These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11107#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 22 consensus length = 650 fasta sequence [CAAGTTATCTGAAGGCTGTTCAAGAAGCATTTGTCTTACAGATAAACAGAATGATCTTGAAAAACTTATCTAAACGGCAAAAGCTGATCTTATCGATTCTTGTAATCGGTGCTATATGTGCATCGGTCGTATCAACAATATTTCTCGTACGCCATCTGAAATCCAATACCAACAAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTGAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAA-GAACTGTCTCC-AGCTACA--AAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATG-AAGTAAAGGAGCCTGTTAAAGGTG-TGTCTNATCTACCCAATCAATTTGCTTGCTTGGATTACTTGGCTTCTTCATGT] [+] EMBL CD162946 [CAAGTTATCTGAAGGCTGTTCAAGAAGCATTTGTCTTACAGATAAACAGGATGATCTTGAAAAACTTATCTAAACGGCAAAAGCTGATCTTATCGATTCTTGTAATCGGTGCTATATGTGCATCGGTCGTATCAACAATATTTCTCGTACGCCATCTGAAATCCAATACCAACAAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTGAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAA GAACTGTCTCC AGCTACA AAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAAGTAAA GAGCCTGTTAAAGAAC TGTCTN ] [+] EMBL CD160242 [ GCA TTGTCTTACAGATAAACAGAATGATCTTGAAAAACTTATCTAAACGGCAAAAGCTGATCTTATCGATTCTTGTAATCGGTGCTATATGTGCATCGGTCGTATCAACAATATTTCTCGTACGCCATCTGAAATCCAATACCAACAAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTGAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCtc ] [+] EMBL CD160173 [ GCATTTGTCTTACAGATAAACAGAATGATCTTGAAAAACTTATCTAAACGGCAAAAGCTGATCTTATCGATTCTTGTAATCGGTGCTATATGTGCATCGGTCGTATCAACAATATTTCTCGTACGCCATCTGAAATCCAATACCAACAAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTGAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAATACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTATGGGCGCGACTGTTCTAATCTATGAAGTAga ] [+] EMBL CD160015 [ GCATTTGTCTTACAGATAAACAGAATGATCTTGAAAAACTTATCTAAACGGCAAAAGCTGATCTTATCGATTCTTGTAATCGGTGCTATATGTGCATCGGTCGTATCAACAATATTTCTCGTACGCCATCTGAAATCCAATACCAACAAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTGAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAGAGAACTGTCTCCAGCTACAAGAACACCTGTTCTAATCAATGAAGTATAAGAGCCTGTTAAAGAACTGTCTCCAACTACAGCCGGACCTGTTCTAATCAAT ] [+] EMBL CD160187 [ GCATTTGTCTTACAGATAAACAGAATGATCTTGAAAAACTTATCTAAACGGCAAAAGCTGATCTTATCGATTCTTGTAATCGGTGCTATATGTGCATCGGTCGTATCAACAATATTTCTCGTACGCCATCTGAAATCCAATACCAACAAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTGAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTATAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCtc ] [+] EMBL CD160026 [ GCATTTGTCTTACAGATAAACAGAATGATCTTGAAAAACTTATCTAAACGGCAAAAGCTGATCTTATCGATTCTTGTAATCGGTGCTATATGTGCATCGGTCGTATCAACAATATTTCTCGTACGCCATCTGAAATCCAATACCAACAAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCCGTTGAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAGAAGAGCCTGTTAAAGAACCGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCtc ] [+] EMBL CD116723 [ ATTTCTCGTACGCCATCTGAAATCCAATACCAACAAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTGAAGAACTGCCTCCAGCTACAAAACCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAA GAACTGTCTCC AGCTACA AAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATG AAGTAAAGGAGCCTGTTAAAGGTG ] [-] EMBL CD165398 [ aCAATGCCAACAAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTGAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAA GAACTGTCTCC AGCTACA AAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCA ] [+] EMBL CD165445 [ TACCAACAAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTGAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAA GAACTGTCTCC AGCTACA AAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATC ] [+] EMBL CD161449 [ GTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTGAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAA GAACTGTCTCC AGCTACA AAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTG ] [+] EMBL CD161466 [ GTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTGAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAA GAACTGTCTCC AGCTACA AAAACACCTG ] [+] EMBL CD161453 [ GTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCCGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACAGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAA GAACTGTCTCC AGCTACA AAAACACCTG ] [+] EMBL CD161573 [ GTTCTAATCAATGAAGTAAAAGGGCCTGTTGAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAA GAACTGTCTCC AGCTACA AAAACACCTG ] [+] EMBL CD161646 [ GTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTCCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTGAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAA GAACTGTCTCC AGCTACA AAAACACCTG ] [-] EMBL CD161589 [ TTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAA GAACTGTCTCC AGCTACA AAAACACCTGT ] [+] EMBL CD161599 [ gcTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTGAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAA GAACTGTCTCC AGCTACA AAAACACCTG ] [+] EMBL CD157072 [ ATGAAGTAAAAGAGCCTGTTGAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGACGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAA GAACTG ] [-] EMBL CD123330 [ ACTGTTTCCACCTACAACAGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAACAGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAA GAACTGTCTCC ACCTACA ACAGCACCTGT ] [-] EMBL CD161442 [ GAGCCTGTTATAGGATTGTTTCCACCTTCAACAGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAACAGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAA GAACTGTCTCC AGCTACA AAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGT ] [-] EMBL CD161487 [ tatacCCTTCAGCCGCACCTGTTATAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACGTACAGCCGCACCTGTTATAATCAATGAAGTAAAAGAGCCTGTTAAAGGAACTGTCTCCTAGCTACAATAAAACACCTGTTATAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGT ] [-] EMBL CD123350 [ tttacCCTTCAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAGCACCTGTTCTAGTCAATGAAGTAGAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAA GAACTGTCACC AGCTACA AAAACACCTGT ] [+] EMBL CD159568 [ AAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAA GAACTGTCTCC AGCTACA AAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATG AAGTAAAAGAGCCTGTTAAAGGTGTTGT TGATCTACCCAATCAATTTGCTTGCTTGGATTACTTGGCTTCTTCATGT] consensusID : consensus_11107#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 499 fasta sequence [TTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGGTGTTGTTGATCTACCCAATCAATTTGCTTGCTTGGATTACTTGGCTTCTTCATGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGGGTAAACAGATGAGAGTTAATTGAATTCCCGTGGAC] [-] EMBL CD123328 [TTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGGTGTTGTTGATCTACCCAATCAATTTGCTTGCTTGGATTACTTGGCTTCTTCATGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGT ] [+] EMBL CD161509 [ GTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGGGTAAACAGATGAGAGTTAATTGAATTCCCGTGGAC] [+] EMBL CD161494 [ GTTCTAATCAATGAAGGAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGGACCTGCTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTG ] [+] EMBL CD123379 [ GTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTG ] [+] EMBL CD161551 [ GTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCGCCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTG ] [+] EMBL CD123255 [ GTTCTAATCAATGAAGTAAAAGAGCCTGTTGAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAGAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTG ] [+] EMBL CD123342 [ GTCCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTG ] [+] EMBL CD161548 [ GTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGGAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTG ] [+] EMBL CD161489 [ GTTCTAATCTATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGACGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAAACACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTG ] [+] EMBL CD123215 [ GAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAGAACACCTGTTCTAATCAATGAAGTAAGAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTG ] consensusID : consensus_11107#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 212 fasta sequence [NNNGNTNNGTNTACCCTTCAGCCGCNACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGT] [-] EMBL CD123343 [NNNGNTNNGTNTACCCTTCAGCCGCNACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11107#0 CAAGTTATCTGAAGGCTGTTCAAGAAGCATTTGTCTTACAGATAAACAGAATGATCTTGA 60 consensus_11107#2 ------------------------------------------------------------ consensus_11107#1 ------------------------------------------------------------ consensus_11107#0 AAAACTTATCTAAACGGCAAAAGCTGATCTTATCGATTCTTGTAATCGGTGCTATATGTG 120 consensus_11107#2 ------------------------------------------------------------ consensus_11107#1 ------------------------------------------------------------ consensus_11107#0 CATCGGTCGTATCAACAATATTTCTCGTACGCCATCTGAAATCCAATACCAACAAACTGT 180 consensus_11107#2 ------------------------------------------------------------ consensus_11107#1 ---------------------TTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGT 39 consensus_11107#0 CTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTGAAGAACTGT 240 consensus_11107#2 --------------------------------------------------NNNGNTNNGT 10 consensus_11107#1 CTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGAACTGT 99 * ** consensus_11107#0 CTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGA-ACTG 299 consensus_11107#2 NTACCCTTCAGCCGCNACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGA-ACTG 69 consensus_11107#1 CTCCAGCTACAAAAACACCTGTTCTAATCAATGAAGTAAAAGAGCCTGTTAAAGGTGTTG 159 * * * ************************************** ** consensus_11107#0 TC--TCCACCTA------------------------CAGCCGCACC-TGTTCTAATCAAT 332 consensus_11107#2 TC--TCCAGCTA------------------------CAAAAACACC-TGTTCTAATCAAT 102 consensus_11107#1 TTGATCTACCCAATCAATTTGCTTGCTTGGATTACTTGGCTTCTTCATGTTCTAATCAAT 219 * ** * * * * * ************* consensus_11107#0 GAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAAT 392 consensus_11107#2 GAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAAT 162 consensus_11107#1 GAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAAT 279 ************************************************************ consensus_11107#0 GAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAAT 452 consensus_11107#2 GAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGT---------- 212 consensus_11107#1 GAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCACCTACAGCCGCACCTGTTCTAATCAAT 339 ************************************************** consensus_11107#0 GAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAAT 512 consensus_11107#2 ------------------------------------------------------------ consensus_11107#1 GAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAAT 399 consensus_11107#0 GAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAAT 572 consensus_11107#2 ------------------------------------------------------------ consensus_11107#1 GAAGTAAAAGAGCCTGTTAAAGAACTGTCTCCAGCTACAAAAACACCTGTTCTAATCAAT 459 consensus_11107#0 GAAGTAAAGGAGCCTGTTAAAGGTGTGTCTNATCTACCCAATCAATTTGCTTGCTTGGAT 632 consensus_11107#2 ------------------------------------------------------------ consensus_11107#1 GAAG---GGTAAACAGATGAGAGTTAATTGAATTCCCGTGGAC----------------- 499 consensus_11107#0 TACTTGGCTTCTTCATGT 650 consensus_11107#2 ------------------ consensus_11107#1 ------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||