These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11096#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 31 consensus length = 442 fasta sequence [GGGATTCGATTTAATAAACAGGCACGTTCTCGTGTGGACCAGTTGCAGATCACCAGCTGCTCACATGCTAGTGAATTAACCACCGAAACCGTACAAAGTACGACCTTGGCGTTTCAAAGCGTACACAACGTCCATAGCTGTCACTGTCTTCCTCTTG-GCATGTTCCGTGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT-CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCC-TTTACCACCTTTACCACGACCAGACATGATTCACAAAGATAGGTAAGCTGACTTGCAGACCGACACGAGACGAGGAAGCCAG] [+] EMBL CD115947 [GGGATTCGATTTAATAAACAGGCACGTTCTCGTGTGGACCAGTTGCAGATCACCAGCTGCTCACATGCTAGTGAATTAACCACCGAAACCGTACAAAGTACGACCTTGGCGTTTCAAAGCGTACACAACGTCCATAGCTGTCACTGTCTTCCTCTTG GCATGTTCCGTGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCA ] [+] EMBL CD115637 [ GTGTGGACCAGTTGCAGATCACCAGCTGCTCACATGCTAGTGAATTAACCACCGAAACCGTACAAAGTACGACCTTGGCGTTTCAAAGCGTACACAACGTGGGTGGGGGGCACTGTCTTCCTCTTG GCATGTTCCGTGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCTAAACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCC ATCC TTTACCA ] [-] EMBL CD148166 [ TGTGGACCAGTTGCAGATCACCAGCTGCTCACATGCTAGTGAATTAACCACCGAAACCGTACAAAGTACGACCTTGGCGTTTCAAAGCGTACACAACGTCCATAGCTGTCACTGTCTTCCTCTTG GCATGTTCCGTGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGT ] [-] EMBL CD154526 [ ACCAGCTGCTCACATGCTAGTGAATTAACCACCANAACCGTACAAAGTACGACCTTGGCGTTTCAAAGCGTACACAACGTCCATAGCTGTCACTGTCTTCCTCTTG GCATGCTCCGTGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGT ] [+] EMBL BG931861 [ gTCACATGCTAGTGAATTAACCACCGAAACCGTACAAAGTACGACCTTGGCGTTTCAAAGCGTACACAACGTCCATAGCTGTCACTGTCTTCCTCTTG GCATGTTCCGTGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCC TTTACCACCTTTACCACGA ] [+] EMBL CD162948 [ TGCTAGTGAATTAACCACCGAAACCGTACAAAGTACGACCTTGGCGTTTCAAAGCGTACACAACGTCCATAGCTGTCACTGTCTTCCTCTTG GCATGTTCCGTGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCC TTTACCACCTTTACCACGACCAGACATGATTCACAAAGATAGGTAAGCTGACTTGCAGACCG ] [-] EMBL CD163344 [ GAATTAACCACCGAAACCGTACAAAGTACGACCTTGGCGTTTCAAAGCGTACACAACGTCCATAGCTGTCACTGTCTTCCTCTTG GCATGTTCCGTGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCC TTTACCACCTCTACCACGACCAGACATGATTCACAAAGATAGGTAA ] [+] EMBL CD097481 [ GCGTACACAACGTCCATAGCTGTCACTGTCTTCCTCTTG GCATGTTCCGTGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACC ] [-] EMBL CD148058 [ CGTACACAACGTCCATAGCTGTCACTGTCTTCCTCTTG GCATGTTCCGTGTAGGTGACTGCATCACGGATCGCGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCATCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCCACGGGCCACCTCAATCACGACCAGACATGATTCACAAAGATAGGTAAGCTGACTTGCAGACCGACACG ] [+] EMBL CD112426 [ CCTCTTGTGCATGTTCCGTGTAGGTAACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCC ] [-] EMBL CD153702 [ CCGTGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGTACACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCC TTTACCACCTTTACCACGACCAGACATGATTCACAAAGATAGGTAAGCTGACTTGCAGACCGACACGAGACGAGGAAGCCAG] [-] EMBL CD153718 [ CCGTGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCC TTTACCACCTTTACCACGACCAGACATGATTCACAAAGACAGGCAAGCTGACTTGCAGACCGA ] [-] EMBL CD153716 [ CCGTGTAGGTAACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCC TTTACCACCTTTACCACGACCAGACATGATTCACAAAGA ] [-] EMBL CD153707 [ CCGTGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGa ] [-] EMBL CD153693 [ CCGTGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCC TTTACCACCTTTACCACGACCAGACATGATTCACAAAGA ] [-] EMBL CD125691 [ CGTGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGTTCCTCCTTTACCCAATCC TTTACCCCCTTTACCACGTCCAGACATGATTCACAAAGATAGGTGAGCTGACTTG ] [+] EMBL CD148207 [ TGTAGGAGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCC TTTACCACCTTTACCACGACCAGACATGATTCACAAAGATAGGTAAGCTGACTTGCAGACCGACAC ] [+] EMBL CD125671 [ TGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCC TTTACCACCTTTACCACGAGCGGACGTGATTCATCAAGACAGGCGAGCTGACTTGCAGACCGACA ] [+] EMBL CD147988 [ TGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCC TTTACCACCTTTACCACGACCAGACATGATTCACTAAGATAGGTAAGCTGACTTGCAGACCGACA ] [+] EMBL CD125656 [ TGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTT CCCAATCC TTTAC ] [+] EMBL CD125602 [ TGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCC TTT ] [+] EMBL CD125695 [ TGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCC TTT ] [+] EMBL CD125598 [ TGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTGGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCC TTT ] [+] EMBL CD125639 [ TGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACTTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCC TTT ] [-] EMBL CD125659 [ GTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCC TTTA ] [+] EMBL CD125665 [ cGTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCC TTT ] [-] EMBL CD125676 [ GTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCCCCTTTACCCAATCC TTTA ] [-] EMBL CD125699 [ GTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACGGCGCCTCTACGAGTCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCC TTTg ] [-] EMBL CD125601 [ GTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCC TTTA ] [-] EMBL CD125651 [ GTAGGTGACTGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCC TTTA ] [-] EMBL CD093233 [ AGAAACACCTTCAGTACACCACGAGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGT CACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCC TTTACCACCTTTACCACGACCAGACATGACTCACAAAGATAGGCAAGCTGACTTGCAGACCGACACGAG ] consensusID : consensus_11096#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 365 fasta sequence [TTGAATAACCACCGAAACCGTACAAAGTTACGACCTTGGCGTTTCAAAGCGGTACAACAACGTCCATAGCTGTCACTGTCTTCCTCGTGGCATGTTCCGTGTAGGTGACTGCATCACGGATCACGTTCTCCAGAGACACCTTCAGTACACCACGAGGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGTCACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCCTGGACCACCTCTATCACGACCAGACATGATTCACAAAGATAGGTAAGCTGAATTGACAGATCACCAGCTGCT] [-] EMBL CD163130 [TTGAATAACCACCGAAACCGTACAAAGTTACGACCTTGGCGTTTCAAAGCGGTACAACAACGTCCATAGCTGTCACTGTCTTCCTCGTGGCATGTTCCGTGTAGGTGACTGCATCACGGATCACGTTCTCCAGAGACACCTTCAGTACACCACGAGGTCTCCTCGTAGATCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGGTGATACCCTGGATGTTGTCACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCAATCCTGGACCACCTCTATCACGACCAGACATGATTCACAAAGATAGGTAAGCTGAATTGACAGATCACCAGCTGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11096#0 GGGATTCGATTTAATAAACAGGCACGTTCTCGTGTGGACCAGTTGCAGATCACCAGCTGC 60 consensus_11096#1 ------------------------------------------------------------ consensus_11096#0 TCACATGCTAGTGAATTAACCACCGAAACCGTACAAAGT-ACGACCTTGGCGTTTCAAAG 119 consensus_11096#1 -----------TTGAATAACCACCGAAACCGTACAAAGTTACGACCTTGGCGTTTCAAAG 49 * * *********************** ******************** consensus_11096#0 CG-TACA-CAACGTCCATAGCTGTCACTGTCTTCCTCTTGGCATGTTCCGTGTAGGTGAC 177 consensus_11096#1 CGGTACAACAACGTCCATAGCTGTCACTGTCTTCCTCGTGGCATGTTCCGTGTAGGTGAC 109 ** **** ***************************** ********************** consensus_11096#0 TGCATCACGGATCACGTTCTCCAGAAACACCTTCAGTACACCACGAG-TCTCCTCGTAGA 236 consensus_11096#1 TGCATCACGGATCACGTTCTCCAGAGACACCTTCAGTACACCACGAGGTCTCCTCGTAGA 169 ************************* ********************* ************ consensus_11096#0 TCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGG 296 consensus_11096#1 TCAATCCTGAAATGCGCTTCACACCACCTCGACGAGCCAGACGACGGATTGCAGGCTTGG 229 ************************************************************ consensus_11096#0 TGATACCCTGGATGTTGTCACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCA 356 consensus_11096#1 TGATACCCTGGATGTTGTCACGTAAGACCTTGCGATGTCTCTTAGCTCCTCCTTTACCCA 289 ************************************************************ consensus_11096#0 ATCCTTTACCACCTTTACCACGACCAGACATGATTCACAAAGATAGGTAAGCTGACTTG- 415 consensus_11096#1 ATCCTGGACCACCTCTATCACGACCAGACATGATTCACAAAGATAGGTAAGCTGAATTGA 349 ***** ******* ** ************************************* *** consensus_11096#0 CAGACCGACACGAGACGAGGAAGCCAG 442 consensus_11096#1 CAGATCACCAGCTGCT----------- 365 **** * ** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||