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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11094#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 19 consensus length = 1020 fasta sequence
[ATAGGTCAGCAATATCGGCGGTCTTTCCGAAAAATCTGCAAATTGTCAAAAATGGGTCGTCGTTCGGTGAATACTACTAAAAGTGGGAAGTTTATGAACCCAACAGACCAGGCAAGAAAAGAAGCAAGAAAACGAGAACTGAAGAAAAACAAGAAACAACGCATGGCTGTGCGTTATGCGGTGCTTAGGGCCAAAGACCCCCTACAATTATTGGAAGAAACGACTCTCTATGACAAACAAGAATACGATCCCAGTGTTCAAGCTCAACTCAGTGAAAGGGTCATTCAGGAAAAACGCCGAAAGCTGTTGGAAACATTCGACCGTCTTGTTATTCTATATAGGAAAGAAAATGCAGAATATGCCAACCGGCTTCAAGCGGCTCGTCAAGACTATGACAAAAGACGGCATGAAATGATGCTTTATTACGAACAAGTAAAGTTAGCTGAAAGAGTAAAAGCTAGTGAAATTCCGCTCCCAAAACTGCCACAATCACAAATGGGTCTTATAACGTCCGACATACCATTACCT-CCTGGGGGTTACG-CTAAAGGTATTCTGAAGAAATCGTTAGGAGCTCCAGGACTCCCACCTAGTATACTTCCTGCAGGTCGCAAACCACCTGGACCACCTCCAGGAACACCTCCTGAATTGTCAGATAGCGAAGAAGAAGACAATTCTGTTGATAACACGACAAAGCAACGCAAAATCCGGTTCGCTGATGCAGATCCTATGCCAGAGCAAGAAGAACTAAT-TGGTGATTCATC-TCTGCAC-CTCGGTGAGAAATTCACCG-GTGGA-TTTACAACT-ATTAC-TCCTCCGCTTTC-TCAAATCC-CTTTGCCGC-CACC-CATGGC-TTTACC-ATCC-TTTAC-TGGCC-TCATTCCGTACCAGGATATTCCATGGAGCACACTCAGTCCAACTCTTAAGTTCGTTTTCACTTGACACAACAGCCCACACTGTGGAGCTACTACATAGTCATGCTCTCACCGTAGATTTGCACCTTACGTGATACCACATTGATAATGTCTGAAC]
[+] EMBL CD121718 [ATAGGTCAGCAATATCGGCGGTCTTTCCGAAAAATCTGCAAATTGTCAAAAATGGGTCGTCGTTCGGTGAATACTACTAAAAGTGGGAAGTTTATGAACCCAACAGACCAGGCAAGAAAAGAAGCAAGAAAACGAGAACTGGAGAAAAACAAGAAACAACGCATGGCTGTGCGTTATGCGGTGCTTAGGGCCAAAGACCCCCTACAATTATTGGAAGAAACGACTCTCTATGACAAACAAGAATACGATCCCAGTGTTCAAGCTCAACTCAGTGAAAGGGTCATTCAGGAAAAACGCCGAAAGCTGTTGGAAACATTCGACCGTCTTGTTATTCTATATAGGAAAGAAAATGCAGAATATGC ]
[+] EMBL CD121088 [ATAGGTCAGCAATATCGGCGGTCTCTCCGAAAAATCTGCAAATTGTCAAAAATGGGTCGTCGTTCGGTGAATACTACTAAAAGTGGGAAGTTTATGAACCCAACAGACCAGGCAAGAAAAGAAGCAAGAAAACGAGAACTGAAGAAAAACAAGAAACAACGCATGGCTGTGCGTTATGCGGTGCTTAGGGCCAAAGACCCCCTACAATTATTGGAAGAAACGACTCTCTATGACAAACGAGAATACGATCCCAGTGTTCAAGCTCAACTCAGTGAAAGGGTCATTCAGGAAAAACGCCGAAAGCTGTTGGAAACATTCGACCGTCTTGTTATTCTATATAGGAAAGAAAATGCAGAATATGC ]
[+] EMBL CD151832 [ TAGGTCAGCAATATCGGCGGTCTTTCCGAAAAATCTGCAAATTGTCAAAAATGGGTCGTCGTTCGGTGAATACTACTAAAAGTGGGAAGTTTATGAACCCAACAGACCAGGCAAGAAAAGAAGCAAGAAAACGAGAACTGAAGAAAAACAAGAAACAACGCATGGCTGTGCGTTATGCGGTGCTTAGGGCCAAAGACCCCCTACAATTATTGGAAGAAACGACTCTCTATGACAAACAAGAATACGATCCCAGTGCTCAAGCTCAACTCAGTGAAAGGGTCATTCAGGAAAAACGCCGAAAGCTGTTGGAAACATTCGACCGTCTTGTTATTCTATATAGGAAAGAAAATGCAGAATATGCCAACCGGCTTCAAGCGG ]
[+] EMBL CD151887 [ TAGGTCAGCAATATCGGCGGTCTTTCCGAAAAATCTGCAAATTGTCAAAAATGGGTCGTCGTTCGGTGAATACTACTAAAAGTGGGAAGTTTATGAACCCAACAGACCAGGCAAGAAAAGAAGCAAGAAAACGAGAACTGAAGAAAAACAAGAAACAACGCATGGCTGTGCGTTATGCGGTGCTTATGGCCAAAGACCCCCTACAATTATTGGAAGAAACGACTCTCTATGACAAACAAGAATACGATCCCAGCGTTCAAGCTCAACTCAGTGAAAGGGTCATTCAGGAAAAACGCCGAAAGCCGTTGGAAACATTCGACCGTCTTGTTATTCTATATAGGAAAGAAAATGCAGAATATGCCAACCGGCTTCAAGCGG ]
[+] EMBL CD111392 [ TAGGTCAGCAATATCGGCGGTCTTTCCGAAAAATCTGCAAATTGTCAAAAATGGGTCGTCGTTCGGTGAATACTACTAAAAGTGGGAAGTTTATGAACCCAACAGACCAGGCAAGAAAAGAAGCAAGAAAACGAGAACTGAAGAAAAACAAGAAACAACGCATGGCTGTGCGTTATGCGGTGCTTAGGGCCAAAGACCCCCTACAATTATTGGAAGAAACGACTCTCTATGACAAACAAGAATACGATCCCAGTGTTCAAGCTCAACTCAGTGAAAGGGTCATTCAGGAAAAACGCCGAAAGCTGTTGGAAACATTCGACCGTCTTGTTATTCTATATAGGAAAGAAAATGCAGAATATGCCAACCGGCTTCAAGCGGCTCGTCAAGACTATGACAAAAGACGGCATGAAATGATGCTTT ]
[+] EMBL CD185718 [ GAACCCAACAGACCAGGCAAGAAAAGAAGCAAGAAAACGAGAACTGAAGAAAAACAAGAAACAACGCATGGCTGTGCGTTATGCGGTGCTTAGGGCCAAAGACCCCCTGCAATTATTGGAAGAAACGACTCTCTATGACAAACA ]
[+] EMBL CD111203 [ AAGCAAGAAAACGAGAACTGAAGAAAAACAAGAAACAACGCATGGCTGTGCGTTATGCGGTGCTTAGGGCCAAAGACCCCCTACAATTATTGGAAGAAACGACTCTCTATGACAAACAAGAATACGATCCCAGTGTTCAAGCTCAACTCAGTGAAAGGGTCATTCAGGAAAAACGCCGAAAGCTGTTGGAAACATTCGACCGTCTTGTTATTCTATATAGGAAAGAAAATGCAGAATATGCCAACCGGCTTCAAGCGGCTCGTCAAGACTATGACAAAAGACGGCATGAAATGATGCTTTATTACGAACAAGTAAAGTTAGCTGAAAGAGTAAAAGCTAGTGAAATTCCGCTCCCAAAACTGCCACAATCACAAATGGGTCTTATAACGTCCGACATACCATTACCT CCTGGGGGTTACG CTAAAGGTATTCTGAAGAAATCGTTAGGAGCTCCAG ]
[+] EMBL CD111189 [ AAGCAAGAAAACGAGAACTGAAGAAAAACAAGAAACAACGCATGGCTGTGCGTTATGCGGTGCTTAGGGCCAAAGACCCCCTACAATTATTGGAAGAAACGACTCTCTATGACAAACAAGAATACGATCCCAGTGTTCAAGCTCAACTCAGTGAAAGGGTCATTCAGGAAAAACGCCGAAAGCTGTTGGAAACATTCGACCGTCTTGTTATTCTATATAGGAAAGAAAATGCAGAATATGCCAACCGGCTTCAAGCGGCTCGTCAAGACTATGACAAAAGACGGCATGAAATGATGCTTTATTACGAAGAGCTTTAGTTctct ]
[-] EMBL BG931819 [ GTTATGCGGTGCTTAGGGCCAAAGACCCCCTACAATTATTGGAAGAAACGACTCTCTATGACAAACAAGAATACGATCCCAGTGTTCAAGCTCAACTCAGTGAAAGGGTCATTCAGGAAAAACGCCGAAAGCTGTTGGAAACATTCGACCGTCTTGTTATTCTATATAGGAAAGAAAATGCAGAATATGCCAACCGGCTTCAAGCGGCTCGTCAAGACTATGACAAAAGACGGCATGAAATGATGCTTTATTACGAACAAGTAAAGTTAGCTGAAAGAGTAAAAGCTAGTGAAATTCCGCTCCCAGAA ]
[+] EMBL CD098482 [ ctgtGGGCCAAAGACCCCCTACAATTATTGGAAGAAACGACTCTCTATGACAAACAAGAATACGATCCCAGTGTTCAAGCTCAACTCAGTGAAAGGGTCATTCAGGAAAAACGCCGAAAGCTGTTGGAAACATTCGACCGTCTTGTTATTCTATATAGGAAAGAAAATGCAGAATATGCCAACCGGCTTCAAGCGGCTCGTCAAGACTATGACAAAAGACGGCATGAAATGATGCTTTATTACGAACAAGTAAAGTTAGCTGAAAGAGTAAAAGCTAGTGAAATTCCGCTCCCAAAACTGCCACAATCACAAATGGGTCTTATAACGTCCGACATACCATTACCT CCTGGGGGTTACG CTAAAGGTATTCTGAAGAAATCGTTAGGAGCTCC ]
[+] EMBL CD147721 [ AAGCGGCTCGTCAAGACTATGACAAAAGACGGCATGAAATGATGCTTTATTACGAACAAGTAAAGTTAGCTGAAAGAGTAAAAGCTAGTGAAATTCCGCTCCCAAAACTGCCACAATCACAAATGGGTCTTATAACGTCCGACATACCATTACCT CCTGGGGGTTACG CTAAAGGTATTCTGAAGAAATCGTTAGGAGCTCCAGGACTCCCACCTAGTATACTTCCTGCAGGTCGCAAACCACCTGGACCACCTCCAGGAACACCTCCTGAATTGTCAGATAGCGAAGAAGAAGACAATTCTGTTGATAACACGACAAAGCAACGCAAAATCCGGTTCGCTGATGCAGATCCTATGCCAGAGCAAGAAGAACTAAT TGGTGATTCATC TCTGCAC CTCGGTGAGAAATTCACCG GTGGA TTTACAACT ATTAC TCCTCCGCTTTC TCAGAT C CTTTGCTG CA C CATGG TTTAC ]
[-] EMBL CD147926 [ GGCTCGTCAAGACTATGACAAAAGACGGCATGAAATGATGCTTTATTACGAACAAGTAAAGTTAGCTGAAAGAGTAAAAGCTAGTGAAATTCCGCCCCCAAAACTGCCACAATCACAAATGGGTCTTATAACGTCCGACATACCATTACCT CCTGGGGGTTACG CTAAAGGTATTCTGAAGAAATCGTTAGGAGCTCCAGGACTCCCACCTAGTATACTTCCTGCAGGTCGCAAACCACCTGGACCACCTCCAGGAACACCTCCTGAATTGTCAGATAGCGAAGAAGAAGACAATTCTGTTGATAACACGACAAAGCAACGCAAAATCCGGTTCGCTGATGCAGATCCTATGCCAGAGCAAGAAGAACTAAT TGGTGTTTCATC TCTGCAC CTCGGTGAGAAATTCACCG GTGGA TTTACAACT ATTAC TCCTCCGCTTTC TCAAATCC CTTTGCCGC CACC CATGGC TTTACC ]
[-] EMBL CD147331 [ ctTCAAGACTATGACAAAAGACGGCATGAAATGATGCTTTATTACGAACAAGTAAAGTTAGCTGAAAGAGTAAAAGCTAGTGAAATTCCGCTCCCAAAACTGCCACAATCACAAATGGGTCTTATAACGTCCGACATACCATTACCT CCTGGGGGTTACG CTAAAGGTATTCTGAAGAAATCGTTAGGAGCTCCAGGACTCCCACCTAGTATACTTCCTGCAGGTCGCAAACCACCTGGACCACCTCCAGGAACACCTCCTGAATTGTCAGATAGCGAAGAAGAAGACAATTCTGTTGATAACACGACAAAGCAACGCAAAATCCGGTTCGCTGATGCAGATCCTATGCCAGAGCAAGAAGAACTAAT TGGTGATTCATC TCTGCAC CTCGGTGAGAAATTCACCG GTGGA TTTACAACT ATTAC TCCTCCGCTTTC TCAAATCC CTTTGCCGC CACC CATGGC TTTACC ]
[+] EMBL AI975050 [ AAGACGGCATGAAATGATGCTTTATTACGAACAAGTAAAGTTAGCTGAAAGAGTAAAAGCTAGTGAAATTCCGCTCCCAAAACTGCCACAATCACAAATGGGTCTTATAACGTCCGACATACCATTACCT CCTGGGGGTTACG CTAAAGGTATTCTGAAGAAATCGTTAGGAGCTCCAGGACTCCCACCTAGTATACTTCCTGCAGGTCGCAAACCACCTGGACCACCTCCAGGAACACCTCCTGAATTGTCAGATAGCGAAGAAGAAGACAATTCTGTTGATAACACGACAAAGCAACGCAAAATCCGGTTCGCTGATGCAGATCCTATGCCAGAGCAAGAAGAACTAAT TGGTGATTCATC TCTGCAC CTCGGTGAGAAATTCACCG GTGGA TTTACAACT ATTAC TCCTCCGCTTTC TCAAAT ]
[-] EMBL CD181907 [ GGTCTTATAACGTCCGACATACCA TACCTCCCTGNGGG TACGNCTAAAGGTATTCTGAAGANATCGTTAGGAGCTCCAGGACTCCCTCCTAGTATACTTCCTGCAGGTCGCAAACCACCTGGACCACCTCCAGGAACACCTCCTGAATTGTCAGATAGCGAAGAAGAAGACAATTCTGTTGATAACACGACAAAGCAACGCGAAATCCGGTTCGCTGATGCAGATCCTATGCCAGAGCAAGAAGAACTAAT TGGTGATTCATC TCTGCAC CTCGGTGAGAAATTCACCG GTGGA TTTACAACT ATTAC TCCTCCGCTTTC TCAAATCC CTTTGCCGC CACC CATGGC TTTACC ATCC TTTAC TGGCC TCATTC ]
[+] EMBL CD183936 [ CTAAAGGTATTCTGAAGAAATCGTTAGGAGCTCCAGGACTCCCACCTAGTATACTTCCTGCAGGTCGCAAACCACCTGGACCACCTCCAGGAACACCTCCTGAATTGTCAGATAGCGAAGAAGAAGACAATTCTGTTGATAACACGACAAAGCAACGCAAAATCCGGTTCGCTGATGCAGATCCTATGCCAGAGCAAGAAGAACTAAT TGGTGATTCATC TCTGCAC CTCGGTGAGAAATTCACCG GTGGA TTTACAACT ATTAC TCCTCCGCTTTC TCAAATCC CTTTG ]
[-] EMBL CD147489 [ CCCACCTAGTATACTTCCTGCAGGTCGCAAACCACCTGGACCACCTCCAGGAACACCTCCTGAATTGTCAGATAGCGAAGAAGAAGACAATTCTGTTGATAACACGACAAAGCAA ]
[-] EMBL CD147810 [ TATACTTCCTGCAGCTCGCAAACCACCTGGACCACCTCCAGGAACACCTCCTGAATTGTCAGATAGCGAAGAAGAAGACAATTCTGTTGATAACACGACAAAGCAACGCAAAATCCGGTTCGCTGATGCAGATCCTATGCCAGAGCAAGAAGAACTAATCTGGTGATTCAGCGTCTGCACACTCGGTGAGAAATTCACCGCGTGGAGTTTACAACTCATTACGTCCTCCGCTTTCGTCAAATCCGCTTTGCCGCGCACCTCATGGCATTTACCTATCCGTTTACGTGGCCGTCATATCGTACCAGGATATTCCATGGAGCACACTCAGTCCAACTCTTAAGTTCGTTTTCACTTGACACAACAGCCCACACTGTGGAGCTACTACATAGTCATGCTCTCACCGTAGATTTGCACCTTACGTGATACCACATTGATAATGTCTGAAC]
[-] EMBL CD165194 [ CTCCAGGAACACCTCCTGAATTGTCAGATAGCGAAGAAGAAGACAATTCTGTTGATAACACGACAAAGCAACGCAAAATCCGGTTCGCTGATGCAGATCCTATGCCAGAGCAAGAAGAACTAAT TGGTGATTCATC TCTGCAC CTCGGTGAGAAATTCACCG GTGGA TTTACAACT ATTAC TCCTCCGCTTTC TCAAATCC CTTTGC ]
consensusID : consensus_11094#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1015 fasta sequence
[GCAGGCCANAATTCGGCACGAGGGAAATCGTTAGGAGCTCCAGGACTCCCACCTAGTATACTTCCTGCAGGTCGCAAACCACCTGGACCACCTCCAGGAACACCTCCTGAATTGTCAGATAGCGAAGAAGAAGACAATTCTGTTGATAACACGACAAAGCAACGCAAAATCCGGTTCGCTGATGCAGATCCTATGCCAGAGCAAGAAGAACTAATTGGTGATTCATCTCTGCACCTCGGTGAGAAATTCACCGGTGGATTTACAACTATTACTCCTCCGCTTTCTCAAATCCCTTTGCCGCCACCCATGGCTTTACCATCCTTTACTGGCCTCATTCGTCCAGGATTTCCAGGAGCACCTCAGCCAACTCTAAGTCGTTTCACTTACCAACGCCCCACTGGAGCTATACTATCAGCTCCACCTAGTTTGCACCTTCGTGATCCACTTGATAATGCTGAACTTGTAAGTGGTCCAGCTGTAGCGAGCATTCCAACAAATCAACCAAATCCAAGTGGAACTACCATAGAAGCAAAGCCCCAACTGAAAAATTTGATCGGTGACGCAACACGTTTTGTCCCTACAGCTCTTAAAGTACGTAGAATTGTTCGTGATACTAGTGGTCGTCTAATCACTACAGGTGGGGGCACAAGTGTATATGGAACAGCAAAACAACCGAATGCTGTTTATGATCGTGTTGCTAAATCTGATACTACAGGAATTAATTCTGGGTCAGCTACTAGCAAAGATGATGCATATGAAGAGTTTATGCGTGAAATGGAAGGCCTAATATAAGAACACTTTTCAGACTCCATGTATATTTTTATCTTATTTTGAAATCGTCTTTCATATATTGTATATTTTAATGTGTCTTTTTTTACGCATATCTATCTGAAGCAAACATTTTTCATTGAATCCACCTTAAATCCATTGTTTACATGTCTCAAATTATGAACACGTGTTTGCATCAAAAGTTCTCGATGGATACCATTTCTTAATGTAGAAAAAAAAAAAAAAA]
[+] EMBL CD082592 [GCAGGCCANAATTCGGCACGAGGGAAATCGTTAGGAGCTCCAGGACTCCCACCTAGTATACTTCCTGCAGGTCGCAAACCACCTGGACCACCTCCAGGAACACCTCCTGAATTGTCAGATAGCGAAGAAGAAGACAATTCTGTTGATAACACGACAAAGCAACGCAAAATCCGGTTCGCTGATGCAGATCCTATGCCAGAGCAAGAAGAACTAATTGGTGATTCATCTCTGCACCTCGGTGAGAAATTCACCGGTGGATTTACAACTATTACTCCTCCGCTTTCTCAAATCCCTTTGCCGCCACCCATGGCTTTACCATCCTTTACTGGCCTCATTCGTCCAGGATTTCCAGGAGCACCTCAGCCAACTCTAAGTCGTTTCACTTACCAACGCCCCACTGGAGCTATACTATCAGCTCCACCTAGTTTGCACCTTCGTGATCCACTTGATAATGCTGAACTTGTAAGTGGTCCAGCTGTAGCGAGCATTCCAACAAATCAACCAAATCCAAGTGGAACTACCATAGAAGCAAAGCCCCAACTGAAAAATTTGATCGGTGACGCAACACGTTTTGTCCCTACAGCTCTTANAGTACGTAGAATTGTTCGTGATACTAGTGGTCGTCTAATCACTACAGGTGGNGGCANCAGTGTATATG ]
[-] EMBL CD076191 [ CCTTTACTGGCCTCATTCGTCCAGGATTTCCAGGAGCACCTCAGCCAACTCTAAGTCGTTTCACTTACCAACGCCCCACTGGAGCTATACTATCAGCTCCACCTAGTTTGCACCTTCGTGATCCACTTGATAATGCTGAACTTGTAAGTGGTCCAGCTGTAGCGAGCATTCCAACAAATCAACCAAATCCAAGTGGAACTACCATAGAAGCAAAGCCCCAACTGAAAAATTTGATCGGTGACGCAACACGTTTTGTCCCTACAGCTCTTAAAGTACGTAGAATTGTTCGTGATACTAGTGGTCGTCTAATCACTACAGGTGGGGGCACAAGTGTATATGGAACAGCAAAACAACCGAATGCTGTTTATGATCGTGTTGCTAAATCTGATACTACAGGAATTAATTCTGGGTCAGCTACTAGCAAAGATGATGCATATGAAGAGTTTATGCGTGAAATGGAAGGCCTAATATAAGAACACTTTTCAGACTCCATGTATATTTTTATCTTATTTTGAAATCGTCTTTCATATATTGTATATTTTAATGTGTCTTTTTTTACGCATATCTATCTGAAGCAAACATTTTTCAT ]
[+] EMBL CD190616 [ GTAGCGAGCATTCCAACAAATCAACCAAATCCAAGTGGAACTACCATAGAAGCAAAGCCCCAACTGAAAAATTTGATCGGTGACGCAACACGTTTTGTCCCTACAGCTCTTAAAGTACGTAGAATTGTTCGTGATACTAGTGGTCGTCTAATCACTACAGGTGGGGGCACAAGTGTATATGGAACAGCAAAACAACCGAATGCTGTTTATGATCGTGTTGCTAAATCTGATACTACAGGAATTAATTCTGGGTCAGCTACTAGCAAAGATGATGCATATGAAGAGTTTATGCGTGAAATGGAA ]
[-] EMBL AI395556 [ tTACTAGCAAAGATGATGCATATGAAGAGTTTATGCGTGAAATGGAAGGCCTAATATAAGAACACTTTTCAGACTCCATGTATATTTTTATCTTATTTTGAAATCGTCTTTCATATATTGTATATTTTAATGTGTCTTTTTTTACGCATATCTATCTGAAGCAAACATTTTTCATTGAATCCACCTTAAATCCATTGTTTACATGTCTCAAATTATGAACACGTGTTTGCATCAAAAGTTCTCGATGGATACCATTTCTTAATGTAGAAAAAAAAAAAAAAA]
consensusID : consensus_11094#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 695 fasta sequence
[TCCTTTACTGGCCTCATTCGTCCAGGATTTCCAGGAGCACCTCAGCCAACTCTAAGTCGTTTCACTTACCAAAGACCCCCTACAATTATTGGAAGAAACGACTCTCTATGACAAACAAGAATACGATCCCAGTGTTCAAGCTCAACTCAGTGAAAGGGCCATTCAGGAAAAACGCCGAAAGCTGTTGGAAACATTCGACCGTCTTGTTATTCTATATAGGAAAGAAAATGCAGAATATGCCAACCGGCTTCAAGCGGCTCGTCAAGACTATGACAAAAGACGGCATGAAATGATGCTTTATTACGGTGAGCATTTATTCTTACTTTATGTCCACAGAACAAGTAAAGTTAGCTGAAAGAGTAAAAGCTAGTGAAATTCCGCTCCCAAAACTGCCACAATCACAAATGGGTCTTATAACGTCCGACATACCATTACCTCCTGGGGGTTACGCTAAAGGTATTCTGAAGAAATCGTTAGGAGCTCCAGGACTCCCACCTAGTATACTTCCTGCAGGTCGCANACCACCTGGACCACCTCCAGGAACACCTNCTGAATTGTCAGATAGCGAAGAAGAAGACAATTCTGTTGATAACACGACANAGCAACGCANAATCCGGTTCGCTGATGCAGATCCTATGCCAGAGCANGAAGAACTAATTGGTGATTCATCTCTGCACCTCGTTGAGAAATTCACC]
[+] EMBL CD092185 [TCCTTTACTGGCCTCATTCGTCCAGGATTTCCAGGAGCACCTCAGCCAACTCTAAGTCGTTTCACTTACCAAAGACCCCCTACAATTATTGGAAGAAACGACTCTCTATGACAAACAAGAATACGATCCCAGTGTTCAAGCTCAACTCAGTGAAAGGGCCATTCAGGAAAAACGCCGAAAGCTGTTGGAAACATTCGACCGTCTTGTTATTCTATATAGGAAAGAAAATGCAGAATATGCCAACCGGCTTCAAGCGGCTCGTCAAGACTATGACAAAAGACGGCATGAAATGATGCTTTATTACGGTGAGCATTTATTCTTACTTTATGTCCACAGAACAAGTAAAGTTAGCTGAAAGAGTAAAAGCTAGTGAAATTCCGCTCCCAAAACTGCCACAATCACAAATGGGTCTTATAACGTCCGACATACCATTACCTCCTGGGGGTTACGCTAAAGGTATTCTGAAGAAATCGTTAGGAGCTCCAGGACTCCCACCTAGTATACTTCCTGCAGGTCGCANACCACCTGGACCACCTCCAGGAACACCTNCTGAATTGTCAGATAGCGAAGAAGAAGACAATTCTGTTGATAACACGACANAGCAACGCANAATCCGGTTCGCTGATGCAGATCCTATGCCAGAGCANGAAGAACTAATTGGTGATTCATCTCTGCACCTCGTTGAGAAATTCACC]
[-] EMBL CD098405 [ CCTACAATTATTGGAAGAAACGACTCTCTATGACAAACAAGAATACGATCCCAGTGTTCAAGCTCAACTCAGTGAAAGGGTCATTCAGGAAAAACGCCGAAAGCTGTTGGAAACATTCGACCGTCTTGTTATTCTATATAGGAAAGAAAATGCAGAATATGCCAACCGGCTTCAAGCGGCTCGTCAAGACTATGACAAAAGACGGCATGAAATGATGCTTTATTACGGTGAGCATTTATTCTTACTTTATGTCCACAGAACAAGTAAAGTTAGCTGAAAGAGTAAAAGCTAGTGAAATTCCGCTCCCAAAACTGCCACAATCACAAATGGGTCTTATAACGTCCGACATACCATTACCTCCTGGGGGTTACGCTAAAGGTATTCTGAAGAAATCGTTAGGAGCTCCA ]
[+] EMBL CD190551 [ TATTACGGAGAGCATTTATTCTTACTTTATGTCCACAGAACAAGTAAAGTTAGCTGAAAGAGTAAAAGCTAGTGAAATTCCGCTCCCAAAACTGCCACATTCACAAATGGGTCTTATAACGTCCGACATACCATTACCTCCTGGGGGTTACGCTAAAGGTATTCTGAAGAAATCGTTAGGAGCTCCAGGACTCCCACCTAGTATACTTCCTGCAGGTCGCAAACCACCTGGACCACCTCCAG ]
consensusID : consensus_11094#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 440 fasta sequence
[ACAGNATCCCCGACCACTTNGAAACCGTAAGACAATTCTGTTGATAACACGACAAAGCAACGCAAAATCCGGTTCGCTGATGCAGATCCTATGCCAGAGCAAGAAGAACTAATTGGTGATTCATCTCTGCACCTCGGTGAGAAATT-CACCGGTGGATTTACAACTATTACTCCTC-CGCTTTCTCAAATCCCT-TTGCCGCCAC-CCAT-G-GCTTTACCATCCTTTACTGGCCTCATTCGTCCAGGATTTCCAGGAGCACCTCAGCCAACTCTAAGTCGTTTCACTTACCAACGCCCCACTGGAGCTATACTATCAGCTCCACCTAGTTTGCACCTTCGTGATCCACTTGATAATGCTGAACTTGTAAGTGGTCCAGCTGTATCGAGCATTCCAACAAATCAACCAAATCCAAGTGGTCGTCTTACGGTTTCAAGTGGTCGGGT]
[+] EMBL CD085398 [ACAGNATCCCCGACCACTTNGAAACCGTAAGACAATTCTGTTGATAACACGACAAAGCAACGCAAAATCCGGTTCGCTGATGCAGATCCTATGCCAGAGCAAGAAGAACTAATTGGTGATTCATCTCTGCACCTCGGTGAGAAATT CACCGGTGGATTTACAACTATTACTCCTC CGCTTTCTCAAATCCCT TTGCCGCCAC CCAT G GCTTTACCATCCTTTACTGGCCTCATTCGTCCAGGATTTCCAGGAGCACCTCAGCCAACTCTAAGTCGTTTCACTTACCAACGCCCCACTGGAGCTATACTATCAGCTCCACCTAGTTTGCACCTTCGTGATCCACTTGATAATGCTGAACTTGTAAGTGGTCCAGCTGTATCGAGCATTCCAACAAATCAACCAAATCCAAGTGGTCGTCTTACGGTTTCAAGTGGTCGGGT]
[+] EMBL CD085417 [ AACCGTAAGACAATTCTGTTGATAACACGACAAAGCAACGCAAAATCCGGTTCGCTGATGCAGATCCTATGCCAGAGCAAGAAGAACTAATTGGTGATTCATCTCTGCACCTCGGTGAGAAATT CACCGGTGGATTTACAACTATTACTCCTC CGCTTTCTCAAATCCCT TTGCCGCCAC CCAT G GCTTTACCATCCTTTACTGGCCTCATTCGTCCAGGATTTCCAGGAGCACCTCAGCCAACTCTAAGTCGTTTCACTTACCAACGCCCCACTGGAGCTATACTATCAGCTCCACCTAGTTTGCACCTTCGTGATCCACTTGATAATGCTGAACTTGTAAGTGGCCCAGCTGTAGCGAGCATTCCAACAAATCAACCAAATCCAAGTGGTCGTCTTACGGTTTCAAGTGGTCGGGT]
[-] EMBL CD147706 [ AAATCCGGTTCGCTGATGCAGATCTTATGCCAGAGCAAGAAGAACTAATTGGTGATTCATCTGTGCACCTCGGTGAGAAATTGCACCGGTGGATTTACAACTATTACTCCTCACGCTTTCTCAAATCCCTATTGCCGCCACACCATAGCGCTTTACCAT ]
[-] EMBL CD147488 [ AGAGCAAGAAGAACTAATTGGTGATTCATCTCTGCACCTCGGTGAGAAATT CACCGGTGGATTTACAACTATTACTCCTC CGCTTTCTCAAATCCCT TTGCCGCCAC CCAT G GCTTTACCATCCTTTACTGGCCTCATTCGTCCAGGATTTCCAGGAGCACCTCAGCCAACTCTAAGTCGTTTCACTTACCAACGCCCCACTGGAGCTATACTATCAGCTCCACCTAGTTTGCACCTTCGTGATCCACTTGATAATGCTGA ]
consensusID : consensus_11094#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 322 fasta sequence
[TTTTTTTTTTTTTTTTGATCATATACAGACATATATTTGAATGTTTGTGTATGAGATGAACTAACTGTACTTCAAATAAACTGATTTGATAAATCTCACTGAGCAGACTATAATTCTACATTAAGAAATGGTATCCATCGAGAACTTTTGATGCAAACACGTGTTCATAATTTGAGACATGTAAACAATGGATTTAAGGTGGATTCAATGAAAAATGTTTGCTTCAGATAGATATGCGTAAAAAAAGACACATTAAAATATACAATATATGAAAGACATTTCAAAATAAGATAAAAATATACATGGAGTCTGAAAAGTGTTC]
[+] EMBL AI395705 [TTTTTTTTTTTTTTTTGATCATATACAGACATATATTTGAATGTTTGTGTATGAGATGAACTAACTGTACTTCAAATAAACTGATTTGATAAATCTCACTGAGCAGACTATAATTCTACATTAAGAAATGGTATCCATCGAGAACTTTTGATGCAAACACGTGTTCATAATTTGAGACATGTAAACAATGGATTTAAGGTGGATTCAATGAAAAATGTTTGCTTCAGATAGATATGCGTAAAAAAAGACACATTAAAATATACAATATATGAAAGACATTTCAAAATAAGATAAAAATATACATGGAGTCTGAAAAGTGTTC]
consensusID : consensus_11094#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 298 fasta sequence
[TTNNTTTTTTTTTTTAAAATATACAATATATGAAAGACGATTTCAAAATAAGATAAAAATATACATGGAGTCTGAAAAGTGTTCTTATATTAGGCCTTCCATTTCACGCATAAACTCTTCATATGCATCATCTTTGCTAGTAGCTGACCCAGAATTAATTCCTGTAGTATCAGATTTAGCAACACGATCATAAACAGCATTCGGTTGTTTTGCTGTTCCATATACACTTGTGCCCCCACCTGTAGTGATTAGACGACCACTAGTATCACGAACAATCTACGTACTTTAAGAGCTGTAN]
[+] EMBL AI395615 [TTNNTTTTTTTTTTTAAAATATACAATATATGAAAGACGATTTCAAAATAAGATAAAAATATACATGGAGTCTGAAAAGTGTTCTTATATTAGGCCTTCCATTTCACGCATAAACTCTTCATATGCATCATCTTTGCTAGTAGCTGACCCAGAATTAATTCCTGTAGTATCAGATTTAGCAACACGATCATAAACAGCATTCGGTTGTTTTGCTGTTCCATATACACTTGTGCCCCCACCTGTAGTGATTAGACGACCACTAGTATCACGAACAATCTACGTACTTTAAGAGCTGTAN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11094#0 ATAGGTCAGCAATATCGGCGGTCTTTCCGAAAAATCTGCAAATTGTCAAAAATGGGTCGT 60
consensus_11094#2 ------------------------------------------------------------
consensus_11094#1 ---------------------------GCAGGCCANAATTCGGCACGAGGGAAATCGTTA 33
consensus_11094#3 ------------------------------------------------------------
consensus_11094#5 ------------------------------------------------------------
consensus_11094#4 ------------------------------------------------------------
consensus_11094#0 CGTTCGGTGAATACTACTAAAAGTGGGAAGTTTATGAACCCAACAGACCAGGCAAGAAAA 120
consensus_11094#2 --------------------------------------------------TCCTTTACTG 10
consensus_11094#1 GGAGCTCCAGGACTCCCACCTAGTATACTTCCTGCAGGTCGCAAACCACCTGGACCACCT 93
consensus_11094#3 ------------------------------------------------------------
consensus_11094#5 ------------------------------------------------------------
consensus_11094#4 ------------------------------------------------------------
consensus_11094#0 GAAGCAAGAAAACGAGAACTGAAGAAAAACAAGAAACAACGCATGGCTGTGCGTTATGCG 180
consensus_11094#2 GCCTCATTCGTCCAGGATTTCCAGGAGCACCTCAGCCAACTCTAAGTCGTTT-------- 62
consensus_11094#1 CCAGGAACACCTCCTGAATTGTCAGATAGCGAAGAAGAAGACAATTCTGTTGAT------ 147
consensus_11094#3 ---ACAGNATC-CCCGACCACTTNGAAACCGTA-----AGACAATTCTGTTGAT------ 45
consensus_11094#5 ------------------------------------------------------------
consensus_11094#4 ------------------------------------------------------------
consensus_11094#0 GTGCTTAGGGCCAAAGACCCCCTACAATTATTGGAAGAAACGACTCTCTATGACAAA-CA 239
consensus_11094#2 -CACTTA---CCAAAGACCCCCTACAATTATTGGAAGAAACGACTCTCTATGACAAA-CA 117
consensus_11094#1 ---AACACGACAAAGCAACGCAAAATCCGGTTCGCTGATGCAGATC-CTATGCCAGAGCA 203
consensus_11094#3 ---AACACGACAAAGCAACGCAAAATCCGGTTCGCTGATGCAGATC-CTATGCCAGAGCA 101
consensus_11094#5 ---------------------------------------TTNNTTTTTTTTTTTAAA--A 19
consensus_11094#4 ---------------------------------------TTTTTTTTTTTTTTTTGATCA 21
* * * * *
consensus_11094#0 AGAATA-CGATCCCAGTGTTCAAGCTC---AACTCAGTGAAAGGGTCATTCAGGAAAAAC 295
consensus_11094#2 AGAATA-CGATCCCAGTGTTCAAGCTC---AACTCAGTGAAAGGGCCATTCAGGAAAAAC 173
consensus_11094#1 AGAAGA-ACTAATTGGTGATTCATCTCTGCACCTCGGTGAGAAATTCACCGGTGGA---- 258
consensus_11094#3 AGAAGA-ACTAATTGGTGATTCATCTCTGCACCTCGGTGAGAAATTCACCGGTGGA---- 156
consensus_11094#5 TATACA-ATATATGAAAGA-CGATTTCA--AAATAAGATAAAAATATACATGGAGT---- 71
consensus_11094#4 TATACAGACATATATTTGAATGTTTGTGTATGAGATGAACTAACTGTACTTCAAAT---- 77
* * * * * *
consensus_11094#0 GCCGAAAGCTGTTGGAAACATTCGACCGTCTTGTTATTCTATATAGGAAAGAAAATGCAG 355
consensus_11094#2 GCCGAAAGCTGTTGGAAACATTCGACCGTCTTGTTATTCTATATAGGAAAGAAAATGCAG 233
consensus_11094#1 -TTTACAACTATT---ACTCCTCCGCTTTCTCAAATCCCTTTGCCGCCACCCATGGCTTT 314
consensus_11094#3 -TTTACAACTATT---ACTCCTCCGCTTTCTCAAATCCCTTTGCCGCCACCCATGGCTTT 212
consensus_11094#5 -CTGAAAAGTGTTCTTA-TATTAGGCCTTCC--ATTTCACGCATAAAC-TCTTCATATGC 126
consensus_11094#4 -----AAACTGATT----TGATAAATCTCACTGAGCAGAC-TATAATTCTACATTAAGAA 127
* * * *
consensus_11094#0 AATATGCCA-ACCGGCTTCAAGCGGCTCGTCAAGACTA---TGACAAAAGACGGCATGAA 411
consensus_11094#2 AATATGCCA-ACCGGCTTCAAGCGGCTCGTCAAGACTA---TGACAAAAGACGGCATGAA 289
consensus_11094#1 ACCATCCTTTACTGGCCTCA-----TTCGTCCAGGATT---TCCAGGAGCACCTCAGCCA 366
consensus_11094#3 ACCATCCTTTACTGGCCTCA-----TTCGTCCAGGATT---TCCAGGAGCACCTCAGCCA 264
consensus_11094#5 ATCATCTTT-GCTAGTAGC-------TGACCCAGAATTAATTCCTGTAGTATCAGATTTA 178
consensus_11094#4 ATGGTATCCATCGAGAACTT-----TTGATGCAAACACGTGTTC-ATAATTTGAGACATG 181
* * * * * * * * *
consensus_11094#0 ATGATGCTTTATTACG-------------------------------AACAAGTAAAGTT 440
consensus_11094#2 ATGATGCTTTATTACGGTGAGCATTTATTCTTACTTTATGTCCACAGAACAAGTAAAGTT 349
consensus_11094#1 ACTCTAAGTCGTTTCA-------------CTTACCAACGCCCCACTGGAGCTATACTATC 413
consensus_11094#3 ACTCTAAGTCGTTTCA-------------CTTACCAACGCCCCACTGGAGCTATACTATC 311
consensus_11094#5 GCAACACG--ATCATA------------------------------AACAGCATTCGGTT 206
consensus_11094#4 TAAACAATGGATTTAAG---------------------GTGGATTCAATGAAAAATGTTT 220
* *
consensus_11094#0 AGCTGAA---AGAGTAAAAGCTAGTGAAATTCCGCTCCCAAAACTGCCACAATCACAAAT 497
consensus_11094#2 AGCTGAA---AGAGTAAAAGCTAGTGAAATTCCGCTCCCAAAACTGCCACAATCACAAAT 406
consensus_11094#1 AGCTCCACCTAGTTTGCACCTTCGTGA---TCCACT--TGATAATGCTGAACTTGTAAGT 468
consensus_11094#3 AGCTCCACCTAGTTTGCACCTTCGTGA---TCCACT--TGATAATGCTGAACTTGTAAGT 366
consensus_11094#5 GTTTTGCTGTTCCATATACACTTGTGC--CCCCAC-----------CTGTAGTGATTAGA 253
consensus_11094#4 GCTTCAG----ATAGATATGCGTAAAAAAAGACACATTAAAATATACAATATATGAAAGA 276
* * * * * * *
consensus_11094#0 GGGTC--TTATAACG-----TCCGACATACCA-TTACCTCCTGGGGGTTACGCTAAAGGT 549
consensus_11094#2 GGGTC--TTATAACG-----TCCGACATACCA-TTACCTCCTGGGGGTTACGCTAAAGGT 458
consensus_11094#1 GGTCCAGCTGTAGCGAGCATTCCAACAAATCAACCAAATCCAAGTGGAACTACCATAGAA 528
consensus_11094#3 GGTCCAGCTGTATCGAGCATTCCAACAAATCAACCAAATCCAAGTGGTCGTCTTACGGTT 426
consensus_11094#5 CGACCACTAGTATCA------CGAACAATCTA--CGTACTTTAAGAGCTGTAN------- 298
consensus_11094#4 CATTTCAAAATAAGA-------TAAAAATATACATGGAGTCTGAAAAGTGTTC------- 322
** * * *
consensus_11094#0 ATTCTGAAGAAATCGTTAGGAGCTCCAGGACTCCCACCTAGTATACTTCCTGCAGGTCGC 609
consensus_11094#2 ATTCTGAAGAAATCGTTAGGAGCTCCAGGACTCCCACCTAGTATACTTCCTGCAGGTCGC 518
consensus_11094#1 GCAAAGCCCCAACTGAAAAATTTGATCGGTGACGCAACACGTTTTGTCCCTACAGCTCTT 588
consensus_11094#3 TCAAGTGGTCGGGT---------------------------------------------- 440
consensus_11094#5 ------------------------------------------------------------
consensus_11094#4 ------------------------------------------------------------
consensus_11094#0 AAACCACCTGGACCACCTCCAGGAACACCTCCTGAATTGTCAGATAGCGAAGAAGAAGAC 669
consensus_11094#2 ANACCACCTGGACCACCTCCAGGAACACCTNCTGAATTGTCAGATAGCGAAGAAGAAGAC 578
consensus_11094#1 AAAGTACGTAGAATTGTTCGTGATA---CTAGTGGTCGTCTAATCACTACAGGTGGGGGC 645
consensus_11094#3 ------------------------------------------------------------
consensus_11094#5 ------------------------------------------------------------
consensus_11094#4 ------------------------------------------------------------
consensus_11094#0 AATTCTGTTGATAACACGACAAAGCAACGCAAAATCCGGTTCGCTGATGCAGATCCTATG 729
consensus_11094#2 AATTCTGTTGATAACACGACANAGCAACGCANAATCCGGTTCGCTGATGCAGATCCTATG 638
consensus_11094#1 ACAAGTGTATATGGAACAGCAAAACAAC--CGAATGCTGTTTATGATCGTGTTGCTAAAT 703
consensus_11094#3 ------------------------------------------------------------
consensus_11094#5 ------------------------------------------------------------
consensus_11094#4 ------------------------------------------------------------
consensus_11094#0 CCAGAGCAAGAAGAACTAATTGGTGATTCATCTCTGCACCTCGGTGAGAAATTCACCGGT 789
consensus_11094#2 CCAGAGCANGAAGAACTAATTGGTGATTCATCTCTGCACCTCGTTGAGAAATTCACC--- 695
consensus_11094#1 CTGATACTACAGGAATTAATTCTGGGTCAGCTACTAGCAAAGATGATGCATATGAAGAGT 763
consensus_11094#3 ------------------------------------------------------------
consensus_11094#5 ------------------------------------------------------------
consensus_11094#4 ------------------------------------------------------------
consensus_11094#0 GGATTTACAACTATTACTCCTCCGCTTTCTCAAATCCCTTTGCCGCCACCCATGGCTTTA 849
consensus_11094#2 ------------------------------------------------------------
consensus_11094#1 TTATGCGTGAAATGGAAGGCCTAATATAAGAACACTTTTCAGACTCCATGTATATTTTTA 823
consensus_11094#3 ------------------------------------------------------------
consensus_11094#5 ------------------------------------------------------------
consensus_11094#4 ------------------------------------------------------------
consensus_11094#0 CCATCCTTTACTGGCCTCATTCCGTACCAGGATATTCCATGGAGCACACTCAGTCCAACT 909
consensus_11094#2 ------------------------------------------------------------
consensus_11094#1 TCTTATTTTGAAATCGTCTTTCATATATTGTATATTTTAATGTGTCTTTTTTTACGCATA 883
consensus_11094#3 ------------------------------------------------------------
consensus_11094#5 ------------------------------------------------------------
consensus_11094#4 ------------------------------------------------------------
consensus_11094#0 CTTAAGTTCGTTTTCACTTGACACAACAGCCCACACTGTGGAGCTACTACATAGTCATGC 969
consensus_11094#2 ------------------------------------------------------------
consensus_11094#1 TCTATCTGAAGCAAACATTTTTCATTGAATCCACCTTAAATCCATTGTTTACATGTCTCA 943
consensus_11094#3 ------------------------------------------------------------
consensus_11094#5 ------------------------------------------------------------
consensus_11094#4 ------------------------------------------------------------
consensus_11094#0 TCTCACCGTAGATTTGCACCTTACGTGATACCACATTGATAATGTCTGAAC--------- 1020
consensus_11094#2 ------------------------------------------------------------
consensus_11094#1 AATTATGAACACGTGTTTGCATCAAAAGTTCTCGATGGATACCATTTCTTAATGTAGAAA 1003
consensus_11094#3 ------------------------------------------------------------
consensus_11094#5 ------------------------------------------------------------
consensus_11094#4 ------------------------------------------------------------
consensus_11094#0 ------------
consensus_11094#2 ------------
consensus_11094#1 AAAAAAAAAAAA 1015
consensus_11094#3 ------------
consensus_11094#5 ------------
consensus_11094#4 ------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||