|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11091#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 1353 fasta sequence
[AATGACTGCAGATGTTCTAAAAGCATTGCCTCCTGATGTACGCACTTTAAAACTAAGTGGGCATGTTGGCTTCGACAGTTTGCCAGATCAATTAGTCAACAAGGCTATCAGCCAAGGATTCGTGTTTAATATACTATGTGTCGGTGAGACTGGAATTGGAAAGTCCACTTTACTGGAGACTCTATTTAACCAGAAGTTTGATTTCAGTCCATCAACTCATGATCTTACAGATCCCAAGTTAAAAGCTGTGACATATGATCTCAAAGAAGCTAATGTTAAGCTTAAGTTAACGGTAGTAGAGACTTGTGGGTACGGTGATCAGATTAATAAGGAAAATAATATAAAACCTGTTGTTGATTATATCGATAACCAGTTTGAAAACTATCTACAAGAAGAACTGAAAATGAAAAGGTCTATGCAAGCATTTCATGACACCAGGGTTCATGTCTGTCTTTATTTTATCGCACCTACTGGACACAGTCTAAAGTCAATTGA-TTTGGTTGCAATGAAAAAATTGGAGAACAAAGTTAATGTCAT-CCCTGTAATAGCAAAATCAGATACAATAACCAAATCTGAATTACAAAAGTTTAAAGCAAGAATCCTCAGTGAAATACAGTCTAATGAAATCGGTATTTACCAGTTTCCTACTGATGATGAAGCTGGTAGTGAAACT-AATAGTGT-ATGAATCAACACATCCCATTCGCTGTTGTGGGTAGCTCAGAAGAAGTTAAAATCAATGGAAAAACAGTACGTGTTCGACAGTATCCATGGGGTTCAGTTCAAGTAGAAAATGAAAATCACTGTGACTTTGTCAGACTTCGAGAGATGCTATTACGTGTGAATATGGAAGATTTACGTGAACGTACACATGGTGTACATTACGAAACTTATCGACGTCAACGCTTAATCGAAATGGGATTTCGTGATGATGAGAAAATGTCACTTCAGGAAACCTATGAAAAGCGTCGTGAGCTTCAAAGGAAAGAATTACAACAAAAGGAAGAAGAAATGAGACAAATGTTTGTTCAGCGTGTTAAAGAAAAAGAACAAGTTTTAAAAGAAGCAGAGCGTGAGCTACAAACCAAATTTGAAAGTCTAAAGAAAACGCACGCCGAGGAAAAGAAGAAACTTGAAGAGAAGAAACGCTTTTTGGAAGAGGAAATAGCCGCTTTCGAACGTCGGAAGCAGCTTGCGGAACAAGCAAGAATCCTCAGTGAAATACAGTCTAATGAAATCGGTATTTACCAGTTTCCTACTGATGATGAAGCTGTTAGTGAAACTAATAGTGNTATGAAATCACACATCCCATTCGCTGTTGTGGGTAGCTCAGAAGAGTTAAAATCATGGAAAACA]
[-] EMBL CD183567 [AATGACTGCAGATGTTCTAAAAGCAAAGCCTCCTGATGTACGCACTTTAAAACTAAGTGGGCATGTTGGCTTCGACAGTTTGCCAGATCAATTAGTCAACAAGGCTATCAGCCAAGGATTCGTGT ]
[+] EMBL CD128405 [ ACTGCAGATGTTCTAAAAGCATTGCCTCCTGATGTACGCACTTTAAAACTAAGTGGGCATGTTGGCTTCGACAGTTTGCCAGATCAGTTAGTCAACAAGGCTATCAGCCAAGGATTCGTGTTTAATATACTATGTGTCGGTGAGACTGGAATTGGAAAGTCCAC TTACTGGAGACTCTTTTTAACCAGAAGTTTGATTTCAGTCCATCAACTCATGATCTTACAGATCCCAAGTTAAAAGCTGTGACATATGATCTCAAAGAAGCTAATGTTAAGCTTAAGTTAACGGTAGTAGAGACTTGTGGGTACGGTGATCAGATTAATAAGGAAAATAATATAAAACCTGTTGTTGATTATATCGATAACCAGTTTGAAAACTATCTACAAGAAGAAC ]
[+] EMBL AI976805 [ GATGTTCTAAAAGCATTGCCTCCTGATGTACGCACTTTAAAACTAAGTGGGCATGTTGGCTTCGACAGTTTGCCAGATCAATTAGTCAACAAGGCTATCAGCCAAGGATTCGTGTTTAATATACTATGTGTCGGTGAGACTGGAATTGGAAAGTCCACTTTACTGGAGACTCTATTTAACCAGAAGTTTGATTTCAGTCCATCAAATCATGATCTTACAGATCCCAAGTTAAAAGCTGTGACATATGATCTCAAAGAAGCTAATGTTAAGCTTAAGTTAACGGTAGTAGAGACTTGTGGGTACGGTGATCAGATTAATAAGGAAAATAATATAAAACCTGTTGTTGATTATATCGATAACCAGTTTGAAAACTATCTACAAGAAGAACTGAAAATGAAAAGGTCTATGCAAGCATTTCATGACACCAGGGTTCATGTCTGTCTTTATTTTATCGCACCTACTGGACACAGTCTAAAGTCAATTGA TTg ]
[+] EMBL BF936427 [ GCATTGCCTCCTGATGTACGCACTTTAAAACTAAGTGGGCATGTTGGCTTCGACAGTTTGCCAGATCAATTAGTCAACAAGGCTATCAGCCAAGGATTCGTGTTTAATATACTATGTGTCGGTGAGACTGGAATTGGAAAGTCCACTTTACTGGAGACTCTATTTAACCAGAAGTTTGATTTCAGTCCATCAAATCATGATCTTACAGATCCCAAGTTAAAAGCTGTGACATATGATCTCAAAGAAGCTAATGTTAAGCTTAAGTTAACGGTAGTAGAGACTTGTGGGTACGGTGATCAGATTAATAAGGAAAATAATATAAAACCTGTTGTTGATTATATCGATAACCAGTTTGAAAACTATCTACAAGAAGAACTGAAAATGAAAAGGTCTATGCAAGCATTTCATGACACCAGGGTTCATGTCTGTCTTTATTTTATCGCACCTACTGGACACAGTCTAAAGTCAATTGATTTTGGTTGCAATGAAAAAATTGGAGAACAAAGTTAATGTCAT CCCTGGTATAGCAAAATCAGATACAATAACCAAATCTGAATTACAAAAGTTTAAAGCAAGAATCCTCAGTGAAATACAGTCTAATGAAATCGGTATTTACCAGTTTCCTACTGATGATGAAACTtg ]
[+] EMBL BF936953 [ GTGGGCATGTTGGCTTCGACAGTTTGCCAGATCAATTAGTCAACAAGGCTATCAGCCAAGGATTCGTGTTTAATATACTATGTGTCGGTGAGACTGGAATTGGAAAGTCCACTTTACTGGAGACTCTATTTAACCAGAAGTTTGATTTCAGTCCATCAAATCATGATCTTACAGATCCCAAGTTAAAAGCTGTGACATATGATCTCAAAGAAGCTAATGTTAAGCTTAAGTTAACGGTAGTAGAGACTTGTGGGTACGGTGATCAGATTAATAAGGAAAATAATATAAAACCTGTTGTTGATTATATCGATAACCAGTTTGAAAACTATCTACAAGAAGAACTGAAAATGAAAAGGTCTATGCAAGCATTTCATGACACCAGGGTTCATGTCTGTCTTTATTTTATCGCACCTACTGGACACAGTCTAAAGTCAATTGA TTTGGTTGCAATGAAAAAATTGGAGAACAAAGTTAATGTCAT CCCTGTAATAGCAAAATCAGATACAATAACCAAATCTGAATTACAAAAGTTTAAAGCAAGAATCCTCAGTGAAATACAGTCTAATGAAATCGGTATTTACCAGTTTCCTACTGATGATGAAGCTGGTAGTGAAACTAAATAGTGT ATGAATCAACACATt ]
[+] EMBL CD191803 [ TGGGCATGTTGGCTTCGACAGTTTGCCAGATCAATTAGTCAACAAGGCTATCAGCCAAGGATTCGTGTTTAATATACTATGTGTCGGTGAGACTGGAATTGGAAAGTCCACTTTACTGGAGACTCTTTTTAACCAGAAGTTTGTTTTCAGTCCATCAACTCATGATCTTACAGATCCCAAGTTAAAAGCTGTGACATATGATCTCAAAGAAGCTAATGTTAAGCTTAAGTTAACGGTAGTAGAGACTTGTGGGTACGGTGATCAGATTAATAAGGAAAATAATATAAAACCTGTTGCTGATTATATCGATAACCAGTTTGAAAACTATCTACAAGAAGAACTGAAAATGAAAAGGTCTATGCAAGCATTTCATGACACCAGGGTTCATGTCTGTCTTTATTTTATCGCACCTACTGGACACAGTTTAAAGTCAATTGA TTTGGTTGCAATGAAAAAATTGGAGAACANAGTTAATGTCATCCCCTGTAATAGC AAATCAGATA ]
[+] EMBL CD168479 [ GGAATTGGAAAGTCCACTTTACTGGAGACTCTATTTAACCAGAAGTTTGATTTCAGTCCATCAACTCATGATCTTACAGATCCCAAGTTAAAAGCTGTGACATATGATCTCAAAGAAGCTAATGTTAAGCTTAAGTTAACGGTAGTAGAGACTTGTGGGTACGGTGATCAGATTAATAAGGAAAATAATATAAAACCTGTTGTTGATTATATCGATAATCAGTTTGAAAACTATCTACAAGAAGAACTGAAAATGAAAAGGTCTt ]
[+] EMBL CD168480 [ CTCATGATCTTACAGATCCCAAGTTAAAAGCTGTGACATATGATCTCAAAGAAGCTAATGTTAAGCTTAAGTTAACGGTAGTAGAGACTTGTGGGTACGGTGATCAGATTAATAAGGAAAATAATATAAAACCTGTTGTTGATTATATCGATAATCAGTTTGAAAACTATCTACAAGAAGAACTGAAAATGAAAAGGTCTATGCAAGCATTTCATGACACCAGGGTTCATGTCTGTCTTTATTTTATCGCACCTACTGGACACAGTCTAAAGTCAATTGA TTTGGTTGCAATGAAAA ]
[-] EMBL CD187093 [ AAAGTCAATTGA TTTGGTTGCAATGAAAAAATTGGAGAACAAAGTTAATGTCAT CCCTGTAATAGCAAAATAAGATACAATAACCAAATCTGAATTACAAAAGTTTAAAGCAAGAATCCTCAGTGAAATACGGTCTAATGAAATCGGTATTTACCAGTTTCCTACTGATGATGAAGCTGTTAGTGAAACT AATAGTGTAATGAATCAACACATCCCATTCGCTGTTGTGGGTAGCTCAGAAGAAGTTAAAATCAATGGAAAAACAGTACGTGTTCGACAGTg ]
[-] EMBL CD145643 [ GTATTTACCAGTTTCCTACTGATGATGAAGCTGTTAGTGAAACT AATAGTGTAATGAATCAACACATCCCATTCGCTGTTGTGGGTAGCTCAGAAGAAGTTAAAATCAATGGAAAAACAGTACGTGTTCGACAGTATCCATGGGGTTCAGTTCAAGTAGAAAATGAAAATCCCTGTGACTTTGTCAGACTTCGAGAGATGCTATTACGTGTGAATATGGAAGATTTACGTGAACGTACACATGGTGTACATTACGAAACTTATCGACGTCAACGCTTAATCGAAATGGGATTTTGTGATAATGAGAAAATGTCTCTTCAGGAAACCTATGTAAAGCGTCGTGAGCTTCAAAGGAA ]
[+] EMBL CD153218 [ CAGAAGAAGTTAAAATCAATGGAAAAACAGTACGTGTTCGACAGTATCCATGGGGTTCAGTTCAAGTAGAAAATGAAAATCACTGTGACTTTGTCAGACTTCGAGAGATGCTATTACGTGTGAATATGGAAGATTTACGTGAACGTACACATGGTGTACATTACGAAACTTATCGACGTCAACGCTTAATCGAAATGGGATTTCGTGATGATGAGAAAATGTCACTTCAGGAAACCTATGAAAAGCGTCGTGAGCTTCAAAGGAAAGAATTACAACAAAAGGAAGAAGAAATGAGACAAATGTTTGTTCAGCGTGTTAAAGAAAAAGAACAAGTTTTAAAAGAAGCAGAGCGTGAGCTACAAACCAAATTTGAAAGTCTAAAGAAAACGCACGCCGAGGAAAAGAAGAAACTTGAAGAGAAGAAACGCTTTTTGGAAGAGGAAATAGCCGCTTTCGAACGTCGGAAGCAGCTTGCGGAACAAGCAAGAATCCTCAGTGAAATACAGTCTAATGAAATCGGTATTTACCAGTTTCCTACTGATGATGAAGCTGTTAGTGAAACTAATAGTGNTATGAAATCACACATCCCATTCGCTGTTGTGGGTAGCTCAGAAGAGTTAAAATCATGGAAAACA]
[+] EMBL CD131264 [ GACAGTATCCATGGGGTTCAGTTCAAGTAGAAAATGAAAATCACTGTGACTTTGTCAGACTTCGAGAGATGCTATTACGTGTGAATATGGAAGATTTACGTGAACGTACACATGGTGTACATTACGAAACTTATCGACGTCAACGCTTAATCGAAATGGGATTTCGTGATGATGAGAAAATGTCACTTCAGGAAACCTATGAAAAGCGTCGTGAGCTTCAAAGGAAAGAATTACAACAAAAGGAAGAAGAAATGAGACAAATGTTTGTTCAGCGTGTTAAAGAAAAAGAACAAGTTTTAAAAGAAGCAGAGCGTGAGCTACAAACCAAATTTGAAAGTCTAAAGAAAACGCACGCCGAGGAAAAGAAGAAACTTGAAGAGAAGAAACGCTTTTTGGAAGAGGAAATAGCCGCTTTCGAACGTCGGAAGCAGCTTGCGGAACAAGCAAGAcaaggaaa ]
[+] EMBL CD130640 [ GTACATTACGAAACTTATCGACGTCAACGCTTAATCGAAATGGGATTTCGTGATGATGAGAAAATGTCACTCCAGGAAACCTATGAAAAGCGTCGTGAGCTTCAAAGGAAAGAATTACAACAAAAGGAAGAAGAAATGAGACAAATGTTTGTTCAGCGTGTTAAAGAAAAAGAACAAGTTTTAAAAGAAGCAGAGCGTGAGCTACAAACCAAATTTGAAAGTCTAAAGAAAACGCACGCCGAGGAAAAGAAGAAACTTGAAGAGAAGAAA ]
[+] EMBL CD193254 [ GGATTTCGTGATGATGAGAAAATGTCACTTCAGGAAACCTATGAAAAGCGTCGTGAGCTTCAAAGGAAAGAATTACAACAAAAGGAAGAAGAAATGAGACAAATGTTTGTTCAGCGTGTTAAAGAAAAAGAACAAGTTTTAAAAGAAGCAGAGCGTGAGCTACAAACCAAATTTGAAAGTCTAAAGAAAACGCACGCCGAGGAAAAGAAGAAACTTGAAGAGAAGAAACGCTTTTTGGAAGAGGAAATAGCCGCTTTCGAACGTCGGAAGCAGC ]
consensusID : consensus_11091#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 469 fasta sequence
[GCCGAGTTAACAGAAGAAGTTAAAA-TCAATGGAAAAACAGTACGTGTTCGACAGTATCCATGGGGTTCAGTTCAAGTAGAAAATGAAAATCACTGTGACTTTGTCAGACTTCGAGAGATGCTATTACGTGTGAATATGGAAGATTTACGTGAACGTACACATGGTGTACATTACGAAACTTATCGACGTCAACGCTTAATCGAAATGGGATTTCGTGATGATGAGAAAATGTCACTTCAGGAAACCTATGAAAAGCGTCGTGAGCTTCAAAGGAAAGAATTACAACAAAAGGAAGAAGAAATGAGACAAATGTTTGTTCAGCGTGTTAAAGAAAAAGAACAAGTTTTAAAAGAAGCAGAGCGTGAGCTANCAACCAAATCTGAATTACAAAAGTTTAAAGCAAGAATCCTCAGTGAAATACAGTCTAATGAAATCGGTATTTACCAGTTTCCTACTGATGATGAAGCTC]
[+] EMBL CD087366 [GCCGAGTTAATTCGATTATTTAAAA TCAATGGAAAAACAGTACGTGTTCGACAGTATTCATGGGGTTCAGTTCAAGTAGAAAATGAAAATCACTGTGACTTTGTCAGACTTCGAGAGATGCTATTACGTGTGAATATGGAAGATTTACGTGAACGTACACATGGTGTACATTACGAAACTTATCGACGTCAACGCTTAATCGAAATGGGATTTCGTGATGATGAGAAAATGTCACTTCAGGAAACCTATGAAAAGCGTCGTGAGCTTCAAAGGAAAGAATTACAACAgcgaaggt ]
[+] EMBL CD153483 [ CAGAAGAAGTTAAAA TCAATGGAAAAACAGTACGTGTTCGACAGTATCCATGGGGTTCAGTTCAAGTAGAAAATGAAAATCACTGTGACTTTGTCAGACTTCGAGAGATGCTATTACGTGTGAATATGGAAGATTTACGTGAACGTACACATGGTGTACATTACGAAACTTATCGACGTCAACGCTTAATCGAAATGGGATTTCGTGATGATGAGAAAATGTCACTTCAGGAAACCTATGAAAAGCGTCGTGAGCTTCAAAGGAAAGAATTACAACAAAAGGAAGAAGAAATGAGACAAATGTTTGTTCAGCGTGTTAAAGAAAAAGAACAAGTTTTAAAAGAAGCAGAGCGTGAGCTANCAACCAAATCTGAATTACAAAAGTTTAAAGCAAGAATCCTCAGTGAAATACAGTCTAATGAAATCGGTATTTACCAGTTTCCTACTGATGATGAAGCTC]
[+] EMBL CD145607 [ CAGAAGAAGTTAAAA TCAATGGAAAAACAGTACGTGTTCGACAGTATCCATGGGGTTCAGTTCAAGTAGAAAATGAAAATCACTGTGACTTTGTCAGACTTCGGGAGATGCTATTACGTGTGAATATGGAAGATTTACGTGAACGTACACATGGTGTACATTACGAAACTTATCGACGTCAACGCTTAATCGAAATGGGATTTCGTGATGATGAGAAAATGTCACTTCAGGAAACCTATGAAAAGCGTCGTGAGCTTCAAAG ]
[+] EMBL CD153046 [ CAGAAGAAGTTAAAA TCAATGGAAAAACAGTACGTGTTCGACAGTATCCATGGGGTTCAGTTCAAGTAGAAAATGAAAATCACTGTGACTTTGTCAGACTTCGAGAGATGCTATTACGTGTGAATATGGAAGATTTACGTGAACGTACACATGGTGTACATTACGAAACTTATCGACGTCAACGCTTAATCGAAATGGGATTTCGTGATGATGAGAAAATGTCACTTCAGGAAACCTATGAAAAGCGTCGTGAGCTTCAAAG ]
[+] EMBL CD202276 [ CAGAAGAAGTTAAAA TCAATGGAAAAACAGTACGTGTTCGACAGTATCCATGGGGTTCAGTTCAAGTAGAAAATGAAAATCACTGTGACTTTGTCAGACTTCGAGAGATGCTATTACGTGTGAATATGGAAGATTTACGTGAACGTACACATGGTGTACATTACGAAACTTATCGACGTCAACGCTTAATCGAAATGGGATTTCGTGATGATGAGAAAATGTCACTTCAGGAAACCTATGAAAAGCGTCGTGAGCTTCAAAG ]
[-] EMBL CD145678 [ AGAAGAAGTTAAAA TCAATGGAAAAACAGTACGTGTTCGACAGTATCCATGGGGTTCAGTTCAAGTAGAAAATGAAAATCACTGTGACTTTGTCAGACTTCGAGAGATGCTATTACGTGTGAATATGGAAGATTTACGTGAACGTACACATGGTGTGCACTACGAAACTTATCGACGTCTACGCTTAATCTAAATGGGATTTCGTGATGATGAGAAAATGTCTCTTCAGGAAACCTATGAAAAGCGTCGTGAGCTTCTAAGGA ]
[-] EMBL CD145396 [ AGAAGAAGTTAAAA TCAATGGAAAAACAGTACGTGTTCGACAGTATCCATGGGGTTCAGTTCAAGTAGAAAATGAAAATCACTGTGACTTTGTCAGACTTCGAGAGATGCTATTACGTGTGAATATGGAAGATTTACGTGAACGTACACATGGTGTACATTACGAAACTTATCGACGTCAACGCTTAATCGAAATGGGATTTCGTGATGATGAGAAAATGTCACTTCAGGAAACCTATGAAAAGCGTCGTGAGCTTCAAAGG ]
[-] EMBL CD145402 [ AGAAGAAGTTAAAA TCAATGGAAAAACAGTACGTGTTCGACAGTATCCATGGGGTTCAGTTCAAGTAGAAAATGAAAATCACTGTGACTTTGTCAGACTTCGAGAGATGCTATTACGTGTGAATATGGAAGATTTACGTGAACGTACACATGGTGTACATTACGAAACTTATCGACGTCAACGCTTAATCGAAATGGGATTTCGTGATGATGAGAAAATGTCACTTCAGGAAACCTATGAAAAGCGTCGTGAGCTTCAAAGG ]
[-] EMBL CD145444 [ AGAAGAAGTTAAAA TCAATGGAAAAACAGTACGTGTTCGACAGTATCCATGGGGTTCAGTTCAAGTAGAAAATGAAAATCACTGTGACTTTGTCAGACTTCGAGAGATGCTATTACGTGTGAATATGGAAGATTTACGTGAACGTACACATGGTGTACATTACGAAACTTATCGACGTCAACGCTTAATCGAAATGGGATTTCGTGATGATGAGAAAATGTCACTTCAGGAAACCTATGAAAAGCGTCGTGAGCTTCAAAGG ]
[-] EMBL CD145455 [ AGAAGAAGTTAAAA TCAATGGAAAATCAGTACGTGTTCGACAGTATCCATGGGGTTCAGTTCAAGTAGAAAATGAAAATCACTGTGACTTTGTCAGACTTCGAGAGATGCTATTACGTGTGAATATGGAAGATTTACGTGAACGTACACATGGTGTACATTACGAAACTTATCGACGTCAACGCTTAATCGAAATGGGATTTCGTGATGATGAGAAAATGTCACTTCAGGAAACCTATGAAAAGCGTCGTGAGCTTCAAAGGAAAGAATTACAACAAAAGGAAGAAGAAATGAGACAAATGTTTGTTCAGCGTGTTAAAGAAAAAGAACAAGTTT ]
[-] EMBL CD145660 [ AGAAGAAGTTAAAA TCAATGGAAAAACAGTACGTGTTCGACAGTATCCATGGGGTTCAGTTCCAGTAGAAAATGAAAATCCCTGTGACTTTGTCAGACTTCGAGAGATGCTATTACGTGTGAATATGGAAGATTTACGTGAACGTACACATGGCGTGCACTACGAAACTTATCGACGTCAACGCTTAATCGAAATGGGATTTCGTGATGATGAGAAAATGTCTCTTCAGGAAACCTATGAAAAGCGTCGTGAGCTTCTAAGGAA ]
[-] EMBL CD202477 [ AGAAGAAGTTAAAA TCAATGGAAAAACAGTACGTGTTCGACAGTATCCATGGGGTTCAGTTCAAGTAGAAAATGAAAATCACTGTGACTTTGTCGGACTTCGAGAGATGCTATTACGTGTGAATATGGAAGATTTACGTGAACGTACACATGGTGTACATTACGAAACTTATCGACGTCAACGCTTAATCGAAATGGGATTTCGTGATGATGAGAAAATGTCACTTCAGGAAACCTATGAAAAGCGTCGTGAGCTTCAAAGG ]
[-] EMBL CD202494 [ AGAAGAAGTTAAAA TCAATGGAAAAACAGTACGTGTTCGACAGTATCCATGGGGTTCAGTTCAAGTAGAAAATGAAAATCACTGTGACTTTGTCAGACTTCGAGAGATGCTATTACGTGCGAATATGGAAGATTTACGTGAACGTACACATGGTGTACATTACGAAACTTATCGACGTCAACGCTTAATCGAAATGGGATTTCGTGATGATGAGAAAATGTCACTTCAGGAAACCTATGAAAAGCGTCGTGAGCTTCAAAGG ]
[-] EMBL CD202533 [ AGAAGAAGTTAAAA TCAATGGAAAAACAGTACGTGTTCGACAGTATCCATGGGGTTCAGTTCAAGTAGAAAATGAAAATCACTGTGACTTTGTCAGACTTCGAGAGATGCTATTACGTGTGAATATGGAAGATTTACGTGAACGTACATATGGTGTACATTACGAAACTTATCGACGTCAACGCTTAATCGAAATGGGATTTCGTGATGATGAGAAAATGTCACTTCAGGAAACCTATGAAAAGCGTCGTGAGCTTCAAAGG ]
[+] EMBL CD153180 [ cgGAAGAAGTTAAAA TCAATGGAAAAACAGTACGTGTTCGACAGTATCCATGGGGTTCAGTTCAAGTAGAAAATGAAAATCACTGTGACTTTGTCAGACTTCGAGAGATGCTATTACGTGTGAATATGGAAGATTTACGTGAACGTACACATGGTGTACATTACGAAACTTATCGACGTCAACGCTTAATCGAAATGGGATTTCGTGATGATGAGAAAATGTCACTTCAGGAAACCTATGAAAAGCGTCGTGAGCTTCAAAG ]
[+] EMBL CD087364 [ TTAAAAGTC ATGGAAAAACAGTACGTGTTCGACAGTATCCATGGGGTTCAGTTCAAGTAGAAAATGAAAATCACTGTGACTTTGTCAGACTTCGAGAGATGCTATTACGTGTGAATATGGAAGATTTACGTGAACGTAC ]
consensusID : consensus_11091#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 324 fasta sequence
[GATTCGTGTTTAATATACTATGTGTCGGTGAGACTGGAATTGGAAAGTCCACTTTACTGGAGACTCTTTTTAACCAGAAGTTTGATTTCAGTCCATCAACTCATGATCTTACAGATCCCAAGTTAAAAGCTGTGACATATGATCTCAAAGAAGCTAATGTTAGGCTTAAGTTAACGGTAGTAGAGACTTGTGGGTACGGTGATCAGATTAATAAGGAAAATAATATAAAACCTGTTGTTGATTATATCGATAACCAGTTTGAAAACTATCTACAAGAAGAACTGAAAATGAAAAGGTCTATGCAACTTGGCCTGCCATAAGCTA]
[-] EMBL CD061163 [GATTCGTGTTTAATATACTATGTGTCGGTGAGACTGGAATTGGAAAGTCCACTTTACTGGAGACTCTTTTTAACCAGAAGTTTGATTTCAGTCCATCAACTCATGATCTTACAGATCCCAAGTTAAAAGCTGTGACATATGATCTCAAAGAAGCTAATGTTAGGCTTAAGTTAACGGTAGTAGAGACTTGTGGGTACGGTGATCAGATTAATAAGGAAAATAATATAAAACCTGTTGTTGATTATATCGATAACCAGTTTGAAAACTATCTACAAGAAGAACTGAAAATGAAAAGGTCTATGCAACTTGGCCTGCCATAAGCTA]
consensusID : consensus_11091#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 239 fasta sequence
[GAAACTTGAAGAGAAGAAACGCTTTTTGGAAGAGGAAATAGCCGCTTTCGAACGTCGGAAGCAGCTTGCGGAACAAGCAAGACAAGGAAATCTGACTATGAAAAAAAGGAAATAAACTATTTGACGAGAGTACAGCTAGTCTTCACATTACTTAATAATTCACTTTAGCACTATGATTTCCGTTTATTGCTTTTGTTAATCTCACTTCTCTTTTATAGATTAGTTCAATTTTTTTCCTG]
[+] EMBL CD169829 [GAAACTTGAAGAGAAGAAACGCTTTTTGGAAGAGGAAATAGCCGCTTTCGAACGTCGGAAGCAGCTTGCGGAACAAGCAAGACAAGGAAATCTGACTATGAAAAAAAGGAAATAAACTATTTGACGAGAGTACAGCTAGTCTTCACATTACTTAATAATTCACTTTAGCACTATGATTTCCGTTTATTGCTTTTGTTAATCTCACTTCTCTTTTATAGATTAGTTCAATTTTTTTCCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11091#0 AATGACTGCAGATGTTCTAAAAGCATTGCCTCCTGATGTACGCACTTTAAAACTAAGTGG 60
consensus_11091#1 ------------------------------------------------------------
consensus_11091#2 ------------------------------------------------------------
consensus_11091#3 ------------------------------------------------------------
consensus_11091#0 GCATGTTGGCTTCGACAGTTTGCCAGATCAATTAGTCAACAAGGCTATCAGCCAAGGATT 120
consensus_11091#1 ------------------------------------------------------------
consensus_11091#2 ------------------------------------------------------------
consensus_11091#3 ------------------------------------------------------------
consensus_11091#0 CGTGTTTAATATACTATGTGTCGGTGAGACTGGAATTGGAAAGTCCACTTTACTGGAGAC 180
consensus_11091#1 ------------------------------------------------------------
consensus_11091#2 ------------------------------------------------------------
consensus_11091#3 ------------------------------------------------------------
consensus_11091#0 TCTATTTAACCAGAAGTTTGATTTCAGTCCATCAACTCATGATCTTACAGATCCCAAGTT 240
consensus_11091#1 ------------------------------------------------------------
consensus_11091#2 ------------------------------------------------------------
consensus_11091#3 ------------------------------------------------------------
consensus_11091#0 AAAAGCTGTGACATATGATCTCAAAGAAGCTAATGTTAAGCTTAAGTTAACGGTAGTAGA 300
consensus_11091#1 ------------------------------------------------------------
consensus_11091#2 ------------------------------------------------------------
consensus_11091#3 ------------------------------------------------------------
consensus_11091#0 GACTTGTGGGTACGGTGATCAGATTAATAAGGAAAATAATATAAAACCTGTTGTTGATTA 360
consensus_11091#1 ------------------------------------------------------------
consensus_11091#2 ------------------------------------------------------------
consensus_11091#3 ------------------------------------------------------------
consensus_11091#0 TATCGATAACCAGTTTGAAAACTATCTACAAGAAGAACTGAAAATGAAAAGGTCTATGCA 420
consensus_11091#1 ------------------------------------------------------------
consensus_11091#2 ------------------------------------------------------------
consensus_11091#3 ------------------------------------------------------------
consensus_11091#0 AGCATTTCATGACACCAGGGTTCATGTCTGTCTTTATTTTATCGCACCTACTGGACACAG 480
consensus_11091#1 ------------------------------------------------------------
consensus_11091#2 ------------------------------------------------------------
consensus_11091#3 ------------------------------------------------------------
consensus_11091#0 TCTAAAGTCAATTGATTTGGTTGCAATGAAAAAATTGGAGAACAAAGTTAATGTCATCCC 540
consensus_11091#1 ------------------------------------------------------------
consensus_11091#2 ------------------------------------------------------------
consensus_11091#3 ------------------------------------------------------------
consensus_11091#0 TGTAATAGCAAAATCAGATACAATAACCAAATCTGAATTACAAAAGTTTAAAGCAAGAAT 600
consensus_11091#1 ------------------------------------------------------------
consensus_11091#2 ------------------------------------------------------------
consensus_11091#3 ------------------------------------------------------------
consensus_11091#0 CCTCAGTGAAATACAGTCTAATGAAATCGGTATTTACCAGTTTCCTACTGATGATGAAGC 660
consensus_11091#1 ------------------------------------------------------------
consensus_11091#2 ------------------------------------------------------------
consensus_11091#3 ------------------------------------------------------------
consensus_11091#0 TGGTAGTGAAACTAATAGTGTATGAATCAACACATCCCATTCGCTGTTGTGGGTAGCTCA 720
consensus_11091#1 ------------------------------------------------GCCGAGTTAACA 12
consensus_11091#2 ------------------------------------------------------------
consensus_11091#3 ------------------------------------------------------------
consensus_11091#0 GAAGAAGTTAAAATCAATGGAAAAACAGTACGTGTTCGACAGTATCCATGGGGTTCAGTT 780
consensus_11091#1 GAAGAAGTTAAAATCAATGGAAAAACAGTACGTGTTCGACAGTATCCATGGGGTTCAGTT 72
consensus_11091#2 --------------------------GATTCGTGTTTAATA-TA-CTATGTG--TCGGTG 30
consensus_11091#3 -----------------------------------------------------------G 1
consensus_11091#0 CAAGTAGAAAATGAAAATCACTGTGACTTTGTCAGACTTCGAGAGATGCTATTACGTGTG 840
consensus_11091#1 CAAGTAGAAAATGAAAATCACTGTGACTTTGTCAGACTTCGAGAGATGCTATTACGTGTG 132
consensus_11091#2 AGACTGGAATTGGAAAGTCC-----ACTTTACTGGA-------GACTCTTTTTAACCAGA 78
consensus_11091#3 AAACTTGAAGAGAAGAAACGCT----TTTTGGAAGAGGA-AATAGCCGCTTTCGAACGTC 56
* * *** * * * *** ** * *
consensus_11091#0 AATATGGAAGATTTACGTGAACGTACACATGGTGT-ACATTACGAAACTTATCGACGTCA 899
consensus_11091#1 AATATGGAAGATTTACGTGAACGTACACATGGTGT-ACATTACGAAACTTATCGACGTCA 191
consensus_11091#2 AGTTTG----ATTTCAGTCCATCAACTCATGATCTTACAGATCCCAAGTTAAAAGCTGTG 134
consensus_11091#3 GGAA-GCAGCTTGCGGAACAAGCAAGACAAGGAAATCTGACTATGAAAAAAAGGAAATAA 115
* * * * ** * ** *
consensus_11091#0 ACGCTTAATCGAAATGGGATTTCGTGATGATGAGAAAATGTCACT-TCAGGAAACCTATG 958
consensus_11091#1 ACGCTTAATCGAAATGGGATTTCGTGATGATGAGAAAATGTCACT-TCAGGAAACCTATG 250
consensus_11091#2 ACATATGATCTCAA-AGAAGCTAATGTTAGGCTTAAGTTAACGGT-AGTAGAGACTTGTG 192
consensus_11091#3 ACTATTTGACGAGAGTACAGCTAGTCTTCACATTACTTAATAATTCACTTTAGCACTATG 175
** * * * * * * * * * * * **
consensus_11091#0 AAAAGCGTCGTGAGCTTCA-AAGGAAAGAATTACAACAAAAG--GAAGAAGAAATGAGAC 1015
consensus_11091#1 AAAAGCGTCGTGAGCTTCA-AAGGAAAGAATTACAACAAAAG--GAAGAAGAAATGAGAC 307
consensus_11091#2 GGTACGGTGATCAGATTAATAAGGAAAATAATATAAAACCTGTTGTTGATTATATCGATA 252
consensus_11091#3 ATTTCCGTTTATTGCTTTT----GTTAATCTCACTTCTCTTTT-ATAGATTAGTTCAATT 230
** * ** * * * ** * *
consensus_11091#0 AAATGTTTGTTCAGCGTGTTAAAGAAAAAGAACAAGTTTTAAAAGAAGCAGAGCGTGAGC 1075
consensus_11091#1 AAATGTTTGTTCAGCGTGTTAAAGAAAAAGAACAAGTTTTAAAAGAAGCAGAGCGTGAGC 367
consensus_11091#2 ACCAGTTTGAAAACTATCTACAAGAAGAACTGAAAATGAAAAGGTCTATGCAACTTGGCC 312
consensus_11091#3 TTTTTCCTG--------------------------------------------------- 239
**
consensus_11091#0 TACAAACCAAATTTGAAAGTCTAAAGAAAACGCACGCCGAGGAAAAGAAGAAACTTGAAG 1135
consensus_11091#1 TANCAACCAAATCTGAA------------------------------------------- 384
consensus_11091#2 TGCCAT---AAGCTA--------------------------------------------- 324
consensus_11091#3 ------------------------------------------------------------
consensus_11091#0 AGAAGAAACGCTTTTTGGAAGAGGAAATAGCCGCTTTCGAACGTCGGAAGCAGCTTGCGG 1195
consensus_11091#1 ----------------------------------TTACAAA----------AGTTTA--- 397
consensus_11091#2 ------------------------------------------------------------
consensus_11091#3 ------------------------------------------------------------
consensus_11091#0 AACAAGCAAGAATCCTCAGTGAAATACAGTCTAATGAAATCGGTATTTACCAGTTTCCTA 1255
consensus_11091#1 ---AAGCAAGAATCCTCAGTGAAATACAGTCTAATGAAATCGGTATTTACCAGTTTCCTA 454
consensus_11091#2 ------------------------------------------------------------
consensus_11091#3 ------------------------------------------------------------
consensus_11091#0 CTGATGATGAAGCTGTTAGTGAAACTAATAGTGNTATGAAATCACACATCCCATTCGCTG 1315
consensus_11091#1 CTGATGATGAAGCTC--------------------------------------------- 469
consensus_11091#2 ------------------------------------------------------------
consensus_11091#3 ------------------------------------------------------------
consensus_11091#0 TTGTGGGTAGCTCAGAAGAGTTAAAATCATGGAAAACA 1353
consensus_11091#1 --------------------------------------
consensus_11091#2 --------------------------------------
consensus_11091#3 --------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||