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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11149#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1405 fasta sequence
[ACTCCTCTGTCCTTGATAACGGCAACCATTCAAACCCTCAGATCCGCGACATGTCTAGTAACATGATAAAAGCTGACTGTGTTGTGATAG-AAGACAGTTTTCGAGGATTTCCTA-CGGAGTATTTCTGCACATCTCCTCGGTATGACGAATG-CTTGGATTATGTTCTCATACCAAATGGTATGATAAAAGATAGGCTTGAAAAAATGTCAATGGATATTGTTGACTATTACGAGGCCTGTAATGCGACATCGATCACACTTATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAGTTATGTTAATGATGTCAGTATTCATGAACCTATATTAACTGGTTTAGGAGATCCTTCGGAATACAAAGATAAGAATGTTCTTGTGGTCGAAGATATAATTGACACAGGAAAAACAATAACGAAACTCATAAGCCATTTGGATAGTTTGTCTACGAAAAGTGTTAAAGTCGCAAGCCTCCTCGTCAAGCGAACATCGCCCAGAAATGATTACCGACCAGACTTTGTTGGTTTTGAAGTTCCAAATCGATTTGTCGTTGGCTATGCTTTAGACTATAATGATAATTTCCG-TGACCTGCACCATATTTGCGTGA-TTAATGAAGTGGGTCAAAAAAAATTCTCTGTACCCTGTACATCAAAACCTGTTTAAATGTTTT-TTAGTTGAGATAAT-AACAAGAAACTAAATAAATACAGAAACAGAATTTCCTTCAAAATGGTCATTCTGTAAATAATTAATCAATATCACAGCCAAAAAAATATTTAACACTTCGTTGTTCTCTTCCAACTTCTTCTATACTTTTGTTATCCTATCTATACTATCTATACTACATATACTATGCTATCTATCCTATCTATATACTATACTATCGTTAGTCTATACTTGTATAATCAACATATCTTCAATAAGATATGTATTATTATCAACGAAACTGATTTTTCCATATCTATATATATTCTTAACTTATTTCTTTTTTTTATATTTTATTTCTAAGATCATATTTGGCACACAAATGTTTTTCTTTCTTTTTTCTCTTTTTTTCTTGTTTTACTCCTTTCATTTCCGTTGATCAATTGATTAATCAATTTAATTGATTATTATTACACTTCTTATACTTCCTTCCCCTCCCCCAACTTCTATCATCAAAATAAAATGTTTCTTCATAAGAAAGATTCTAATGTTGTATGATTGACCAAAAAACAAAAAAAAACATTTTTCAATAATGATCATTAATTTCTAGTGTTATTTATTACTTATTAAAAATATTTTTTAGTATTATTGTTATTAATAAAACTAAAATCGAAGAAAAA]
[+] EMBL AI975065 [ACTCCTCTGTCCTTGATAACGGCAACCATTCAAACCCTCAGATCCGCGACATGTCTAGTAACATGATAAAAGCTGACTGTGTTGTGATAG AAGACAGTTTTCGAGGATTTCCTA CGGAGTATTTCTGCACATCTCCTCGGTATGACGAATG CTTGGATTATGTTCTCATACCAAATGGTATGATAAAAGATAGGCTTGAAAAAATGTCAATGGATATTGTTGACTATTACGAGGCCTGTAATGCGACATCGATCACACTTATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAGTTATGTTAATGATGTCAGTATTCATGAACCTATATTAACTGGTTTAGGAGATCCTTCGGAATACAAAGATAAGAATGTTCTTGTGGTCGAAGATATAATTGACACAGGAAAAACAATAACGAAACTCATAAGCCATTTGGATAGTTTGTCTACGAAAAGTGTTAAAG ]
[+] EMBL SMHGPRT [ ATGTCTAGTAACATGATAAAAGCTGACTGTGTTGTGATAG AAGACAGTTTTCGAGGATTTCCTA CGGAGTATTTCTGCACATCTCCTCGGTATGACGAATG CTTGGATTATGTTCTCATACCAAATGGTATGATAAAAGATAGGCTTGAAAAAATGTCAATGGATATTGTTGACTATTACGAGGCCTGTAATGCGACATCGATCACACTTATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAGTTATGTTAATGATGTCAGTATTCATGAACCTATATTAACTGGTTTAGGAGATCCTTCGGAATACAAAGATAAGAATGTTCTTGTGGTCGAAGATATAATTGACACAGGAAAAACAATAACGAAGCTCATAAGCCATTTGGATAGTTTGTCTACGAAAAGTGTTAAAGTCGCAAGCCTCCTCGTCAAGCGAACATCGCCCAGAAATGATTACCGACCAGACTTTGTTGGTTTTGAAGTTCCAAATCGATTTGTCGTTGGCTATGCTTTAGACTATAATGATAATTTCCG TGACCTGCACCATATTTGCGTGA TTAATGAAGTGGGTCAAAAAAAATTCTCTGTACCCTGTACATCAAAACCTGTTTAAATGTTTT TTAGTTGAGATAAT AACAAGAAACTAAATAAATACAGAAACAGAATTTCCTTCAAAATGGTCATTCTGTAAATAATTAATCAATATCACAGCCAAAAAAATATTTAACACTTCGTTGTTCTCTTCCAACTTCTTCTATACTTTTGTTATCCTATCTATACTATCTATACTACATATACTATGCTATCTATCCTATCTATATACTATACTATCGTTAGTCTATACTTGTATAATCAACATATCTTCAATAAGATATGTATTATTATCAACGAAACTGATTTTTCCATATCTATATATATTCTTAACTTATTTCTTTTTTTTATATTTTATTTCTAAGATCATATTTGGCACACAAATGTTTTTCTTTCTTTTTTCTCTTTTTTTCTTGTTTTACTCCTTTCATTTCCGTTGATCAATTGATTAATCAATTTAATTGATTATTATTACACTTCTTATACTTCCTTCCCCTCCCCCAACTTCTATCATCAAAATAAAATGTTTCTTCATAAGAAAGATTCTAATGTTGTATGATTGACCAAAAAACAAAAAAAAACATTTTTCAATAATGATCATTAATTTCTAGTGTTATTTATTACTTATTAAAAATATTTTTTAGTATTATTGTTATTAATAAAACTAAAATCGAAGAAAAA]
[+] EMBL BF936369 [ CTGTGTTGTGATAGAAAGACAGTTTTCGAGGATTTCCTACCGGAGTATTTCTGCACATCTCCTCGGTATGACAAATGCCTTGGATTATGTTCTCATACCAAATGGTATGATAAAAGATAGGCTTGAAAAAATGTCAATGGATATTGTTGACTATTACGAGGCCTGTAATGCGACATCGATCACACTTATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAGTTATGTTAATGATGTCAGTATTCATGAACCTATATTAACTGGTTTAGGAGATCCTTCGGAATACAAAGATAAGAATGTTCTTGTGGTCGAAGATATAATTGACACAGGAAAAACAATAACGAAACTCATAAGCCATTTGGATAGTTTGTCTACGAAAAGTGTTAAAGTCGCAAGCCTCCTCGTCAAGCGAACATCGCCCAGAAATGATTACCGACCAGACTTTGTTGGTTTTGAAGTTCCAAATCGATTTGTCGTTGGCTATGCTTTAGACTATAATGATAATTTCCG TGACCTGCACCATATTTGCGTGA TTAATGAAGTGGGTC AAAAAAATTCTCTGTACCCTGTACATCAAA ]
[+] EMBL CD082817 [ aggAGTTTTCGAGGATTTCCTA CGGAGTATTTCTGCACATCTCCTCGGTATGACGAATG CTTGGATTATGTTCTCATACCAAATGGTATGATAAAAGATAGGCTTGAAAAAATGTCAATGGATATTGTTGACTATTACGAGGCCTGTAATGCGACATCGATCACACTTATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAGTTATGTTAATGATGTCAGTATTCATGAACCTATATTAACTGGTTTAGGAGATCCTTCGGAATACAAAGATAAGAATGTTCTTGTGGTCGAAGATATAATTGACACAGGAAAAACAATAACGAAACTCATAAGCCATTTGGATAGTTTGTCTACGAAAAGTGTTAAAGTCGCAAGCCTCCTCGTCAAGCGAACATCGCCCAGAAATGATTACCGACCAGACTTTGTTGGTTTTGAAGTTCCAAATCGATTTGTCGTTGGCTATGCTTTAGACTATAATGATAATTTCCG TGACCTGCACCATATTTGCGTGA TTAATGAAGTGGGTCANAAAAAATTCTCTGTACCCTGTACATCAAAACCT ]
[+] EMBL CD193577 [ AAATGGTATGATAAAAGATAGGCTTGAAAAAATGTCAATGGATATTGTTGACTATTACGAGGCCTGTAATGCGACATCGATCACACTTATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTat ]
[+] EMBL AI067637 [ CACTTATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAGTTATGTTAATGATGTCAGTATTCATGAACCTATATTAACTGGTTTAGGAGATCCTTCGGAATACAAAGATAAGAATGTTCTTGTGGTCGAAGATATAATTGACACAGGAAAAACAATAACGAAACTCATAAGCCATTTGGATAGTTTGTCTACGAAAAGTGTTAAAGTCGCAAGCCTCCTCGTCAAGCGAACATCGCCCAGAAATGATTACCGACCAGACTTTGTTGGTTTTGAAGTTCCAAATCGATTTGTCGTTGGCTATGCTTTAGACTATAATGATAATTTCCG TGACCTGCACCATATTTGC ]
[+] EMBL AI066990 [ TGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAGTTATGTTAATGATGTCAGTATTCATGAACCTATATTAACTGGTTTAGGAGATCCTTCGGAATACAAAGATAAGAATGTTCTTGTGGTCGAAGATATAATTGACACAGGAAAAACAATAACGAAACTCATAAGCCATTTGGATAGTTTGTCTACGAAAAGTGTTAAAGTCGCAAGCCTCCTCGTCAAGCGAACATCGCCCAGAAATGATTACCGACCAGACTTTGTTGGTTTTGAAGTTCCAAATCGATTTGTCGTTGGCTATGCTTTAGACTATAATGATAATTTCCG TGACCTGCNACATATTTGCGTGA TTAATGAAGTGGGTCAAAANAAA TCTCTGTA CCTGTACATCAAAACtg ]
[+] EMBL AI067160 [ TGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAGTTATGTTAATGATGTCAGTATTCATGAACCTATATTAACTGGTTTAGGAGATCCTTCGGAATACAAAGATAAGAATGTTCTTGTGGTCGAAGATATAATTGACACAGGAAAAACAATAACGAAACTCATAAGCCATTTGGATAGTTTGTCTACGAAAAGTGTTAAAGTCGCAAGCCTCCTCGTCAAGCGAACATCGCCCAGAAATGATTACCGACCAGACTTTGTTGGTTTTGAAGTTCCAAATCGATTTGTCGTTGGCTATGCTTTANACTATAATGATAATTTCCGTTGACCTGCACCATATTTGCGTGATTTAATGAAGTGG ]
[+] EMBL CD160739 [ tggaaggGGTTTAGGAGATCCTTCGGAATACAAAGATAAGAATGTTCTTGTGGTCGAAGATATAATTGACACAGGAAAAACAATAACGAAATTCATAAGCCATTTGGATAGTTTGTCTACGAAAAGTGTTAAAGTCGCAAGCCTCCTCGTCAAGCGAACATCGCCCAGAAATGATTACCGACCAGACTTTGTTGGTTTTGAAGTTCCAAATCGATTTGTCGTTGGCTATGCTTTAGACTATAATGATAATTTCCG TGACCTGCACCATATTTGCGTGA TTAATGAAGTGGGTCAAAAAAAATTCTCTGTACCCTGTACATCAAAACCTGTTTAAATGTTTT TTAGTTGAGATAAT AACAAGAAACTAAATAAATACAGAAACAGAATTTCCTTCAAAATGGTCATTCTGTAAATAATTAATCAATATCACAGCCAAAAAAATATTTAACACTTCGTTGTTCTCTTCCAACTTCTTCTATACTTTTGTTATCCTATCTATACTATCTATACTACATATACTATGCTATCTATCCTATCTATATACTATACTATCGTTAGTCTATACTTGTATAATCAACATATCTTCAATAAGATATGTATTATTATCAACGAAACTGATNNTTCCATATCTATATATA ]
[-] EMBL CD126140 [ TGATTACCGACCAGACTTTGTTGGTTTTGAAGTTCCAAATCGATTTGTCGTTGGCTATGCTTTAGACTATCATGATAATTTCCG TGACCTGCACCATATTTGCGTGA TTAATGAAGTGGGTCATACAATATTCTCTGTACCCTGTACATCAAAACCTGTTTAAATATTTTATTAGTTGAGATAATCAACGAGAAACTAAATAAATACAGAAACAGAATTTCCTTC ATATGGTCATTCTGTAAATAAT ATCAATATCACA ]
[-] EMBL CD126073 [ TGATTACCGACCAGACTTTGTTGGTTTTGAAGTTCCAAATCGATTTGTCGTTGGCTATGCTTTAGACTATAATGATAATTTCCG TGACCTGCACCATATTTGCGTGA TTAATGAAGTGGGTCAAAAAAAATTCTCTGTACCCTGTACATCAAAACCTGTTTAAATGTTTT TTAGTTGAGATAAT AACAAGAAACTAAATAAATACAGAAACAGAATTTCCTTCAAAATGGTCATTCTGCAAATAATTAATCAATATCACAGCCAAAAAAATATTTAACACTTCGTTGTTCTCTTCCAACTTCTTCTATACTTTTGTTATCCTATCTATAC AT TATACT ]
[+] EMBL CD062765 [ CGACCAGACTTTGTTGGCTTTGAAGTTCCAAATCGATTTGTAGATGGCTATGCTTTAGACTATAATGATAATTTCCG TGACCTGCACCATATTTGCGTGA ATAATGAAGTGGGTCAAAAAAAATTCTCTGTACCCTGTACATCAAAACCTGTCTAAATGTTTT TTAGTTGA ]
[-] EMBL CD185275 [ ATATTTGCGTGA TTAATGAAGTGGGTCAAAAAAAATTCTCTGTACCCTGTACATCAAAACCTGTTTAAATGTTTT TTAGTTGAGATAAT AACAAGAAACTAAATAAATACAGAAACAGAATTTCCTTCAAAATGGTCATTCTGTAAATAATTAATCAAT ]
[-] EMBL CD185247 [ ATATTTGCGTGA TTAATGAAGTGGGTCAAAAAAAATTCTCTGTACCCTGTACATCAAAACCTGTTTAAATGTTTT TTAGTTGAGATAAT AACAAGAAACTAAATAAATACAGAAACAGAATTTCCTTCAAAATGGTCATTCTGTAAATAATTAATCAAT ]
[-] EMBL CD179145 [ TGA TTAATGAAGTGGGTCAAAAAAAATTCTCTGTACCCTGTACATCAAAACCTGTTTAAATGTTTT TTAGTTGAGATAAT AACAAGAAACTAAATAAATACAGAAACAGAATTTCCTTCAAAATGGTCATTCTGTAAATAATTAATCAATATCACAGCCAAAAAAATATTTAACACTTCGTTGTTCTCTCCCAACTTCTTCTATACTTTTGTTATCCTATCTATACTATCTATACTACATATACTATGCTATCTATCCTATCTATATACTATACTATCGTTAGTCTATACTTGTATAATCAACATATCTCCAATAAGATATGTATTATTATCAACGAAACTGATTTTTCCATATCTATATATATTCTTAACTTATTTCTTTTTTTTATATTTTATTTCTAAGATCATATTTGGCACACAAATGTTTTTCTTTCTTTTTTCTCTTTTTTTCT ]
consensusID : consensus_11149#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 887 fasta sequence
[CTACAGGCCAANAATTTGGCACGAGGGCCATTTGGATAGTTTGTCTACGAAAAGTGTTAAAGTCGCAAGCCTCCTCGTCAAGCGAACATCGCCCAGAAATGATTACCGACCAGACTTTGTTGGTTTTGAAGTTCCAAATCGATTTGTCGTTGGCTATGCTTTAGACTATAATGATAATTTCCGTGACCTGCACCATATTTGCGTGATTAATGAAGTGGGTCAAAAAAAATTCTCTGTACCCTGTACATCAAAACCTGTTTAAATGTTTTTTAGTTGAGATAATAACAAGAAACTAAATAAATACAGAAACAGAATTTCCTTCAAAATGGTCATTCTGTAAATAATTAATCAATATCACAGCCAAAAAAATATTTAACACTTCGTTGTTCTCTTCCAACTTCTTCTATACTTTTGTTATCCTATCTATACTATCTATACTACATATACTATGCTATCTATCCTATCTATATACTATACTATCGTTAGTCTATACTTGTATAATCAACATATCTTCAATAAGATATGTATTATTATCAACGAAACTGATTTTTCCATATCTATATATATTCTTAACTTATTTCTTTTTTTTATATTTTATTTCTAAGATCATATTTGGCACACAAATGTTTTTCTTTCTTTTTTCTCTTTTTTTCTTGTTTTACTCCTTTCATTTCCGTTGATCAATTGATTAATCAATTTAATTGATTATTATTACACTTCTTATACTTCCTTCCCCTCCCCCACTTCTATCATCANAATAAATGTTTCTCATAAGAAGATTCTATGTTGTATGATTGACCAAAAACAAAAAAACATTNTCAATATGATCATTAATTCTAGNGTATTATTACTTATAAAATATNNNTAGTATTATGGTATAATAAACT]
[+] EMBL CD080818 [CTACAGGCCAANAATTTGGCACGAGGGCCATTTGGATAGTTTGTCTACGAAAAGTGTTAAAGTCGCAAGCCTCCTCGTCAAGCGAACATCGCCCAGAAATGATTACCGACCAGACTTTGTTGGTTTTGAAGTTCCAAATCGATTTGTCGTTGGCTATGCTTTAGACTATAATGATAATTTCCGTGACCTGCACCATATTTGCGTGATTAATGAAGTGGGTCAAAAAAAATTCTCTGTACCCTGTACATCAAAACCTGTTTAAATGTTTTTTAGTTGAGATAATAACAAGAAACTAAATAAATACAGAAACAGAATTTCCTTCAAAATGGTCATTCTGTAAATAATTAATCAATATCACAGCCAAAAAAATATTTAACACTTCGTTGTTCTCTTCCAACTTCTTCTATACTTTTGTTATCCTATCTATACTATCTATACTACATATACTATGCTATCTATCCTATCTATATACTATACTATCGTTAGTCTATACTTGTATAATCAACATATCTTCAATAAGATATGTATTATTATCAACGAAACTGATTTTTCCATATCTATATATATTCTTAACTTATTTCTTTTTTTTATATTTTATTTCTAAGATCATATTTGGCACACAAATGTTTTTCTTTCTTTTTTCTCTTTTTTTCTTGTTTTACTCCTTTCATTTCCGTTGATCAATTGATTAATCAATTTAATTGATTATTATTACACTTCTTATACTTCCTTCCCCTCCCCCACTTCTATCATCANAATAAATGTTTCTCATAAGAAGATTCTATGTTGTATGATTGACCAAAAACAAAAAAACATTNTCAATATGATCATTAATTCTAGNGTATTATTACTTATAAAATATNNNTAGTATTATGGTATAATAAACT]
consensusID : consensus_11149#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 352 fasta sequence
[TATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAGTTATGTTAATGATGTCAGTATTCATGAACCTATATTAACTGGTTTAGGAGATCCTTCGGAATACAAAGATAAGGTATTTTCCAACCTAATGATAATTTTTGTAAGAATGTTCTTGTGGTCGAAGATATAATTGACACAGGAAAAACAATAACGAAACTCATAAGCCATTTGGATAGTTTGTCTACGAAAAGTGTTAAAGTCGCAAGGTATGTTTTGTAATATTTCCATCTTT]
[+] EMBL CD192817 [TATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAGTTATGTTAATGATGTCAGTATTCATGAACCTATATTAACTGGTTTAGGAGATCCTTCGGAATACAAAGATAAGGTATTTTCCAACCTAATGATAATTTTTGTAAGAATGTTCTTGTGGTCGAAGATATAATTGACACAGGAAAAACAATAACGAAACTCATAAGCCATTTGGATAGTTTGTCTACGAAAAGTGTTAAAGTCGCAAGGTATGTTTTGTAATATTTCCATCTTT]
[+] EMBL CD192564 [TATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTTCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAGTTACGTTAATGATGTCAGTATTCATGAACCTATATTAACTGGTTTAGGAGATCCTTCGGAATACAAAGATAAGGTATTTTCCAACCTAATGATAATTTTTGTAAGAATGTTCTTGTGGTCGAAGATATAATTGACACAGGAAAAACAATAACGAAACTCATAAGCCGTTTGGATAGTTTGTCTACGAAAAGTGTTAAAGTCTCAAGGTATGTTTTGTAATATTTCCATCTTT]
[+] EMBL CD192377 [TATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAGTTATGTTAATGATGTCAGTATTCATGAACCTATATTAACTGGTTTAGGAGATCCTTCGGAATACAAAGATAAGGTATTTTCCAACCTAATGATAATTTTTGTAAGAATGTTCTTGTGGTCGAAGATATAATTGACACAGGAAAAACAATAACGAAACTCATAAGCCATTTGGATAGTTTGTCTACGAAAAGTGTTAAAGTCGCAAGGTATGTTTTGTAATATTTCCATCTTT]
[+] EMBL CD192563 [TATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCTTCCTACCAATGTC ]
[+] EMBL CD191949 [TATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAG ]
[+] EMBL CD192083 [TATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTCCGTGTCAAGAG ]
[+] EMBL CD191945 [TATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAG ]
[+] EMBL CD192502 [TATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAG ]
[+] EMBL CD192477 [TATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAG ]
[+] EMBL CD192410 [TATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAG ]
[+] EMBL CD192409 [TATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAG ]
[+] EMBL CD192156 [TATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAG ]
[+] EMBL CD192519 [TATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAG ]
[+] EMBL CD192141 [TATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAG ]
[+] EMBL CD191971 [TATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAG ]
[+] EMBL CD192076 [TATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAG ]
[+] EMBL CD192062 [TATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAG ]
[+] EMBL AI067044 [ TGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAGTTATGTTAATGATGTCAGTATTCATGAACCTATATTAACTGGTTTAGGAGATCCT ]
consensusID : consensus_11149#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 280 fasta sequence
[ATGGTCATGCTGTAAATCATTCATCAATATCACAGCCAAAAATATATTTAACACTTCGTTGTTCTCTTCCAACTTCTTCTATACTTTTGTTATCCTATCTATACTATCTATACTACATATACTATGCTATCTATGCTATCTATGATACTGTACTGATCAGTTAGTCTGATACTTGTATAAGTCGTCATATCTTCGATAAGATATGTATTATTATCTAACGTTACTGCATTTTTCCAGTATCTATCATATAGTTCTGTAGACTTGAGTATCTTATTTTTTT]
[+] EMBL AI395848 [ATGGTCATGCTGTAAATCATTCATCAATATCACAGCCAAAAATATATTTAACACTTCGTTGTTCTCTTCCAACTTCTTCTATACTTTTGTTATCCTATCTATACTATCTATACTACATATACTATGCTATCTATGCTATCTATGATACTGTACTGATCAGTTAGTCTGATACTTGTATAAGTCGTCATATCTTCGATAAGATATGTATTATTATCTAACGTTACTGCATTTTTCCAGTATCTATCATATAGTTCTGTAGACTTGAGTATCTTATTTTTTT]
consensusID : consensus_11149#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 162 fasta sequence
[ATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAGTTATGTTGTACGTTAATAAATAAAACATAATTTATCCGAAATT]
[-] EMBL CD192652 [ATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTGAGTTTGTTCGTGTCAAGAGTTATGTTGTACGTTAATAAATAAAACATAATTTATCCGAAATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11149#1 ------------------------------------------------------------
consensus_11149#3 ------------------------------------------------------------
consensus_11149#0 ACTCCTCTGTCCTTGATAACGGCAACCATTCAAACCCTCAGATCCGCGACATGTCTAGTA 60
consensus_11149#2 ------------------------------------------------------------
consensus_11149#4 ------------------------------------------------------------
consensus_11149#1 ------------------------------------------------------------
consensus_11149#3 ------------------------------------------------------------
consensus_11149#0 ACATGATAAAAGCTGACTGTGTTGTGATAGAAGACAGTTTTCGAGGATTTCCTACGGAGT 120
consensus_11149#2 ------------------------------------------------------------
consensus_11149#4 ------------------------------------------------------------
consensus_11149#1 ------------------------------------------------------------
consensus_11149#3 ------------------------------------------------------------
consensus_11149#0 ATTTCTGCACATCTCCTCGGTATGACGAATGCTTGGATTATGTTCTCATACCAAATGGTA 180
consensus_11149#2 ------------------------------------------------------------
consensus_11149#4 ------------------------------------------------------------
consensus_11149#1 ------------------------------------------------------------
consensus_11149#3 ------------------------------------------------------------
consensus_11149#0 TGATAAAAGATAGGCTTGAAAAAATGTCAATGGATATTGTTGACTATTACGAGGCCTGTA 240
consensus_11149#2 ------------------------------------------------------------
consensus_11149#4 ------------------------------------------------------------
consensus_11149#1 ------------------------------------------------------------
consensus_11149#3 ------------------------------------------------------------
consensus_11149#0 ATGCGACATCGATCACACTTATGTGTGTCCTCAAAGGTGGATTTAAATTCCTTGCTGATC 300
consensus_11149#2 ------------------------------------------------------------
consensus_11149#4 ------------------------------------------------------------
consensus_11149#1 ------------------------------------------------------------
consensus_11149#3 ------------------------------------------------------------
consensus_11149#0 TTGTTGATGGGCTTGAACGCACTGTCCGTGCTCGAGGTATCGTCCTACCAATGTCCGTTG 360
consensus_11149#2 ------------------------------------------------------------
consensus_11149#4 ------------------------------------------------------------
consensus_11149#1 ------------------------------------------------------------
consensus_11149#3 ------------------------------------------------------------
consensus_11149#0 AGTTTGTTCGTGTCAAGAGTTATGTTAATGATGTCAGTATTCATGAACCTATATTAACTG 420
consensus_11149#2 ------------------------------------------------------------
consensus_11149#4 ------------------------------------------------------------
consensus_11149#1 ------------------------------------------------------------
consensus_11149#3 ------------------------------------------------------------
consensus_11149#0 GTTTAGGAGATCCTTCGGAATACAAAGATAAGAATGTTCTTGTGGTCGAAGATATAATTG 480
consensus_11149#2 ------------------------------------------------------------
consensus_11149#4 ------------------------------------------------------------
consensus_11149#1 ----CTACAGGCCAANAATTTGGCACGAGGGCCATTTGGATAGTTTGTCTACGAAAAGTG 56
consensus_11149#3 ------------------------------------------------------------
consensus_11149#0 ACACAGGAAAAACAATAACGAAACTCATAAGCCATTTGGATAGTTTGTCTACGAAAAGTG 540
consensus_11149#2 ------------------------------------------------------------
consensus_11149#4 ------------------------------------------------------------
consensus_11149#1 TTAAAGTCGCAAGCCTCCTCGTCAAGCGAACATCGCCCAGAAATGATTACCGACCAGACT 116
consensus_11149#3 ------------------------------------------------------------
consensus_11149#0 TTAAAGTCGCAAGCCTCCTCGTCAAGCGAACATCGCCCAGAAATGATTACCGACCAGACT 600
consensus_11149#2 ------------------------------------------------------------
consensus_11149#4 ------------------------------------------------------------
consensus_11149#1 TTGTTGGTTTTGAAGTTCCAAATCGATTTGTCGTTGGCTATGCTTTAGACTATAATGATA 176
consensus_11149#3 ------------------------------------------------------------
consensus_11149#0 TTGTTGGTTTTGAAGTTCCAAATCGATTTGTCGTTGGCTATGCTTTAGACTATAATGATA 660
consensus_11149#2 ------------------------------------------------------------
consensus_11149#4 ------------------------------------------------------------
consensus_11149#1 ATTTCCGTGACCTGCACCATATTTGCGTGATTAATGAAGTGGGTCAAAAAAAATTCTCTG 236
consensus_11149#3 ------------------------------------------------------------
consensus_11149#0 ATTTCCGTGACCTGCACCATATTTGCGTGATTAATGAAGTGGGTCAAAAAAAATTCTCTG 720
consensus_11149#2 ------------------------------------------------------------
consensus_11149#4 ------------------------------------------------------------
consensus_11149#1 TACCCTGTACATCAAAACCTGTTTAAATGTTTTTTAGTTGAGATAATAACAAGAAACTAA 296
consensus_11149#3 ------------------------------------------------------------
consensus_11149#0 TACCCTGTACATCAAAACCTGTTTAAATGTTTTTTAGTTGAGATAATAACAAGAAACTAA 780
consensus_11149#2 ------------------------------------------------------------
consensus_11149#4 ------------------------------------------------------------
consensus_11149#1 ATAAATACAGAAACAGAATTTCCTTCAAAATGGTCATTCTGTAAATAATTAATCAATATC 356
consensus_11149#3 -----------------------------ATGGTCATGCTGTAAATCATTCATCAATATC 31
consensus_11149#0 ATAAATACAGAAACAGAATTTCCTTCAAAATGGTCATTCTGTAAATAATTAATCAATATC 840
consensus_11149#2 --------------------------------------------------TATGTGTGTC 10
consensus_11149#4 ---------------------------------------------------ATGTGTGTC 9
** * **
consensus_11149#1 ACAGCCAAAAAAATATTTAA-CACTTCGTTGTTCTCTTCCAACTTCTTCTATACTTTTGT 415
consensus_11149#3 ACAGCCAAAAATATATTTAA-CACTTCGTTGTTCTCTTCCAACTTCTTCTATACTTTTGT 90
consensus_11149#0 ACAGCCAAAAAAATATTTAA-CACTTCGTTGTTCTCTTCCAACTTCTTCTATACTTTTGT 899
consensus_11149#2 C---TCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTC 67
consensus_11149#4 C---TCAAAGGTGGATTTAAATTCCTTGCTGATCTTGTTGATGGGCTTGAACGCACTGTC 66
**** ****** * * * ** *** * * *** * * *
consensus_11149#1 TATCCTATCTATACTATCTATACTACATATACTATGCTATCTATCCTATCTAT-ATACTA 474
consensus_11149#3 TATCCTATCTATACTATCTATACTACATATACTATGCTATCTATGCTATCTATGATACTG 150
consensus_11149#0 TATCCTATCTATACTATCTATACTACATATACTATGCTATCTATCCTATCTAT-ATACTA 958
consensus_11149#2 CGTGCTCGAGGTATCGTCC-TACCA-ATGTCCGTTGAGTTTGTTCGTGTCAAGAGTTATG 125
consensus_11149#4 CGTGCTCGAGGTATCGTCC-TACCA-ATGTCCGTTGAGTTTGTTCGTGTCAAGAGTTATG 124
* ** ** ** *** * ** * * ** * * * ** * * *
consensus_11149#1 TACT-ATC-GTTAGTCT-ATACTTGTATAA-TCAACATATCTTCAATAAGATATGTATTA 530
consensus_11149#3 TACTGATCAGTTAGTCTGATACTTGTATAAGTCGTCATATCTTCGATAAGATATGTATTA 210
consensus_11149#0 TACT-ATC-GTTAGTCT-ATACTTGTATAA-TCAACATATCTTCAATAAGATATGTATTA 1014
consensus_11149#2 TTAATGAT-GTCAGTAT-TCATGAACCTATATTAACTGGTTTAGGAGATCCTTCGGAATA 183
consensus_11149#4 TTGT--AC-GTTAATAA-ATA-AAACATAATTTATCCGAAATT----------------- 162
* ** * * * ** * * *
consensus_11149#1 TTATC-AACGAAACTG-ATTTTTCCA-TATCTAT-ATATATTCTTAACTTATTTCTTTTT 586
consensus_11149#3 TTATCTAACGTTACTGCATTTTTCCAGTATCTATCATATAGTTCTG-TAGACTTGAGTAT 269
consensus_11149#0 TTATC-AACGAAACTG-ATTTTTCCA-TATCTAT-ATATATTCTTAACTTATTTCTTTTT 1070
consensus_11149#2 CAAAGATAAGGTATTTTCCAACCTAATGATAATTTTTGTAAGAATGTTCTTGTGGTCGAA 243
consensus_11149#4 ------------------------------------------------------------
consensus_11149#1 TTTATATTTTATTTCTAAGATCATATTTGGCACACAAATGTTTTTCTTTCTTTTTTCTCT 646
consensus_11149#3 CTTATTTTTTT------------------------------------------------- 280
consensus_11149#0 TTTATATTTTATTTCTAAGATCATATTTGGCACACAAATGTTTTTCTTTCTTTTTTCTCT 1130
consensus_11149#2 GATATAATTGACACAGGAAAAACAATAACGAAACTCATAAGCCATTTGGATAGTTTGTCT 303
consensus_11149#4 ------------------------------------------------------------
consensus_11149#1 TTTTTTCTTGTTTTACTCCTTTCATTTCCGTTGATCAATTGATTAATCAATTTAATTGAT 706
consensus_11149#3 ------------------------------------------------------------
consensus_11149#0 TTTTTTCTTGTTTTACTCCTTTCATTTCCGTTGATCAATTGATTAATCAATTTAATTGAT 1190
consensus_11149#2 ACGAAAAGTGTTAAAGTCGCAAGGTATGTTTTGTAATATTTCCATCTTT----------- 352
consensus_11149#4 ------------------------------------------------------------
consensus_11149#1 TATTATTACACTTCTTATACTTCCTTCCCCTCCCCCA-CTTCTATCATCANAATAAA--- 762
consensus_11149#3 ------------------------------------------------------------
consensus_11149#0 TATTATTACACTTCTTATACTTCCTTCCCCTCCCCCAACTTCTATCATCAAAATAAAATG 1250
consensus_11149#2 ------------------------------------------------------------
consensus_11149#4 ------------------------------------------------------------
consensus_11149#1 -TGTTTCTCATAAGAAGATTCTATGTTGTATGATTGACCAAAAA-CAAAAAAACATTNTC 820
consensus_11149#3 ------------------------------------------------------------
consensus_11149#0 TTTCTTCATAAGAAAGATTCTAATGTTGTATGATTGACCAAAAAACAAAAAAAAACATTT 1310
consensus_11149#2 ------------------------------------------------------------
consensus_11149#4 ------------------------------------------------------------
consensus_11149#1 AATATGATCATTAATTCTAGNGTATTATTACTTATAAAATATNNNTAGTATTATGGTATA 880
consensus_11149#3 ------------------------------------------------------------
consensus_11149#0 TTCAATAATGATCATTAATTTCTAGTGTTATTTATTACTTATTAAAAATATTTTTTAGTA 1370
consensus_11149#2 ------------------------------------------------------------
consensus_11149#4 ------------------------------------------------------------
consensus_11149#1 ATAAACT---------------------------- 887
consensus_11149#3 -----------------------------------
consensus_11149#0 TTATTGTTATTAATAAAACTAAAATCGAAGAAAAA 1405
consensus_11149#2 -----------------------------------
consensus_11149#4 -----------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||