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Schistosoma mansoni
cluster # 11142 cluster # 11142       Sequences # 36       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11142#0 length = 981 sequences # 35  
consensus_11142#1 length = 290 sequences # 1  

consensusID : consensus_11142#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 35
consensus length = 981
fasta sequence
                              [GCTGGTGTATATCGTGGCATGGCTCCTTACAGAATTGTGTTTATTCGCCATGG-AGAGAGTGTTTACAATG-AAGAAAATCGATTTTGTGGTTGGCATGATGCAGATCTTTCAGGACAAGGTATCACTGAGGCTAAACAAGCTGGCCAACTTCTA-CGCCAAAATCACTTCA-CCTTTGATATTGCCTATACAAGCGTTCTAAAAAGAGCCATCAAGACTTTAAACTTTGTCCTTG-ATGAACTTGATCTTAACTGG-ATACCTGTGACAAAAACATGGCG-TCTAAATGAAAGAATGTACGGTGCTCTTCAAGGTCTGAATAAGTCTGAAACTGCTGCCAAACAT-GGAGAGGAACAAGTTAAAATATGGAGACGTGCTTATGATATACCTCCCCCTCCTGTTGACATTTCAGAT-CCTCGCTTCCCCGGTAATGAACCAAAGTATGCCTTACTTGACTCTTCCTGCATACCA-CGTA-CTGAGTGTTTAAAGGACACTGTTCAACGTGTACTGCCATTTTGGTTTGATACTATTTCTGCAA-GTATAAAGAGACGCGAACAGGTTCTGATTGTCGCCCATGGAAACAGTTTAAGAGCGCTTATCAAGTACTTGGATAATACATCTGATTCAGATATTGTGGAA-CTC-AATATA-CCCACTGGTATT-CCACTAGTCTATGAA-CTGGATGCGAA-CTTGAAG-CCAA-CCAAACACTATTATCTTGCCGATGAAGCGACAGTAGCAGCAG-CAATAG-CACGTGTGGCG-AACCAGGG-AAAAAAGAAATGAAGCGAATAATTATCATTATCGATAATTTCTTCATTATTCATCCATCCATTAATATTTAACACATGTTTTGAATAATTTTAGTCATCTATAGCTTTGAGTAATGAACAGATACTCTGATCGTCCTTACTCATAATCGTATTGTATGAAGTAAATATTTTCCTTTATAGCGTTTGTTTTATAGGTTATAGTTATGATAAGATCAAAAAATTA]

[+] EMBL AA559423             [GCTGGTGTATATCGTGGCATGGCTCCTTACAGAATTGTGTTTATTCGCCATGGAAGAGAGTGTTTACAATGNAAAAAAATCGATTTTGTGGTTGGCATGATGCAAATCTTTCAGGACAAGGTATCACTGAGGCTAAACAAGCTGGCCAACTTCTA CGCCAAAATCACTTCA CCTTTGATATTGCCTATACAAGCGTTCTAAAAAGAGCCATCAANACTTTAAACTTTGTCCTTGAATGAACTTGATCTTAACTGGAATACCTGTGACAAAAACATGGCG TCTAAATNAAAanaat                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD202608             [    agGTATATCGTGGCATAGCTCCTTACAGAATTGTGTTTATTCGCCATGG AGAGAGTGTTTACAATG AAGAAAATCGATTTTGTGGTTGGCATGATGCAGATCTTTCAGGACAAGGTATCACTGAGGCTAAACAAGCTGGCCAACTTCTA CGCCAAAATCACTTCA CCTTTGATATTGCCTATACAAGCGTTCTAAAAAGAGCCATCAAGACTTTAAACTTTGTCCTTG ATGAACTTGATCTTAACTGG ATACCTGTGACAAAAACATGGCG TCTAAATGAAAGAATGTACGGTGCTCTTCAAGGTCTGAATAAGTCTGAAACTGCTGCCAAACAT GGAGAGGAACAAGTTAAAATATGGAGACGTGCTTATGATATACCTCCCCCTCCTGTTGACATTTCAGAT CCTCGCTTCCCCGGTAATGAACCAAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AI975524             [        ATATCGTGGCATGGCTCCTTACAGAATTGTGTTTATTCGCCATGG AGAGAGTGTTTACAATG AAGAAAATCGATTTTGTGGTTGGCATGATGCAGATCTTTCAGGACAAGGTATCACTGAGGCTAAACAAGCTGGCCAACTTCTA CGCCAAAATCACTTCA CCTTTGATATTGCCTATACAAGCGTTCTAAAAAGAGCCATCAAGACTTTAAACTTTGTCCTTG ATGAACTTGATCTTAACTGG ATACCTGTGACAAAAACATGGCG TCTAAATGAAAGAATGTACGGTGCTCTTCAAGGTCTGAATAAGTCTGAAACTGCTGCCAAACAT GGAGAGGAACAAGTTAAAATATGGAGACGTGCTTATGATATACCTCCCCCTCCTGTTGACATTTCAGAT CCTCGCTTCCCCGGTAATGAACCAAAGTATGCCTTACTTGACTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AI976100             [        ATATCGTGGCATGGCTCCTTACAGAATTGAGTTTATTCGCCATGG AGAGAGTGTTTACAATG AAGAAAATCGATTTTGTGGTTGGCATGATGCAGATCTTTCAGGACAAGGTATCACTGAGGCTAAACAAGCTGGCCAACTTCTA CGCCAAAATCACTTCA CCTTTGATATTGCCTATACAAGCGTTCTAAAAAGAGCCATCAAGACTTTAAACTCTGTCCTTG ATGAACTTGATCTTAACTGG ATACCTGTGACAAAAACATGGCG TCTAAATGAAAGAATGTACGGTGCTCTTCAAGGTCTGAATAAGTCTGAAACTGCTGCCAAACAT GGAGAGGAACACGTTATAATATGGACACGTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD202585             [                   TGGCTCCTTACAGAATTGTGTTTATTCGCCATGG AGAGAGTGTTTACAATG AAGAAAATCGATTTTGTGGTTGGCATGATGCAGATCTTTCAGGACAAGGTATCACTGAGGCTAAACAGGGTGGCCAACTTCTA CGCCAAAATCACTTCA CCTTTGATATTGCCTATACAAGCGTTCTAAAAAGAGCCATCAAGACTTTAAACTTTGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BF936733             [                                             CGCCATGG AGAGAGTGTTTACAATG AAGAAAATCGATTTTGTGGTTGGCATGATGCAGATCTTTCAGGACAAGGTATCACTGAGGCTAAACAAGCTGGCCAACTTCTA CGCCAAAATCACTTCA CCTTTGATATTGCCTATACAAGCGTTCTAAAAAGAGCCATCAAGACTTTAAACTTTGTCCTTG ATGAACTTGATCTTAACTGG ATACCTGTGACAAAAACATGGCG TCTAAATGAAAGAATGTACGGTGCTCTTCAAGGTCTGAATAAGTCTGAAACTGCTGCCAAACAT GGAGAGGAACAAGTTAAAATATGGAGACGTGCTTATGATATACCTCCCCCTCCTGTTGACATTTCAGAT CCTCGCTTCCCCGGTAATGAACCAAAGTATGCCTTACTTGACTCTTCCTGCATACCA CGTA CTGAGTGTTTAAAGGACACTGTTCAACGTGTACTGCCATTTTGGTTTGATACTATTTCTGCAA GTATAAAGAGACGCGAACAGGTTCTGATTGTCGCCCATGGAAACAGTTTAAGAGCGCTTATCAAGTACTTGGATAATACATCTGATTCAGATATTGTGGAA CTC AATATACCCCACTGGTATT CCACTAGTCTATGAA CTGGATGCGAA CTTGAAG CC A CCAAACACTATTATCTTGCCGATGAAGCGACAGTAGCAGCAG CATTAGCCACGTGTGGg                                                                                                                                                                                                                                          ]
[+] EMBL CD169570             [                                                               TTACAATG AAAAAAATCGATTTTGTGGTTGGCATGATGCAGATCTTTCAGGACAAGGTATCACTGAGGCTAAACAAGCTGGCCAACTTCTA CGCCAAAATCACTTCA CCTTTGATATTGCCTATACAAGCGTTCTAAAAAGAGCCATCAAGACTTTAAACTTTGTCCTTG ATGAACTTGATCTTAACTGG ATACCTGTGACAAAAACATGGCG TCTAAATGAAAGAATGTACGGTGCTCTTCAAGGTCTGAATAAGTCTGAAACTGCTGCCAAACAT GGAGAGGAACAAGTTAAAATATGGAGACGTGCTTATGATATACCTCCCCCTCCTGTTGACATTTCAGAT CCTCGCTTCCCCGGTAATGAACCAAAGTATGCCTTACTTGACTCTTCCTGCATACCA CGTA CTGAGTGTTTAAAGGACACTGTTCAACGTGTACTGCCATTTTGGTTTGATACTATTTCTGCAA GTATAAAGAGACGCGAACAGGTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD202616             [                                                                                                                          ATCACTGAGGCTAAACAAGCTGGCCAACTTCTA CGCCAAAATCACTTCA CCTTTGATATTGCCTATACAAGCGTTCTAAAAAGAGCCATCAAGACTTTAAACTTTGTCCTTG ATGAACTGGATCTTAACTGG ATACCTGTGACAAAAACATGGCG TCTAAATGAAAGAATGTACGGTGCTCTTCAAGGTCTGAATAAGTCTGAAACTGCTGCCAAACAT GGAGAGGAACAAGTTAAAATATGGAGACGTGCTTATGATATACCTCCCCCTCCTGTTGACATTTCAGAT CCTCGCTTCCCCGGTAATGAACCAAAGCGTGCCCTACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD072388             [                                                                                                                                  GGCTAAACCAGCTGGCCAACTTCTACCGCCAAAATCACTTCACCCTTTGATATNGCCTATACAAGCG TCTAAAAAGAGCCATCAAGACTTTAAACTTTGTCCTTG ATGAACTTGATCTTAACTGG ATACCTGTGACAAAAACATGGCG TCTAAATGAAAGAATGTACGGTGCTCTTCAAGGTCTGAATAAGTCTGAAACTGCTGCCAAACAT GGAGAGGAACAAGTTAAAATATGGAGACGTGCTTATGATATACCTCCCCCTCCTGTTGACATTTCAGAT CCTCGCTTCCCCGGTAATGAACCAAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD072372             [                                                                                                                                  GGCTAAACAAGCTGGCCANCTTCTA CGTCAGAATCACTTCA CCTTTGATATTGCCTATACAAGCGTTCTAAAGAGAGCCATCAAGACTTTAAACTTTGTCCTTG ATGAACTTGATCTTAACTGG ATACCTGTGACAAAAACATGGCG TCTAAATGAAAGAATGTACGGTGCTCTTCAAGGTCTGAATAAGTCTGAAACTGCTGCCAAACAT GGAGAGGAACAAGTTAAAATATGGAGACGTGCTTATGATATACCTCCCCCTCCTGTTGACATTTCAGAT CCTCGCTTCCCCGGTAATGAACCAAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD072355             [                                                                                                                                                       TCTA CGCCAAAATCACTTCA CCTTTGATATTGCCTATACAAGCG TCTAAANAGAGCCATCAAGACTTTAAACTTTGTCCTTG ATGAACTTGATCTTAACTGG ATACCTGTGACAAAAACATGGCG TCTAAATGAAAGAATGTACGGTGCTCTTCAAGGTCTGAATAAGTCTGAAACTGCTGCCAAACAT GGAGAGGAACAAGTTAAAATATGGAGACGTGCTTATGATATACCTCCCCCTCCTGTTGACATTTCAGAT CCTCGCTTCCCCGGTAATGAACCAAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD089309             [                                                                                                                                                                                        GCCTATACAAGCGTTCTAAAAAGAGCCATCAAGACTTTAAACTTTGTCCTTG ATGAACTTGATCTTAACTGG ATACCTGTGACAAAAACATGGCG TCTAAATGAAAGAATGTACGGTGCTCTTCAAGGTCTGAATAAGTCTGAAACTGCTGCCAAACAT GGAGAGGAACAAGTTAAAATATGGAGACGTGCTTATGATATACCTCCCCCTCCTGTTGACATTTCAGAT CCTCGCTTCCCCGGTAATGAACCAAAGTATGCCTTACTTGACTCTTCCTGCATACCA CGTA CTGAGTGTTTAAAGGACACTGTTCAACGTGTACTGCCATTTTGGTTTGATACTATTTCTGCAA GTATAAAGAGACGCGAACAGGTTCTGATTGTCGCCCATGGAAACAGTTTAAGAGCGCT                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL BG932418             [                                                                                                                                                                                                            AAGAGCCATCAAGACTTTAAACTTTGTCCTTG ATGAACTTGATCTTAACTGG ATACCTGTGACAAAAACATGGCG TCTAAATGAAAGAATGTACGGTGCTCTTCAAGGTCTGAATAAGTCTGAAACTGCTGCCAAACAT GGAGAGGAACAAGTTAAAATATGGAGACGTGCTTATGATATACCTCCCCCTCCTGTTGACATTTCAGAT CCTCGCTg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AI977618             [                                                                                                                                                                                                                        GACTTTAAACTTTGTCCTTG ATGAACTTGATCTTAACTGG ATACCTGTGACAAAAACATGGCG TCTAAATGAAAGAATGTACGGTGCTCTTCAAGGTCTGAATAAGTCTGAAACTGCTGCCAAACAT GGAGAGGAACAAGTTAAAATATGGAGACGTGCTTATGATATACCTCCCCCTCCTGTTGACATTTCAGAT CCTCGCTTCCCCGGTAATGAACCAAAGTATGCCTTACTTGACTCTTCCTGCATACCA CGTA CTGAGTGTTTAAAGGACACTGTTCAACGTGTACTGCCATTTTGGTTTGATACTATTTCTGCAA GTATAAAGAGACGCGAACAGGTTCTGATTGTCGCCCATGGAAACAGTTTAAGAGCGCTTATCAAGTACTTGGATAATACATCTGATTCAGATATTGTGGAA CTC AATATA CCCACTGGTATT CCACTAGTCTATGAA CTGGATGCGAA CTTGAAG CCAA CCAAACACTATTATCTTGCCGATGAAGCGACAGTAGCAGCAG CAATAG CACGTGTGGCG AACCAGGG AAAAAAGAAATGAAGCGAATAATTATCATTATCGATAATTTCTTCATTATTCATCCATCCATTAATATTTAACACATGTTTTGAATAAATTTAGTCATCTATAGCTTTGAGT                                                                                                               ]
[+] EMBL AA559596             [                                                                                                                                                                                                                          CTTTAAACTTTGTCCTTG ANGAACTTGATCTTAACTGG ATACCNGTGACAAAAACATGGCGNTCTNAATGANNNAATGTACGGTGCTCTTCAAGGTCTGAATAATTCTGAAACTGCTGCCAAACATGGGAGAGGAACAAGTTAAGATATGGAGACGTGCTTATGATNTACCNCCCCCTCCTGTTGACATTTCNNAT CCTCGCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD132750             [                                                                                                                                                                                                                              AAACTTTGTCCTTG ATGAACTTGATCTTAACTGG ATACCTGTGACAAAAACATGGCG TCTAAATGAAAGAATGTACGGTGCTCTTCAAGGTCTGAATAAGTCTGAAACTGCTGCCAAACAT GGAGAGGAACAAGTTAAAATATGGAGACGTGCTTATGATATACCTCCCCCTCCTGTTGACATTTCAGAT CCTCGCTTCCCCGGTAATGAACCAAAGTATGCCTTACTTGACTCTTCCTGCATACCA CGTA CTGAGTGTTTAAAGGACACTGTTCAACGTGTACTGCCATTTTGGTTTGATACTATTTCTGCAA GTATAAAGAGACGCGAACAGGTTCTGATTGTCGCCCATGGAAACAGTTTAAGAGCGCTTATCAAGTACTTGGATAATACATCTGATTCAGATATTGTGGAA CTC AATATA CCCACTGGTATT CCACTAGTCTATGAA CTGGATGCGAA CTTGAAG CCAA CCAAACACTATTATCTTGCCGATGAAGCGACAGTAGCAGCAG CAATAG CAC                                                                                                                                                                                                                                                 ]
[+] EMBL AI977177             [                                                                                                                                                                                                                                                                                            TAAATGAAAGAATGTACGGTGCTCTTCAAGGTCTGAATAAGTCTGAAACTGCTGCCAAACAT GGAGAGGAACAAGTTAAAATATGGAGACGTGCTTATGATATACCTCCCCCTCCTGTTGACATTTCAGAT CCTCGCTTCCCCGGTAATGAACCAAAGTATGCCTTACTTGACTCTTCCTGCATACCA CGTA CTGAGTGTTTAAAGGACACTGTTCAACGTGTACTGCCATTTTGGTTTGATACTATTTCTGCAA GTATAAAGAGACGCGAACAGGTTCTGATTGTCGCCCATGGAAACAGTTTAAGAGCGCTTATCAAGTACTTGGATAATACATCTGATTCAGATATTGTGGAA CTC AATATA CCCACTGGTATT CCACTAGTCTATGAA CTGGATGCGAA CTTGAAG CCAA CCAAACACTATTATCTTGCCGATGAAGCGACAGTAGCAGCAG CAATAG CACGTGTGGCG AACCAGGG AAAAAAGATATGAAGCGAATAATTATCATTATCGATAATTTCTTCATTATTCATCCATCCATTAATATTTAACACATGTTTTGAATAAATTTAGT                                                                                                                                ]
[+] EMBL CD142972             [                                                                                                                                                                                                                                                                                                                                       TGAAACTGCTGCCAAACAT GGAGAGGAACAAGTTAAAATATGGAGACGTGCTTATGATATACCTCCCCCTCCTGTTGACATTTCAGAT CCTCGCTTCCCCGGTAATGAACCAAAGTATGCCTTACTTGACTCTTCCTGCATACCA CGTA CTGAGTGTTTAAAGGACACTGTTCAACGTGTACTGCCATTTTGGTTCGATACTATTTCTGCAA GTATAAAGAGACGCGAACAGGTTCTGATTGTCGCCCATGGAAACAGTTTAAGAGCGCTTATCAAGTACTTGGATAATACATCTGATTCAGATATTGTGGAA CTC AATATA CCCACTGGTATT CCACTAGTCTATGAA CTGGATGCGAA CTTGAAG C                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD138996             [                                                                                                                                                                                                                                                                                                                                                             AGAGGAACAAGTTAAAATATGGAGACGTGCTTATGATATACCTCCCCCTCCTGTTGACATTTCAGAT CCTCGCTTCCCCGGTAATGAACCAAAGTATGCCTTACTTGACTCTTCCTGCATACCA CGTA CTGAGTGTTTAAAGGACACTGTTCAACGTGTACTGCCATTTTGGTTTGATACTATTTCTGCAA GTATAAAGAGACGCGAACAGGTTCTGATTGTCGCCCATGGAAACAGTTTAAGAGCGCTTATCAAGTACTTGGATAATACATCTGATTCAGATATTGTGGAA CTC AATATA CCCACTGGTATT CCACTAGTCTATGAA CTGGATGCGAA CTTGAAG CCAA CCAAACACTATTATCTTGCCGATGAAGC                                                                                                                                                                                                                                                                          ]
[+] EMBL CD125559             [                                                                                                                                                                                                                                                                                                                                                             AGAGGAACAAGTTAAAATATGGAGACGTGCTTATGATATACCTCCCCCTCCTGTTGACATTTCAGAT CCTCGCTTCCCCGGTAATGAACCAAAGTATGCCTTACTTGACTCTTCCTGCATACCA CGTA CTGAGTGTTTAAAGGACACTGTTCAACGTGTACTGCCATTTTGGCTTGATACTATTTCTGCAA GTTTAAAGAGACGCGAACAGGTTCTGATTGTCGCCCATGGAAACAGTTTAAGAGCGCTTATCAAGTACTTGGATAATACATCTGATTCAGATATTGTGGAA CTC AATATA CCCACTGGTATT CCACTAGTCTATGAA CTGGATGCGAA CTTGAAG CCAA CCAAACACTATTATCTTGCCGATGA                                                                                                                                                                                                                                                                             ]
[+] EMBL CD084189             [                                                                                                                                                                                                                                                                                                                                                                                      CGTGCTTATGATATACCTCCCCCTCCTGTTGACATTTCAGAT CCTCGCTTCCCCGGTAATGAACCAAAGTATGCCTTACTTGACTCTTCCTGCATACCA CGTA CTGAGTGTTTAAAGGACACTGTTCAACGTGTACTGCCATTTTGGTTTGATACTATTTCTGCAA GTATAAAGAGACGCGAACAGGTTCTGATTGTCGCCCATGGAAACAGTTTAAGAGCGCTTATCAAGTACTTGGATAATACATCTGATTCAGATATTGTGGAA CTC AATATA CCCACTGGTATT CCACTAGTCTATGAA CTGGATGCGAA CTTGAAG CCAA CCAAACACTATTATCTTGCCGATGAAGCGACAGTAGCAGCAG CAATAG CACGTGTGGCG AACCAGGG AAAAAAGAAATGAAGCGAATAATTATCATTATCGATAATTTCTTCATTATTCATCCATCCATTAATATTTAACACATGTTTTGAATAATTTTAGTCATCTATAGCTTTGAGTAATGAACAGATACTCTGATCGTCCTTACTCATAA                                                                             ]
[-] EMBL CD072384             [                                                                                                                                                                                                                                                                                                                                                                                                                    GACA TTCAGATNGCTCGC TCCCCGGTAATGANCCAAAGTATGCCTTACTTGACTCTTCCTGCATACCA CGTA CTGAGTGTNTAAAGGACACTGTTCAACGTGTACTGCCATTTTGGTTTGATACTATTTCTGCAA GTATAAAGAGACGCGAACAGGTTCTGATTGTCGCCCATGGAAACAGTTTAAGAGCGCTTATCAAGTACTTGGATAATACATCTGATTCAGATATTGTGGAA CTC AATATA CCCACTGGTATT CCACTAGTCTATGAA CTGGATGCGAA CTTGAAG CCAA CCAAA                                                                                                                                                                                                                                                                                                 ]
[-] EMBL BG930817             [                                                                                                                                                                                                                                                                                                                                                                                                                                     GCTTCCCCGGTAATGAACCAAAGTATGCCTTACTTGACTCTTCCTGCATACCA CGTA CTGAGTGTTTAAAGGACACTGTTCAACGTGTACTGCCATTTTGGTTTGATACTATTTCTGCAA GTATAAAGAGACGCGAACAGGTTCTGATTGTCGCCCATGGAAACAGTCTAAGAGCGCTTATCAAGTACTTGGATAATACATCTGATTCAGATATTGTGGAA CTC AATATA CCCACTGGTATT CCACTAGTCTATGAA CTGGATGCGAA CTTGAAG CCAA CCAAACACTATTATCTTGCCGATGAAGCGACAGTAGCAGCAG CAATAG CACGTGTGGCG Ac                                                                                                                                                                                                                                      ]
[+] EMBL CD142924             [                                                                                                                                                                                                                                                                                                                                                                                                                                           CCGGTAATGAACCAAAGTATGCCTTACTTGACTCTTCCTGCATACCA CGTA CTGAGTGTTTAAAGGACACTGTTCAACGTGTACTGCCATTTTGGTTTGATACTATTTCTGCAA GTATAAAGAGACGCGAACAGGTTCTGATTGTCGCCCATGGAAACAGTTTAAGAGCGCTTATCAAGTACTTGGATAATACATCTGATTCAGATATTGTGGAA CTC AATATA CCCACTGGTATT CCACTAGTCTATGAA CTGGATGCGAA CTTGAAG CCAA CCAAACACTATTATCTTGCCGATGAAGCGAC                                                                                                                                                                                                                                                                       ]
[+] EMBL SM1247298            [                                                                                                                                                                                                                                                                                                                                                                                                                                                       CAAAGTATGCCTTACTTGACTCTTCCTGCATACCA CGTA CTGAGTGTTTAAAGGACACTGTTCAACGTGTACTGCCATTTTGGTTTGATACTATTTCTGCAA GTATAAAGAGACGCGAACAGGTTCTGATTGTCGCCCATGGAAACAGTTTAAGAGCGCTTATCAAGTACTTGGATAATACATCTGATTCAGATATTGTGGAA CTC AATATA CCCACTGGTATT CCACTAGTCTATGAA CTGGATGCGAA CTTGAAG CCAA CCAAACACTATTATCTTGCCGATGAAGCGACAGTAGCAGCAG CAATAG CACG                                                                                                                                                                                                                                                ]
[-] EMBL SM1247312            [                                                                                                                                                                                                                                                                                                                                                                                                                                                        AAAGTATGCCRTACTTGACTCTTCCTGNATACCANCGTAKCTGAGTGSTTAAAGGACACTGTCTAACGMGTACTGCCA TTTGGTTTGATACTATTTCTGCAAGGTATAAYGAGACGCGAACAGGTTCTGATTGTCGCCCATGGAAACAGTTTAAGAGCGCTTATCAAGTACTTGGATAATACATCTGATTCAGATATTGTGGAA CTC AATATA CCCACTGGTATT CCACTAGTCTATGAA CTGGATGCGAA CTTGAAGNCCAA CCAAACACTATTATCTTGCCGATGAAGCGACAGTAGCAGCAG CAATAG CACGT                                                                                                                                                                                                                                               ]
[-] EMBL CD196722             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TACCA CGTA CTGAGTGTTTAAAGGACACTGTTCAACGTGTACTGCCATTTTGGTTTGATACTATTTCTGCAA GTATAAAGAGACGCGAACAGGTTCTGATTGTCGCCCATGGAAACAGTTTAAGAGCGCTTATCAAGTACTTGGATAATACATCTGATTCAGATATTGTGGAA CTC AATATA CCCACTGGTATT CCACTAGTCTATGAA CTGGATGCGAA CTTGAAG CCAA CCAAACACTATTATCTTGCCGATGAAGCGACAGTAGCAGCAG CAATAG CACGTGTGGCG AACCAGGG AAAAAAGAAATGAAGCGAATAATTATCATTATCGATAATTTCTTCATTATTCATCCATCCATTAATATTTAACACATGTTTTGAATAATTTTAGTCATCTATAGCTTTGAGTAATGAACAGATACTCTGATCGTCCTTACTCATAATCGTATTGTATGAAGTA                                                            ]
[+] EMBL CD079109             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GCAA GTATAAAGAGACGCGAACAGGTTCTGATTGTCGCCCATGGAAACAGTTTAAGAGCGCTTATCAAGTACTTGGATAATACATCTGATTCAGATATTGTGGAA CTC AATATA CCCACTGGTATT CCACTAGTCTATGAA CTGGATGCGAA CTTGAAG CCAA CCAAACACTATTATCTTGCCGATGAAGCGACAGTAGCAGCAG CAATAG CACGTGTGGCG AACCAGGG AAAAAAGAAATGAAGCGAATAATTATCATTATCGATAATTTCTTCATTATTCATCCATCCATTAATATTTAACACATGTTTTGAATAATTTTAGTCATCTATAGCTTTGAGTAATGAACAGATACTCTGATCGTCCTTACTCATAATCGTATTGTATGAAGTAAATATTTTCCTTTATAGCGTTTGTTTTATAGGTTATAGTTATGATAAGATCAAAAAATT ]
[-] EMBL CD073563             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CAA GTATAAAGAGACGCGAACAGGTTTTGATTGTCGCCCATGGAAACAGTTTAAGAGCGCTTATCAAGTACTTGGATAATACATCTGATTCAGATATTGTGGAA CTC AATATA CCCACTGGTATT CCACTAGTCTATGAA CTGGATGCGAA CTTGAAG CCAA CCAAACACTATTATCTTGCCGATGAAGCGACAGTAGCAGCAG CAATAG CACGTGTGGCG AACCAGGG AAAAAAGAAATGAAGCGAATAATTATCATTATCGATAATTTTTTCATTATTCATCCATCCATTAATATTTAACACATGTTTTGAATAATTTTAGTCATCTATAGCTTTGAGTAATGAACAGATACTCTGATCGTCCTTACTCATAATCGTATTGTATGAAGTAAATATTTTCCTTTATAGCGTTTGTTTTATAGGTTATAGTTATGATAAGATCAAAAAATTA]
[-] EMBL CD137081             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GTCGCCCATGGAAACAGTTTAAGAGCGCTTATCAAGTACTTGGATAATACATCTGATTCAGATATTGTGGAA CTC AATATA CCCACTGGTATT CCACTAGTCTATGAA CTGGATGCGAA CTTGAAG CCAA CCAAACACTATTATCTTGCCGATGAAGCGACAGTAGCAGCAG CAATAG CACGTGTGGCG AACCAGGG AAAAAAGAAATGAAGCGAATAATTATCATTATCGATAATTTCTTCATTATTCATCCATCCATTAATATTTAACACATGTTTTGAATAATTTTAGTCATCTATAGCTTTGAGTAATGAACAGATACTCTGATCGTCCTTACTCATA                                                                              ]
[-] EMBL SMW743               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CAGTTTAAGAGCGCTTATCAAGTACTTGGATAATACATCTGATTCAGATATTGTGGAA CTC AATATA CCCACTGGTATT CCACTAGTCTATGAA CTGGATGCGAA CTTGAAG CCAA CCAAACACTATTATCTTGCCGATGAAGCGACAGTAGCAGCAG CAATAG CACGTGTGGCG AACCAGGG AAAAAAGAAATGAAGCGAATAATTATCATTATCGATAATTTCTTCATTATTCATCCATCCATTAATATTTAACACATGTTTTGAATAATTTTAGTCATCTATAGCTTTGAGTAATGAACAGATACTCTGATCGTCCTTACTCATAATCGTATTGTATGAAGTAAATA                                                        ]
[+] EMBL CD136820             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TTTAAGAGCGCTTATCAAGTACTTGGATAATACATCTGATTCAGATATTGTGGAA CTC AATATA CCCACTGGTATT CCACTAGTCTATGGA CTGGATGCGAA CTTGAAG CCAA CCAAACACTATTATCTTGCCGATGAAGCGACAGTAGCAGCAG CAATAG CACGTGTGGCG AGCCAGGG AAAAAAGAAATGGAGCGAATAATTATCATTATCGATAATTTCTTCATTATTCATCCATCCATTAATATTTAACACATGTTTTGAATAATTTTAGTCATCTATAGCTTTGAGTAATGAACAGATACTCTGATCGTCCTTACTCAT                                                                               ]
[-] EMBL AA999292             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ACATCTGAGTCAGATATTGTGGAACCTCAAATATC CCCACTGGTATTCCCACTAGTCTATGAACCTGGATGCGAACCTTGAAG CCAACCCAAACACTATTATCTTGCCGATGAAGCGACAGTAGCAGCAG CAATAG CACGTGTGGCG AACCAGGG AAAAAAGAAATGAAGCGAATAATTATCATTATCGATAATTTCTTCATTATTCATCCATCCATTAATATTTAACACATGTTTTGAATAATTTTAGTCATCTATAGCTTTGAGTAATGAACAGATACTCTGATCGTCCTTACTCATAATCGTATTGTATGAAGTAAATA                                                        ]
[-] EMBL AA999387             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TT CCACTAGTCTATGAA CTGGATGCGAA CTTGAAG CCAA CCAAACACTATTATCTTGCCGATGAAGCGACAGTAGCAGCAGAAAATAG CACGTGTGGCG AACCAGGG AAAAAAGAAATGAAGCGAATAATTATCATTATCGATAATTTCTTCATTATTCATCCATCCATTAATATTTAACACATGTTTTGAATAATNTTAGTCATCTATAGCTTTGAGTAATGAACAGATACTCTGATCGTCCTTACTCATAATCGTATTGTATGAAGTAAATATTTT                                                    ]
[+] EMBL SM632                [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AG CCCGTGTGGCGAAACCNGGGAAAAAAAGAAATGAAGCGAATAATTATCTTTATCGATAATTTCTTCTTTATTCTTCCATCCATTAATATTTAACTCTTGTTTGGAATAATTTTAGTCATCTATAGCTTNGAGTAATGAACNGATACTCTGATCGTCCTTACTCATAATCGTATTGTATGANGTA                                                            ]


>consensus_11142#0 GCTGGTGTATATCGTGGCATGGCTCCTTACAGAATTGTGTTTATTCGCCATGGAGAGAGT GTTTACAATGAAGAAAATCGATTTTGTGGTTGGCATGATGCAGATCTTTCAGGACAAGGT ATCACTGAGGCTAAACAAGCTGGCCAACTTCTACGCCAAAATCACTTCACCTTTGATATT GCCTATACAAGCGTTCTAAAAAGAGCCATCAAGACTTTAAACTTTGTCCTTGATGAACTT GATCTTAACTGGATACCTGTGACAAAAACATGGCGTCTAAATGAAAGAATGTACGGTGCT CTTCAAGGTCTGAATAAGTCTGAAACTGCTGCCAAACATGGAGAGGAACAAGTTAAAATA TGGAGACGTGCTTATGATATACCTCCCCCTCCTGTTGACATTTCAGATCCTCGCTTCCCC GGTAATGAACCAAAGTATGCCTTACTTGACTCTTCCTGCATACCACGTACTGAGTGTTTA AAGGACACTGTTCAACGTGTACTGCCATTTTGGTTTGATACTATTTCTGCAAGTATAAAG AGACGCGAACAGGTTCTGATTGTCGCCCATGGAAACAGTTTAAGAGCGCTTATCAAGTAC TTGGATAATACATCTGATTCAGATATTGTGGAACTCAATATACCCACTGGTATTCCACTA GTCTATGAACTGGATGCGAACTTGAAGCCAACCAAACACTATTATCTTGCCGATGAAGCG ACAGTAGCAGCAGCAATAGCACGTGTGGCGAACCAGGGAAAAAAGAAATGAAGCGAATAA TTATCATTATCGATAATTTCTTCATTATTCATCCATCCATTAATATTTAACACATGTTTT GAATAATTTTAGTCATCTATAGCTTTGAGTAATGAACAGATACTCTGATCGTCCTTACTC ATAATCGTATTGTATGAAGTAAATATTTTCCTTTATAGCGTTTGTTTTATAGGTTATAGT TATGATAAGATCAAAAAATTA



consensusID : consensus_11142#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 290
fasta sequence
                              [CTGAGGCTAAACAAGCTGGCCAACTTCTACGCCAAAATCACTTCACCTTTGATATTGCCTATACAAGCGTTCTAAAAAGAGCCATCAAGACTTTAAACTTTGTCCTTGATGAACTTGATCTTAACTGGATACCTGTGACAAAAACATGGCGTCTAAATGAAAGAATGTACGGTGCTCTTCAAGGTCTGAATAAGTCTGAAACTGCTGCCAAACATGGAGAGGAACAAGTTAAAATATGGAGACGTGCTTATGATATACCTCCCGCTCCTGTTCCACCTGGGGTACCGGTC]

[-] EMBL CD168298             [CTGAGGCTAAACAAGCTGGCCAACTTCTACGCCAAAATCACTTCACCTTTGATATTGCCTATACAAGCGTTCTAAAAAGAGCCATCAAGACTTTAAACTTTGTCCTTGATGAACTTGATCTTAACTGGATACCTGTGACAAAAACATGGCGTCTAAATGAAAGAATGTACGGTGCTCTTCAAGGTCTGAATAAGTCTGAAACTGCTGCCAAACATGGAGAGGAACAAGTTAAAATATGGAGACGTGCTTATGATATACCTCCCGCTCCTGTTCCACCTGGGGTACCGGTC]


>consensus_11142#1 CTGAGGCTAAACAAGCTGGCCAACTTCTACGCCAAAATCACTTCACCTTTGATATTGCCT ATACAAGCGTTCTAAAAAGAGCCATCAAGACTTTAAACTTTGTCCTTGATGAACTTGATC TTAACTGGATACCTGTGACAAAAACATGGCGTCTAAATGAAAGAATGTACGGTGCTCTTC AAGGTCTGAATAAGTCTGAAACTGCTGCCAAACATGGAGAGGAACAAGTTAAAATATGGA GACGTGCTTATGATATACCTCCCGCTCCTGTTCCACCTGGGGTACCGGTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11142#0      GCTGGTGTATATCGTGGCATGGCTCCTTACAGAATTGTGTTTATTCGCCATGGAGAGAGT 60
consensus_11142#1      ------------------------------------------------------------
                                                                                   

consensus_11142#0      GTTTACAATGAAGAAAATCGATTTTGTGGTTGGCATGATGCAGATCTTTCAGGACAAGGT 120
consensus_11142#1      ------------------------------------------------------------
                                                                                   

consensus_11142#0      ATCACTGAGGCTAAACAAGCTGGCCAACTTCTACGCCAAAATCACTTCACCTTTGATATT 180
consensus_11142#1      ----CTGAGGCTAAACAAGCTGGCCAACTTCTACGCCAAAATCACTTCACCTTTGATATT 56
                           ********************************************************

consensus_11142#0      GCCTATACAAGCGTTCTAAAAAGAGCCATCAAGACTTTAAACTTTGTCCTTGATGAACTT 240
consensus_11142#1      GCCTATACAAGCGTTCTAAAAAGAGCCATCAAGACTTTAAACTTTGTCCTTGATGAACTT 116
                       ************************************************************

consensus_11142#0      GATCTTAACTGGATACCTGTGACAAAAACATGGCGTCTAAATGAAAGAATGTACGGTGCT 300
consensus_11142#1      GATCTTAACTGGATACCTGTGACAAAAACATGGCGTCTAAATGAAAGAATGTACGGTGCT 176
                       ************************************************************

consensus_11142#0      CTTCAAGGTCTGAATAAGTCTGAAACTGCTGCCAAACATGGAGAGGAACAAGTTAAAATA 360
consensus_11142#1      CTTCAAGGTCTGAATAAGTCTGAAACTGCTGCCAAACATGGAGAGGAACAAGTTAAAATA 236
                       ************************************************************

consensus_11142#0      TGGAGACGTGCTTATGATATACCTCCCCCTCCTGTTGACATTTCAGATCCTCGCTTCCCC 420
consensus_11142#1      TGGAGACGTGCTTATGATATACCTCCCGCTCCTGTTC-CACCTGGGGTACCGGTC----- 290
                       *************************** ********  **  *  * * *  *       

consensus_11142#0      GGTAATGAACCAAAGTATGCCTTACTTGACTCTTCCTGCATACCACGTACTGAGTGTTTA 480
consensus_11142#1      ------------------------------------------------------------
                                                                                   

consensus_11142#0      AAGGACACTGTTCAACGTGTACTGCCATTTTGGTTTGATACTATTTCTGCAAGTATAAAG 540
consensus_11142#1      ------------------------------------------------------------
                                                                                   

consensus_11142#0      AGACGCGAACAGGTTCTGATTGTCGCCCATGGAAACAGTTTAAGAGCGCTTATCAAGTAC 600
consensus_11142#1      ------------------------------------------------------------
                                                                                   

consensus_11142#0      TTGGATAATACATCTGATTCAGATATTGTGGAACTCAATATACCCACTGGTATTCCACTA 660
consensus_11142#1      ------------------------------------------------------------
                                                                                   

consensus_11142#0      GTCTATGAACTGGATGCGAACTTGAAGCCAACCAAACACTATTATCTTGCCGATGAAGCG 720
consensus_11142#1      ------------------------------------------------------------
                                                                                   

consensus_11142#0      ACAGTAGCAGCAGCAATAGCACGTGTGGCGAACCAGGGAAAAAAGAAATGAAGCGAATAA 780
consensus_11142#1      ------------------------------------------------------------
                                                                                   

consensus_11142#0      TTATCATTATCGATAATTTCTTCATTATTCATCCATCCATTAATATTTAACACATGTTTT 840
consensus_11142#1      ------------------------------------------------------------
                                                                                   

consensus_11142#0      GAATAATTTTAGTCATCTATAGCTTTGAGTAATGAACAGATACTCTGATCGTCCTTACTC 900
consensus_11142#1      ------------------------------------------------------------
                                                                                   

consensus_11142#0      ATAATCGTATTGTATGAAGTAAATATTTTCCTTTATAGCGTTTGTTTTATAGGTTATAGT 960
consensus_11142#1      ------------------------------------------------------------
                                                                                   

consensus_11142#0      TATGATAAGATCAAAAAATTA 981
consensus_11142#1      ---------------------
                                            




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)