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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11107#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 22 consensus length = 650 fasta sequence
[CAAGTTATCTGAAGGCTGTTCAAGAAGCATTTGTCTTACAGATAAACAGAATGATCTTGAAAAACTTATCTAAACGGCAAAAGCTGATCTTATCGATTCTTGTAATCGGTGCTATATGTGCATCGGTCGTATCAACAATATTTCTCGTACGCCATCTGAAATCCAATACCAACAAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTGAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAA-GAACTGTCTCC-AGCTACA--AAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATG-AAGTAAAGGAGCCTGTTAAAGGTG-TGTCTNATCTACCCAATCAATTTGCTTGCTTGGATTACTTGGCTTCTTCATGT]
[+] EMBL CD162946 [CAAGTTATCTGAAGGCTGTTCAAGAAGCATTTGTCTTACAGATAAACAGGATGATCTTGAAAAACTTATCTAAACGGCAAAAGCTGATCTTATCGATTCTTGTAATCGGTGCTATATGTGCATCGGTCGTATCAACAATATTTCTCGTACGCCATCTGAAATCCAATACCAACAAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTGAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAA GAACTGTCTCC AGCTACA AAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAAGTAAA GAGCCTGTTAAAGAAC TGTCTN ]
[+] EMBL CD160242 [ GCA TTGTCTTACAGATAAACAGAATGATCTTGAAAAACTTATCTAAACGGCAAAAGCTGATCTTATCGATTCTTGTAATCGGTGCTATATGTGCATCGGTCGTATCAACAATATTTCTCGTACGCCATCTGAAATCCAATACCAACAAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTGAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCtc ]
[+] EMBL CD160173 [ GCATTTGTCTTACAGATAAACAGAATGATCTTGAAAAACTTATCTAAACGGCAAAAGCTGATCTTATCGATTCTTGTAATCGGTGCTATATGTGCATCGGTCGTATCAACAATATTTCTCGTACGCCATCTGAAATCCAATACCAACAAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTGAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAATACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTATGGGCGCGACTGTTCTAATCTATGAAGTAga ]
[+] EMBL CD160015 [ GCATTTGTCTTACAGATAAACAGAATGATCTTGAAAAACTTATCTAAACGGCAAAAGCTGATCTTATCGATTCTTGTAATCGGTGCTATATGTGCATCGGTCGTATCAACAATATTTCTCGTACGCCATCTGAAATCCAATACCAACAAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTGAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAGAGAACTGTCTCCAGCTACAAGAACACCTGTTCTAATCAATGAAGTATAAGAGCCTGTTAAAGAACTGTCTCCAACTACAGCCGGACCTGTTCTAATCAAT ]
[+] EMBL CD160187 [ GCATTTGTCTTACAGATAAACAGAATGATCTTGAAAAACTTATCTAAACGGCAAAAGCTGATCTTATCGATTCTTGTAATCGGTGCTATATGTGCATCGGTCGTATCAACAATATTTCTCGTACGCCATCTGAAATCCAATACCAACAAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTGAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTATAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCtc ]
[+] EMBL CD160026 [ GCATTTGTCTTACAGATAAACAGAATGATCTTGAAAAACTTATCTAAACGGCAAAAGCTGATCTTATCGATTCTTGTAATCGGTGCTATATGTGCATCGGTCGTATCAACAATATTTCTCGTACGCCATCTGAAATCCAATACCAACAAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCCGTTGAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAGAAGAGCCTGTTAAAGAACCGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCtc ]
[+] EMBL CD116723 [ ATTTCTCGTACGCCATCTGAAATCCAATACCAACAAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTGAAGAACTGCCTCCAGCTACAAAACCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAA GAACTGTCTCC AGCTACA AAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATG AAGTAAAGGAGCCTGTTAAAGGTG ]
[-] EMBL CD165398 [ aCAATGCCAACAAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTGAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAA GAACTGTCTCC AGCTACA AAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCA ]
[+] EMBL CD165445 [ TACCAACAAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTGAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAA GAACTGTCTCC AGCTACA AAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATC ]
[+] EMBL CD161449 [ GTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTGAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAA GAACTGTCTCC AGCTACA AAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTG ]
[+] EMBL CD161466 [ GTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTGAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAA GAACTGTCTCC AGCTACA AAAACACCTG ]
[+] EMBL CD161453 [ GTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCCGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACAGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAA GAACTGTCTCC AGCTACA AAAACACCTG ]
[+] EMBL CD161573 [ GTTCTAATCAATGAAGTAAAAGGGCCTGTTGAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAA GAACTGTCTCC AGCTACA AAAACACCTG ]
[+] EMBL CD161646 [ GTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTCCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTGAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAA GAACTGTCTCC AGCTACA AAAACACCTG ]
[-] EMBL CD161589 [ TTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAA GAACTGTCTCC AGCTACA AAAACACCTGT ]
[+] EMBL CD161599 [ gcTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTGAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAA GAACTGTCTCC AGCTACA AAAACACCTG ]
[+] EMBL CD157072 [ ATGAAGTAAAAGAGCCTGTTGAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGACGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAA GAACTG ]
[-] EMBL CD123330 [ ACTGTTTCCACCTACAACAGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAACAGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAA GAACTGTCTCC ACCTACA ACAGCACCTGT ]
[-] EMBL CD161442 [ GAGCCTGTTATAGGATTGTTTCCACCTTCAACAGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAACAGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAA GAACTGTCTCC AGCTACA AAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGT ]
[-] EMBL CD161487 [ tatacCCTTCAGCCGCACCTGTTATAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACGTACAGCCGCACCTGTTATAATCAATGAAGTAAAAGAGCCTGTTAAAGGAACTGTCTCCTAGCTACAATAAAACACCTGTTATAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGT ]
[-] EMBL CD123350 [ tttacCCTTCAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAGCACCTGTTCTAGTCAATGAAGTAGAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAA GAACTGTCACC AGCTACA AAAACACCTGT ]
[+] EMBL CD159568 [ AAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAA GAACTGTCTCC AGCTACA AAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATG AAGTAAAAGAGCCTGTTAAAGGTGTTGT TGATCTACCCAATCAATTTGCTTGCTTGGATTACTTGGCTTCTTCATGT]
consensusID : consensus_11107#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 499 fasta sequence
[TTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGGTGTTGTTGATCTACCCAATCAATTTGCTTGCTTGGATTACTTGGCTTCTTCATGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGGGTAAACAGATGAGAGTTAATTGAATTCCCGTGGAC]
[-] EMBL CD123328 [TTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGGTGTTGTTGATCTACCCAATCAATTTGCTTGCTTGGATTACTTGGCTTCTTCATGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGT ]
[+] EMBL CD161509 [ GTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGGGTAAACAGATGAGAGTTAATTGAATTCCCGTGGAC]
[+] EMBL CD161494 [ GTTCTAATCAATGAAGGAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGGACCTGCTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTG ]
[+] EMBL CD123379 [ GTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTG ]
[+] EMBL CD161551 [ GTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCGCCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTG ]
[+] EMBL CD123255 [ GTTCTAATCAATGAAGTAAAAGAGCCTGTTGAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAGAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTG ]
[+] EMBL CD123342 [ GTCCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTG ]
[+] EMBL CD161548 [ GTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGGAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTG ]
[+] EMBL CD161489 [ GTTCTAATCTATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGACGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAAACACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTG ]
[+] EMBL CD123215 [ GAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAGAACACCTGTTCTAATCAATGAAGTAAGAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTG ]
consensusID : consensus_11107#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 212 fasta sequence
[NNNGNTNNGTNTACCCTTCAGCCGCNACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGT]
[-] EMBL CD123343 [NNNGNTNNGTNTACCCTTCAGCCGCNACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11107#0 CAAGTTATCTGAAGGCTGTTCAAGAAGCATTTGTCTTACAGATAAACAGAATGATCTTGA 60
consensus_11107#2 ------------------------------------------------------------
consensus_11107#1 ------------------------------------------------------------
consensus_11107#0 AAAACTTATCTAAACGGCAAAAGCTGATCTTATCGATTCTTGTAATCGGTGCTATATGTG 120
consensus_11107#2 ------------------------------------------------------------
consensus_11107#1 ------------------------------------------------------------
consensus_11107#0 CATCGGTCGTATCAACAATATTTCTCGTACGCCATCTGAAATCCAATACCAACAAACTGT 180
consensus_11107#2 ------------------------------------------------------------
consensus_11107#1 ---------------------TTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGT 39
consensus_11107#0 CTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTGAAGAACTGT 240
consensus_11107#2 --------------------------------------------------NNNGNTNNGT 10
consensus_11107#1 CTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGT 99
* **
consensus_11107#0 CTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGA-ACTG 299
consensus_11107#2 NTACCCTTCAGCCGCNACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGA-ACTG 69
consensus_11107#1 CTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGGTGTTG 159
* * * ************************************** **
consensus_11107#0 TC--TCCACCTA------------------------CAGCCGCACC-TGTTCTAATCAAT 332
consensus_11107#2 TC--TCCAGCTA------------------------CAAAAACACC-TGTTCTAATCAAT 102
consensus_11107#1 TTGATCTACCCAATCAATTTGCTTGCTTGGATTACTTGGCTTCTTCATGTTCTAATCAAT 219
* ** * * * * * *************
consensus_11107#0 GAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAAT 392
consensus_11107#2 GAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAAT 162
consensus_11107#1 GAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAAT 279
************************************************************
consensus_11107#0 GAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAAT 452
consensus_11107#2 GAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGT---------- 212
consensus_11107#1 GAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAAT 339
**************************************************
consensus_11107#0 GAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAAT 512
consensus_11107#2 ------------------------------------------------------------
consensus_11107#1 GAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAAT 399
consensus_11107#0 GAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAAT 572
consensus_11107#2 ------------------------------------------------------------
consensus_11107#1 GAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAAT 459
consensus_11107#0 GAAGTAAAGGAGCCTGTTAAAGGTGTGTCTNATCTACCCAATCAATTTGCTTGCTTGGAT 632
consensus_11107#2 ------------------------------------------------------------
consensus_11107#1 GAAG---GGTAAACAGATGAGAGTTAATTGAATTCCCGTGGAC----------------- 499
consensus_11107#0 TACTTGGCTTCTTCATGT 650
consensus_11107#2 ------------------
consensus_11107#1 ------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||