAATACAATGAAACCATGTA CCCTGACAGG GAAAAACAAAGATTATAGTCCATAAGGAGTAAACATGTTTGAATATTTACTCTATGAGGTGACCATTGCACTTG ] [+] EMBL CD133065 [ gTCCTGGTAGTAGAATAACTACAATACTTCAAATGACGGATAAAATACAATGAAACCATGTANCCCTGACAGGNGAAAAACAAAGATTATAGTCCATAAGGAGTAAACATGTTTGAATA TTACTCTATGAGGTGACCATTGCACTTGAGGTGATGCCAGAAGAAGCTTGACGAGAAGACAAACTTGTCCCGGAGATAGCAGCTCCACCTTGTCCTGGAGAATTCGTGAGCACACCTTTTCTCTTTAGT AAAGCAGGATGAATGCATGGTAGAACT CCACCGTGGCTAATATGTACGTGCTTTAACAATTCGTTTAACTCGGCATCAATTGCGAACT CCTAACATTATATGT ] [+] EMBL CD132691 [ AACTACAATACTTCAAATGATGGATAAAATACAATGAAACCATGTA CCCTGACAGG GAAAAACAAAGATTATAGTCCATAAGGAGTAAACATGTTTGAATATTTACTCTATGAGGTGACCATTGCACTTGAGGTGATGCCAGAAGAAGCTTGACGAGAAGACAAACTTGTCCCGGAGATAGCAGCTCCACCTTGTCCTGGAGAATTCGTGAGCACACCTTTTCTCTTTAGT AAAGCAGGATGAATGCATGGTAGAACT CCACCGTGGCTAATATGTACGTGCTTTAACAATTCGTTTAACTCGGCATC ATTTCGAACT CCTAACATTATATGTCTTGGCGTAATAGTTTTCCTTTTGTTCGCTTTTGCAGCATTCCCTGACAATTCATTTACTTCAGCCACTAAGTATTCAATAACAGCAGACATGTACACTGATGCAGCGATGGACGTTCGACGAGCATACCG ] [+] EMBL CD132867 [ AACTACAATACTTCAAATGATGGATAAAATACAATGAAACCATGTA CCCTGACAGG GAAAAACAAAGATTATAGTCCATAAGGAGTAAACATGTTTGAATATTTACTCTATGAGGTGACCATTGCACTTGAGGTGATGCCAGAAGAAGCTTGACGAGAAGACAAACTTGTCCCGGAGATAGCAGCTCCACCTTGTCCTGGAGAATTCGTGAGCACACCTTTTCTCTTTAGT AAAGCAGGATGAATGCATGGTAGAACT CCACCGTGGCTAATATGTACGTGCTTTAACAATTCGTTTAACTCGGCATC ATTTCGAACT CCTAACATTATATGTCTTGGCGTAATAGTTTTCCTTTTGTTCGCTTTTGCAGCATTCCCTGACAATTCATTTACTTCAGCCACTAAGTATTCAATAACAGCAGACATGTACACTGATGCAGCGATGGACGTTCGACGAGCATACCG ] [+] EMBL CD133224 [ AACTACAATACTTCAAATGATGGATAAAATACAATGAAACCATGTA CCCTGACAGG GAAAAACAAAGATTATAGTCCATAAGGAGTAAACATGTTTGAATATTTACTCTATGAGGTGACCATTGCACTTGAGGTGATGCCAGAAGAAGCTTGACGAGAAGACAAACTTGTCCCGGAGATAGCAGCTCCACCTTGTCCTGGAGAATTCGTGAGCACACCTTTTCTCTTTAGT AAAGCAGGATGAATGCATGGTAGAACT CCACCGTGGCTAATATGTACGTGCTTTAACAATTCGTTTAACTCGGCATC ATTTCGAACT CCTAACATTATATGTCTTGGCGTAATAGTTTTCCTTTTGTTCGCTTTTGCAGCATTCCCTGACAATTCATTTACTTCAGCCACTAAGTATTCAATAACAGCAGACATGTACACTGATGCAGCGATGGACGTTCGACGA ] [+] EMBL CD130014 [ AACTACAATACTTCAAATGATGGATAAAATACAGTGAAACCATGTA CCCTGACAGG GAAAAACAAAGATTATAGTCCATAAGGAGTAAACATGTTTGAATATTTACTCTATGAGGTGACCATTGCACTTGAGGTGATGCCAGAAGAAGCTTGACGAGAAGACAAACTTGTCCCGGAGATAGCAGCTCCACCTTGTCCTGGAGAATTCGTGAGCACACCTTTTCTCTTTAGT AAAGCAGGATGAATGCATGGTAGAACT CCACCGTGGCTAATATGTACGTGCTTTAAC ATTCGTTTAACTCGGCATC ATTTCGAACT CCTAACATTATATGTCTTGGCGTAATAGTTTTCCTT ] [+] EMBL CD132698 [ AACTACAATACTTCAAATGATGGATAAAATACAATGAAACCATGTA CCCTGACAGG GAAAAACAAAGATTATAGTCCATAAGGAGTAAACATGTTTGAATATTTACTCTATGAGGTGACCATTGCACTTGAGGTGATGCCAGAAGAAGCTTGACGAGAAGACAAACTTGTCCCGGAGATAGCAGCTCCACCTTGTCCTGGAGAATTCGTGAGCACACCTTTTCTCTTTAGT AAAGCAGGATGAATGCATGGTAGAACT CCACCGTGGCTAATATGTACGTGCTTTAACAATTCGTTTAACTCGGCATC ATTTCGAACT CCTAACATTATATGTCTTGGCGTAATAGTTTTCCTTTTGTTCGCTTTTGCAGCATTCCCTGACAATT ] [+] EMBL CD133011 [ AACTACAATACTTCAAATGATGGATAAAATACAATGAAACCATGTA CCCTGACAGG GAAAAACAAAGATTATAGTCCATAAGGAGTAAACATGTTTGAATATTTACTCTATGAGGTGACCATTGCACTTGAGGTGATGCCAGAAGAAGCTTGACGAGAAGACAAACTTGTCCCGGAGATAGCAGCTCCACCTTGTCCTGGAGAATTCGTGAGCACACCTTTTCTCTTTAGT AAAGCAGGATGAATGCATGGTAGAACT CCACCGTGGCTAATATGTACGTGCTTTAACAATTCGTTTAACTCGGCATC ATTTCGAACT CCTAACATTATATGTCTTGGCGTAATAGTTTTCCTTTTGTTCGCTTTTGCAGCATTCCCTGACAATTCATTTACTTCAGCCACTAAGTATTCAATAACAGC ] [+] EMBL CD132907 [ AACTACAATACTTCAAATGATGGATAAAATACAATGAAACCATGTA CCCTGACAGG GAAAAACAAAGATTATAGTCCATAAGGAGTAAACATGTTTGAATATTTACTCTATGAGGTGACCATTGCACTTGAGGTGATGCCAGAAGAAGCTTGACGAGAAGACAAACTTGTCCCGGAGATAGCAGCTCCACCTTGTCCTGGAGAATTCGTGAGCACACCTTTTCTCTTTAGT AAAGCAGGATGAATGCATGGTAGAACT CCACCGTGGCTAATATGTACGTGCTTTAACAATTCGTTTAACTCGGCATC ATTTCGAACT CCTAACATTATATGTCTTGGCGTAATAGTTTTCCTTTTGTTCGCTTTTGCAGCATTCCCTGACAATTCATTTACTTCAGCCACTAAGTATTCAATAACAGCAGACATGTACACTGATGCAGCGATGGACGTTCGACGAGCATACCGACCTTTTTTCATATAACGGTG AACTCTGCTAACAGAAATCACTAAGCCCGCTCTATTGGATTNTGTGTGTTTCTTGCCACCAGCTGCCTTTCTTGCCTTACCTCTTCCTGACATAATTTCCAATCC GGGTTGACCTCANAAAACAG ] [+] EMBL CD189392 [ AACTACAATACTTCAAATGATGGATAAAATACAATGAAACCATGTA CCCTGACAGG GAAAAACAAAGATTATAGTCCATAAGGAGTAAACATGTTTGAATATTTACTCTATGAGGTGACCATTGCACTTGAGGTGATGCCAGAAGAAGCTTGACGAGAAGACAAACTTGTCCCGGAGATAGCAGCTCCACCTTGTCCTGGAGAATTCGTGAGCACACCTTTTCTCTTTAGT AAAGCAGGATGAATGCATGGTAGAACT CCACCGTGGCTAATATGTACGTGCTTTAACAATTCGTTTAACTCGGCATC ATTTCGAACT CCTAACATTATATGTCTTGGCGTAATAGT ] [-] EMBL CD133206 [ ACTACAATACTTCAAATGATGGATAAAATACAATGAAACCATGTA CCCTGACAGG GAAAAACAAAGATTATAGTCCATAAGGAGTAAACATGTTTGAATATTTACTCTATGAGGTGACCATTGCACTTGAGGTGATGCCAGAAGAAGCTTGACGAGAAGACAAACTTGTCCCGGAGATAGCAGCTCCACCTTGTCCTGGAGAATTCGTGAGCACACCTTTTCTCTTTAGT AAAGCAGGATGAATGCATGGTAGAACT CCACCGTGGCTAATATGTACGTGCTTTAACAATTCGTTTAACTCGGCATC ATTTCGAACT CCTAACATTATATGTCTTGGCGTAATAGTTTTCCTTTTGTTCGCTTTTGCAGCATTCCCTGACAATTCATTTACTTCAGCCACTAAGTATTCAccaggacaa ] [-] EMBL CD133233 [ ACT CAATACTTCAAATGATGGATAAAATCCAATGAAACCATGTA CCCTGACAGG GAAAAACAAAGATTATAGTCCATAAGGAGTAAACATGTTTGAATA TTACTCTATGAGGTGACCATTGCACTTGAGGTGATGCCAGAAGAAGCTTGACGAGAAGACAAACTTGTCCCGGAGATAGCAGCTCCACCTTGTCCTGGAGAATTCGTGAGCACACCTTTTCTCTTTAGT AAAGCAGGATGAATGCATGGTAGAACT CCACCGTGGCTAATATGTACGTGCTTTAACAATTCGTTTAACTCGGCATC ATTTCGAACT CCTAACATTATATGTCTTGGCGTAATAGTTTTCCTTTTGTTCGCTTTTGCAGCATTCCCTGACAATTCATTTACTTCAGCCCCTAAGTATTCAATAACAGCAGACATGTA ] [-] EMBL CD132921 [ ACTACAATACTTCAAATGATGGATAAAATACAATGAAACCATGTA CCCTGACAGG GAAAAACAAAGATTATAGTCCATAAGGAGTAAACATGTTTGAATATTTACTCTATGAGGTGACCATTGCACTTGAGGTGATGCCAGAAGAAGCTTGACGAGAAGACAAACTTGTCCCGGAGATAGCAGCTCCACCTTGTCCTGGAGAATTCGTGAGCACACCTTTTCTCTTTAGT AAAGCAGGATGAATGCATGGTAGAACT CCACCGTGGCTAATATGTACGTGCTTTAACAATTCGTTTAACTCGGCATC ATTTCGAACT CCTAACATTATATGTCTTGGCGTAATAGTTTTCCTTTTGTTCGCTTTTGCAGCATTCCCTGACAATTCATTTACTTCAGCCACTAAGTATTCAATAACAGCA ] [-] EMBL CD083438 [ AAATACAATGAAACCATGTA CCCTGACAGG GAAAAACAAAGATTATAGTCCATAAGGAGTAAACATGTTTGAATATTTACTCTATGAGGTGACCATTGCACTTGAGGTGATGCCAGAAGAAGCTTGACGAGAAGACAAACTTGTCCCGGAGATAGCAGCTCCACCTTGTCCTGGAGAATTCGTGAGCACACCTTTTCTCTTTAGT AAAGCAGGATGAATGCATGGTAGAACT CCACCGTGGCTAATATGTACGTGCTTTAACAATTCGTTTAACTCGGCATC ATTTCGAACT CCTAACATTATATGTCTTGGCGTAATAGTTTTCCTTTTGTTCGCTTTTGCAGCATTCCCTGACAATTCATTTACTTCAGCCACTAAGTATTCAATAACAGCAGACATGTACACTGATGCAGCGATGGACGTTCGACGAGCATACCGACCTTTTTTCATATAACGGTG AACTCTGCTAACAGAAATCACTAAGCCAGCTCTATTGGATTTTGTGTG TTCTTGCCACCAGCTGCCTTTCTTGCCctcgtgcg ] [+] EMBL CD149925 [ GG GAAAAACAAAGATTATAGTCCATAAGGAGTAAACATGTTTGAATATTTACTCTATGAGGTGACCATTGCACTTGAGGTGATGCCAGAAGAAGCTTGACGAGAAGACAAACTTGTCCCGGAGATAGCAGCTCCACCTTGTCCTGGAGAATTCGTGAGCACACCTTTTCTCTTTAGT AAAGCAGGATGAATGCATGGTANAACT CCACCGTGGCTAATATGTACGTGCTTTAACAATTCGTTTAACTCGGCATC ATTTCGAACT CCTAACATTATATGTCTTGGCGTAATAGTTTTCCTTTTGTTTCCTTTTGCAGCATTCCCTGACAATTCGTTTACTTCAGCCACTAAGTATTCAATAACAGCAGACATGTACACTGATGCAACGATGGACGTTCGACGAGCATACCGACCTTTTTTCATATAACGGTGAAACTCTGCTAACAGAAATTACTAA ] [+] EMBL CD149922 [ GG GAAAAACAAAGATTATAGTCCATAAGGAGTAAACATGTTTGAATATTTACTCTATGAGGTGACCATTGCACTTGAGGTGATGCCAGAAGAAGCTTGACGAGAAGACAAACTTGTCCCGGAGATAGCAGCTCCACCTTGTCCTGGAGAATTCGTGAGCACACCTTTTCTCTTTAGT AAAGCAGGATGAATGCATGGTAGAACT CCACCGTGGCTAATATGTACGTGCTTTAACAATTCGTTTAACTCGGCATC ATTTCGAACT CCTAACATTATATGTCTTGGCGTAATAGTTTTCCTTTTGTTCGCTTTTGCAGCATTCCCTGACAATTCGTTTACTTCAGCCACTAAGTATTCAATAACAACAGACATGTACACTGATGCACCGATGGACGTTCAACAAACCTTCCGACCTTTTTTCATATAAACGTGAAACTTTGCTAACAGAAATCACTAAc ] [-] EMBL CD180488 [ ACTTGAGGTGATGCCAGAAGAAGCTTGACGAGAAGACAAACTTGTCCCGGAGATAGCAGCTCCACCTTGTCCTGGAGAATTCGTGAGCACACCTTTTCTCTTTAGT AAAGCAGGATGAATGCATGGTAGAACT CCACCGTGGCTAATATGTACGTGCTTTAACAATTCGTTTAACTCGGCATC ATTTCGAACT CCTAACATTATATGTCTTGGCGTAATAGTTTTCCTTTTGTTCGCTTTTGCAGCATTGCCTGACAATTCATTTACTTCAGCCACTAAGTATTCAATAACAGCAGACATGTACACTGATGCAGCGATGGACGTTCGACGAGCATACCGACCTTTTTTCATATAACGGTG AACTCTGCTAACAGAAATCACTAAGCCAGCTCTATTGGATTTTGTGTGTTTCTTGCCACCAGCTGCCTTTCTTGCCTTACCTCTT ] [-] EMBL CD136361 [ GGAGAATTCGTGAGCACACC TTTCTCTNTAGT AAAGCAGGATGAATGCATGGTAGAACT CCACCGTGGCTAATATGTACGTGCTTTAACAATTCGTTTAACTCGGCATC ATTTCGAACT CCTAACATTATATGTCTTGGCGTAATAGTTTTCCTTTTGTTCGCTTTTGCAGCATTCCCTGACAATTCATTTACTTCAGCCACTAAGTATTCAATAACAGCAGACATGTACACTGATGCAGCGATGGACGTTCGACGAGCATACCGACCTTTTTTCATATAACGGTG AACTCTGCTAACAGAAATCACTAAGCCAGCTCTATTGGATTTTGTGTGTTT ] [-] EMBL CD182038 [ AAATCGTGAGCACACCTTTTCTC TTAGTNAAAGCAGGATGAATGCATGGTAG ACTNCCACCGTGGCTAATATGTACGTGCTTACAAAATTCGTTAANCTCGGCATC ATTTCG ACTCCCTAACATTATATGTCTTGGCGTAATAGTTTTCCTTTTGTTCGCTTTTGCAGCATTCCCTGACAATTCATTTACTTCAGCCACTAAGTATTCAATAACAGCAGACATGTACACTGATGCAGCGATGGACGTTCGACGAGCATACCGACCTTTTTTCATATAACGGTG AACTCTGCTAACAGAAATCACTAAGCCAGCTCTATTGGATTTTGTGTGTTTCTTGCCACCAGCTGCCTTTCTTGCCTTACCTCTTCCTGACATAATTTCCAATCCAGGGCAGCCCACAATCGATCCCCGCCCC] [-] EMBL CD092053 [ GTGAGCACACCTTTTCTCTTTAGT AAAGCAGGATGAATGCATGGTAGAACT CCACCGTGGCTAATATGTACGTGCTTTAACAATTCGTTTAACTCGGCATC ATTTCGAACT CCTAACATTATATGTCTTGGCGCAATAGTTTTCCTTTTGTTCGCTTTTGCAGCATTCCCTGACAATTCATTTACTTCAGCCACTAAGTATTCAATAACAGCAGACATGTACACTGATGCAGCGATGGACGTTCGACGAGCATACCGACCTTTTTTCATATAACGGTG AACTCTGCTAACAGAAATCACTAAGCCAGCTCTATTGGATTTTGTGTGTTTCTTGCCACCAGCTGCCTTTCTTGCCTTACCTCTTCCTGACATAATTTCCA ] [-] EMBL CD136419 [ GTACGTGCTTTAACAATTCGTTTAACTCGGCATC ATTTCGAACT CCTAACATTATATGTCTTGGCGTAATAGTTTTCCTTTTGTTCGCTTTTGCAGCATTCCCTGACAATTCATTTACTTCAGCCACTAAGTATTCAATAACAGCAGACATGTACACTGATGCAGCGATGGACGTTCGACGAGCATACCGACCTTTTTTCATATAACGGTG AACTCTGCTAACAGAAATCACTAAGCCAGCTCTATTGGATTTTGTGTGTTT ] [-] EMBL CD136353 [ GTACGTGCTTTAACAATTCGTTTAACTCGGCATC ATTTCGAACT CCTAACATTATATGTCTTGGCGTAATAGTTTTCCTTTTGTTCGCTTTTGCAGCATTCCCTGACAATTCATTTACTTCAGCCACTAAGTATTCAATAACAGCAGACATGTACACTGATGCAGCGATGGACGTTCGACGAGCATACCGACCTTTTTTCATATAACGGTG AACTCTGCTAACAGAAATCACTAAGCCAGCTCTATTGGATTTTGTGTGTTT ] consensusID : consensus_11084#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 582 fasta sequence [GCTACTATACTTCAAATGATGGATAGGAAGCCATGAAACCATGTCCCTCTATGAGGTGCCCACTGCACTCGAGGTGATGCCAGAAGAAGCTTGTCGAAACGACAAACTTGTCCCGATGATAGCAGCTCCACCTTGTCCTGGAGAATTCGTGAGCACACCTTTTCTCTTTAGTAAAGCAGGATGAATGCATGGTAGAACTCCACCGTGGCTAATATGTACGTGCTTTAACAATTCGTTTAACTCGGCATCATTTCGAACTCCTAACATTATATGTCTTGGCGTAATAGTTTTCCTTTTGTTCGCTTTTGCAGCATTCCCTGACAATTCATTTACTTCAGCCACTAAGTATTCAATAACAGCAGACATGTACACTGATGCAGCGATGGACGTTCGACGAGCATACCGACCTTTTTTCATATAACGGTGAACTCTGCTAACAGAAATCACTAAGCCAGCTCTATTGGATTTTGTGTGTTTCTTG-CCACCAGC-TGCCTTT-CTTGCCTTACCTCTTCCTGACATAATTTCCAATCCGGGTTGACCTCAAAAAACAGAGACCTAGAGCGCGGTGTACCTAAAAGCCAG] [-] EMBL CD133539 [GCTACTATACTTCAAATGATGGATAGGAAGCCATGAAACCATGTCCCTCTATGAGGTGCCCACTGCACTCGAGGTGATGCCAGAAGAAGCTTGTCGAAACGACAAACTTGTCCCGATGATAGCAGCTCCGCCTGGTCGTGGAGAATTCGTGAGCACACCTTTTCTCTTTAGTAAAGCAGGATGAATGCATGGTAGAACTCCACCGTGGCTAATATGTACGTGCTTTAACAATTCGTTTAACTCGGCATCATTTCGCACTCCTAACATTATATGTCTTGGCGTAATAGTTTTCCTTTTGTTCGCTTTTGCAGCATTCCCTGACAATTCATTTACTTCAGCCACTAAGTATTCAATAACAGCAGACATGTACACTGATGCAGCGATGGACGTTCGACGAGCATACCGACCTTTTTTCATATAACGGTGAACTCTGCTAACAGAAATCACCAAGCCAGCTCTATTGGATTTTGTGTGTTTCTTGTCCACCAGCGTGCCTTTGCTTGCCTTACCTCTTCCTGACATAATTTCCAATCCGGGTTGACCTCAAAAA ] [-] EMBL CD133027 [ TCCACCTTGTCCTGGAGAATTCGTGAGCACACCTTTTCTCTTTAGTAAAGCAGGATGAATGCATGGTAGAACTCCACCGTGGCTAATATGTACGTGCTTTAACAATTCGTTTAACTCGGCATCATTTCGAACTCCTAACATTATATGTCTTGGCGTAATAGTTTTCCTTTTGTTCGCTTTTGCAGCATTCCCTGACAATTCATTTACTTCAGCCACTAAGTATTCAATAACAGCAGACATGTACACTGATGCAGCGATGGACGTTCGACGAGCATACCGACCTTTTTTCATATAACGGTGAACTCTGCTAACAGAAATCACTAAGCCAGCTCTATTGGATTTTGTGTGTTTCTTG CCACCAGC TGCCTTT CTTGCCTTACCTCTTCCTGACATAATTTCCAATCCGGGTTGACCTCAAAAAACAGAGACCTAGAGCGCGGTGTACCTAAAAGCCAG] [-] EMBL CD133514 [ TCCACCTTGTCCTGGAGAACTCGTGAGCACACCTTTTCTCTTTAGTAAAGCAGGATGAATGCATGGTAGAACTCCNCCGTGGCTAATATGTACGTGCTTTAACAATTCGTTTAACTCGGCATCATTTCGAACTCCTAACATTATATGTCTTGGCGTAATAGTTTTCCTTTTGTTCGCTTTTGCAGCATTCCCTGACAATTCATTTACTTCAGCCACTAAGTATTCAATAACAGCAGACATGTACACTGATGCAGCGATGGACGTTCGACGAGCATACCGACCTTTTTTCATATAACGGTGAACTCTGCTAACAGAAATCACTAAGCCAGCTCTATTGGATTTTGTGTGTTTCTTG CCACCAAC TGCCTTT CTTGCCTTACCTCTTCCTGACATAATTTCCAATCCGGGTTGACCTCAAAAAACAGAGACCTAGAGCGCGGTGTACCTAAA ] [-] EMBL CD133484 [ TCCACCTTGTCCTGGAGAATTCGTGAGCACACCTGTTCTCTTTAGTAAAGCAGGATGAATGCATGGTAGAACTCCACCGTGGCTAATATGTACGTGCTTTAACAATTCGTTTAACTCGGCATCATTTCGAACTCCTAACATTATATGTCTTGGCGTAATAGTTTTCCTTTTGTTCGCTTTTGCAGCATTCCCTGACAATTCATTTACTTCAGCCACTAAGTATTCAATAACAGCAGACATGTACACTGATGCAGCGATGGACGTTCGACGAGCACACCGACCTTTTTTCATATAACGGTGAACTCTGCTAACAGAAATCACTAAGCCAGCTCTATTGGATTTTGTGTGTTTCTTG CCACCAGC TGCCTTT CTTGCCTTACCTCTTCCTGACATAATTTCCAATCCGGGTTGACCTCAAAAAACA ] [+] EMBL CD189709 [ GAGCACACCTTTTCTCTTTAGTAAAGCAGGATGAATGCATGGTAGAACTCCACCGTGGCTAATATGTACGTGCTTTAACAATTCGTTTAACTCGGCATCATTTCGAACTCCTAACATTATATGTCTTGGCGTAATAGTTTTCCTTTTGTTCGCTTTTGCAGCATTCCCTGACAATTCATTTACTTCAGCCACTAAGTATTCAGTAACAGCAGACATGTACACTGATGCAGCGATGGACGTTCGACGAGCATACCGACCTTTTTTCATATAACGGTGAACTCTGCTAACAGAAATCACTAAGCCAGCTCTATTGGATTTTGTGTGTTTCTTG CCACCAGC TGCCTTT CTTGCCTTACCTCTTCCTGACATAATTTCCAATCCGGGTTGACCTCAAAAAACAGAGACCTAGg ] [+] EMBL CD133375 [ GAGCACACCTTTTCTCTTTAGTAAAGCAGGATGAATGCATGGTAGAACTCCACCGTGGCTAATATGTACGTGCTTTAACAATTCGTTTAACTCGGCATCATTTCGAACTCCTAACATTATATGTCTTGGCGTAATAGTTTTCCTTTTGTTCGCTTTTGCAGCATTCCCTGACAATTCATTTACTTCAGCCACTAAGTATTCAATAACAGCAGACATGTACACTGATGCAGCGATGGACGTTCGACGAGCATACCGACCTTTTTTCATATAACGGTGAACTCTGCTAACAGAAATCACTAAGCCAGCTCTATTGGATTTTGTGTGTTTCTTG CCACCAGC TGCCTTT CTTGCCTTACCTCTTCCTGACATAATTTCCAATCCGGGTTGACCTTAAAAAACAGAG ] consensusID : consensus_11084#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 402 fasta sequence [CTCCACCTTGTCCTGGAGAATTCGTGAGCACACCTTTTCTCTTTAGTAAAGCAGGATGAATGCATGGTAGAACTCCACCGTGGCTAATATGTACGTGCTTTAACAATTCGTTTAACTCGGCATCATTTCGAACTCCTAACATTATATGTCTTGGCGTAATAGTTTTCCTGAAATGATAGATGTATTATTAAATGAATAAGTTTTTCAAGAATTTCACAAATCATATCATTTAAATCTGTTGTCAAAAACTCAGAAATATTGTGATTCCACCCCATGTAAATGTTCTACGAACAGTAAATTAACATCTCGCAATTTTATAAAAGAAACATACAGTTCGACAATTTTGTAATTGACTAATTGCTATCTAAAAGAATTAGTTTTACATTATATATAAAGAGATTC] [+] EMBL CD189103 [CTCCACCTTGTCCTGGAGAATTCGTGAGCACACCTTTTCTCTTTAGTAAAGCAGGATGAATGCATGGTAGAACTCCACCGTGGCTAATATGTACGTGCTTTAACAATTCGTTTAACTCGGCATCATTTCGAACTCCTAACATTATATGTCTTGGCGTAATAGTTTTCCTGAAATGATAGATGTATTATTAAATGAATAAGTTTTTCAAGAATTTCACAAATCATATCATTTAAATCTGTTGTCAAAAACTCAGAAATATTGTGATTCCACCCCATGTAAATGTTCTACGAACAGTAAATTAACATCTCGCAATTTTATAAAAGAAACATACAGTTCGACAATTTTGTAATTGACTAATTGCTATCTAAAAGAATTAGTTTTACATTATATATAAAGAGATTC] consensusID : consensus_11084#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 331 fasta sequence [GAGCACACCTTTTCTCTTTAGTAAAGCAGGATGAATGCATGGTAGAACTCCACCGTGGCTAATATGTACGTGCTTTAACAATTCGTTTAACTCGGCATCATTTCGAACTCCTAACATTATATGTCTTGGCGTAATAGTTTTCCTGAAATGATAGATGTATTATTAAATGAATAAGTTTTTCAAGAATCTCACAAATCACATCATTTAAATCTGTTGTCAAAAACTCAGAAATATTGTGATTCCACCCCATGTAAATGTTAGTTCGACAATTTTGTAATTGACTAATTGCTATCTAAAAGAATTAGTTTTACATTATATATAAAGAGATTCA] [+] EMBL CD190088 [GAGCACACCTTTTCTCTTTAGTAAAGCAGGATGAATGCATGGTAGAACTCCACCGTGGCTAATATGTACGTGCTTTAACAATTCGTTTAACTCGGCATCATTTCGAACTCCTAACATTATATGTCTTGGCGTAATAGTTTTCCTGAAATGATAGATGTATTATTAAATGAATAAGTTTTTCAAGAATCTCACAAATCACATCATTTAAATCTGTTGTCAAAAACTCAGAAATATTGTGATTCCACCCCATGTAAATGTTAGTTCGACAATTTTGTAATTGACTAATTGCTATCTAAAAGAATTAGTTTTACATTATATATAAAGAGATTC ] [-] EMBL CD183311 [ AGCACACCTTTTCTCTTTAGTAAAGCAGGATGAATGCATGGTAGAACTCCACCGTGGCTAATATGTACGTGCTTTAACAATTCGTTTAACTCGGCATCATTTCGAACTCCTAACATTATATGTCTTGGCATAATAGTTTTCCTGAAATGATAGATGTATTATTAAATGAATAAGTTTTTCAAGAATCTCACAAATCACATCATTTAAATCTGTTGTCAAAAACTCAGAAATATTGTGATTCCACCCCATGTAAATGTTAGTTCGACAATTTTGTAATTGACTAATTGCTATCTAAAAGAATTAGTTTTACATTATATATAAAGAGATTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11084#2 ------------------------------------------------------------ consensus_11084#3 ------------------------------------------------------------ consensus_11084#0 TTATTTTTTTTTTTTTTTTTTTTTTTAGAACTAATAGGCGTTTTATTAAACATGTTGCAA 60 consensus_11084#1 ------------------------------------------------------------ consensus_11084#2 ------------------------------------------------------------ consensus_11084#3 ------------------------------------------------------------ consensus_11084#0 AAGAAAAACATTGAGAATAGAATATAACAGATATAATTAAAGCATTCAATTAAAAAAGGC 120 consensus_11084#1 ------------------------------------------------------------ consensus_11084#2 ------------------------------------------------------------ consensus_11084#3 ------------------------------------------------------------ consensus_11084#0 TAGCAACCGTATTAAAAAGATCGCTAACCATTGGCCAAGGAAAAAAGACAACAAATGTGA 180 consensus_11084#1 ------------------------------------------------------------ consensus_11084#2 ------------------------------------------------------------ consensus_11084#3 ------------------------------------------------------------ consensus_11084#0 AGTACACAAAGTTAGTTGAAACAGATAACTTGAATGGTACAAAAGAGTTTTCCTAATAGA 240 consensus_11084#1 ------------------------------------------------------------ consensus_11084#2 ------------------------------------------------------------ consensus_11084#3 ------------------------------------------------------------ consensus_11084#0 TATTTTACTTTCGTAAAGAAAACAATCCTAAGTATGAGTATTTATCCTGGTAGTAGAATA 300 consensus_11084#1 ------------------------------------------------------------ consensus_11084#2 ------------------------------------------------------------ consensus_11084#3 ------------------------------------------------------------ consensus_11084#0 ACTACAATACTTCAAATGATGGATAAAATACAATGAAACCATGTACCCTGACAGGGAAAA 360 consensus_11084#1 ---------------------------------------------------------GCT 3 consensus_11084#2 ------------------------------------------------------------ consensus_11084#3 ------------------------------------------------------------ consensus_11084#0 ACAAAGATTATAGTCCATAAGGAGTAAACATGTTTGAATATTTACTCTATGAGGTGACCA 420 consensus_11084#1 ACTATACTTCAAATGATGGATAGGAAGCCATGAAACCATGTCC-CTCTATGAGGTGCCCA 62 consensus_11084#2 ------------------------------------------------------------ consensus_11084#3 ------------------------------------------------------------ consensus_11084#0 TTGCACTTGAGGTGATGCCAGAAGAAGCTTGACGAGAAGACAAACTTGTCCCGGAGATAG 480 consensus_11084#1 CTGCACTCGAGGTGATGCCAGAAGAAGCTTGTCGAAACGACAAACTTGTCCCGATGATAG 122 consensus_11084#2 ---CTCCACCTTGTCCTGGAGAATTCGTGAGCACACCTTTTCTCTTTAGTAAAGCAGGAT 57 consensus_11084#3 ----------------------------GAGCACACCTTTTCTCTTTAGTAAAGCAGGAT 32 consensus_11084#0 CAGCTCCACCTTGTCCTGGAGAATTCGTGAGCACACCTTTTCTCTTTAGTAAAGCAGGAT 540 consensus_11084#1 CAGCTCCACCTTGTCCTGGAGAATTCGTGAGCACACCTTTTCTCTTTAGTAAAGCAGGAT 182 ******************************** consensus_11084#2 GAATGCATGGTAGAACTCCACCGTGGCTAATATGTACGTGCTTTAACAATTCGTTTAACT 117 consensus_11084#3 GAATGCATGGTAGAACTCCACCGTGGCTAATATGTACGTGCTTTAACAATTCGTTTAACT 92 consensus_11084#0 GAATGCATGGTAGAACTCCACCGTGGCTAATATGTACGTGCTTTAACAATTCGTTTAACT 600 consensus_11084#1 GAATGCATGGTAGAACTCCACCGTGGCTAATATGTACGTGCTTTAACAATTCGTTTAACT 242 ************************************************************ consensus_11084#2 CGGCATCATTTCGAACTCCTAACATTATATGTCTTGGCGTAATAGTTTTCCTGAAATGA- 176 consensus_11084#3 CGGCATCATTTCGAACTCCTAACATTATATGTCTTGGCGTAATAGTTTTCCTGAAATGA- 151 consensus_11084#0 CGGCATCATTTCGAACTCCTAACATTATATGTCTTGGCGTAATAGTTTTCCTTTTGTTCG 660 consensus_11084#1 CGGCATCATTTCGAACTCCTAACATTATATGTCTTGGCGTAATAGTTTTCCTTTTGTTCG 302 **************************************************** * consensus_11084#2 ---TAGATGTATTATTAAATGAATAAGTTTTTC--------AAGAATTTCACAA-----A 220 consensus_11084#3 ---TAGATGTATTATTAAATGAATAAGTTTTTC--------AAGAATCTCACAA-----A 195 consensus_11084#0 CTTTTGCAGCATTCCCTGACAATTCATTTACTTCAGCCACTAAGTATTCAATAACAGCAG 720 consensus_11084#1 CTTTTGCAGCATTCCCTGACAATTCATTTACTTCAGCCACTAAGTATTCAATAACAGCAG 362 * * * *** * * * * ** * *** ** * ** consensus_11084#2 TCATATCATTTAAATCTGTTGTCAAAAACTCAGAAATATTGTGATTCCACCCCATGTAAA 280 consensus_11084#3 TCACATCATTTAAATCTGTTGTCAAAAACTCAGAAATATTGTGATTCCACCCCATGTAAA 255 consensus_11084#0 ACATGTACACTGATGCAGCGATGGACGTTCGACGAGCATACCGACCTTTTTTCATATAAC 780 consensus_11084#1 ACATGTACACTGATGCAGCGATGGACGTTCGACGAGCATACCGACCTTTTTTCATATAAC 422 ** * * * * * * * * * ** ** *** *** consensus_11084#2 TGT----TCTACGAACAGTAAATTAACATCTCGCAATTTTATAAAAGAAACATACAGTTC 336 consensus_11084#3 TGT----T-----------------------------------------------AGTTC 264 consensus_11084#0 GGTGAACTCTGCTAACAGAAATCACTAAGCCAGCTCTATTGGATTTTGTGTGTTTCTTGC 840 consensus_11084#1 GGTGAACTCTGCTAACAGAAATCACTAAGCCAGCTCTATTGGATTTTGTGTGTTTCTTGC 482 ** * * * consensus_11084#2 GACAATTT--TGTAATTGACTAATTGCTATCTAAAAGAATT---AGTTTTACATTATATA 391 consensus_11084#3 GACAATTT--TGTAATTGACTAATTGCTATCTAAAAGAATT---AGTTTTACATTATATA 319 consensus_11084#0 CACCAGCTGCCTTTCTTGCCTTACCTCTTCCTGACATAATTTCCAATCCGGGTTGACCTC 900 consensus_11084#1 CACCAGCTGCCTTTCTTGCCTTACCTCTTCCTGACATAATTTCCAATCCGGGTTGACCTC 542 ** * * * *** ** * ** ** * * **** * * * * * consensus_11084#2 TAAAGAGATTC----------------------------- 402 consensus_11084#3 TAAAGAGATTCA---------------------------- 331 consensus_11084#0 ANAAAACAGCCGCCCC------------------------ 916 consensus_11084#1 AAAAAACAGAGACCTAGAGCGCGGTGTACCTAAAAGCCAG 582 ** * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||