cluster # 11160

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Schistosoma mansoni
cluster # 11160 cluster # 11160 Sequences # 36 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11160#0 length = 789 sequences # 22

consensus_11160#1 length = 740 sequences # 14

consensusID : consensus_11160#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 22
consensus length = 789
fasta sequence

                              [CCGAGCGGCCGCGACAAGTTTTTTTTTTTTTTTTTNTTAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTNNNNNGTTTTTCCGGGGTTAGCTAAATTTTATTCAATTAGCTTCAATAGATTCTTTACTGGATACATATATACCATCAAGAAATTTACGGATATCCTTGTGTCGAACCCTGCAGGACTGTTGAACAAGGGCAGCACATTTTGCGACCTTTTCAATATCATTGCCCTCAATTTGAATTTCATCTTTCACTCCAGTGGCTGAGACTTTTA-CACCTGATTCCATAGGTACAATCTTGGTCGCTTTTT-CTCCTAAAAAGTTGCGGATCTCCAACTTGGAACCGTCGTTGGCTGGAATCATGTTGATGGGGAAGTGGGCATAAACGGACTTTAATTTATAACGATACCCAGATGTAACACCTTTTATCATATTTCCAATATGGGAGCAGACTGTCCGGACAGCAGCTAGCTCCTTTCTGTTG-CCAAAAAACTTTGTAACAACAATCCTTTTCGAGAAAACTTTGATGTCTAGGGACAAATGACCGAAGTCACGTTTCAGTGATCCACGAGGACCTTTGACGTAAACCACTCTTTT-AATGGCTTTTACTTTTATGCCTT-GAGGCACATT-CACAGTTTCAGACGACT-TTATAATCTTCATTATGTGTAAAGGCAGAAAAGAATGAAGGTAACAAATAAGGGATATCGCAAATCGTATTCCGTCTCAAACACACGCGCCGCAACTGCAACAACCGCCACAATTATCCAGGTCGG]

[-] EMBL CD149060             [CCGAGCGGCCGCGACAAGTTTTTTTTTTTTTTTTTNTTAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTNNNNNGTTTTTCCGGGGTTAGCTAAATTTTATTCAATTAGCTTCAATAGATTCTTTACTGGATACATATATATCATCAAGAAATTTACGGATATCCTTGTGTCGAACCCTGCAGGACTGTTGAACAAGGGCAGCACATTTTGCGACCTTTTCAATATCATTGCCCTCAATTTGAATTTCATCTTTCACTCCAGTGGCTGAGACTTTTA CACCTGATTCCATAGGTACAATCTTGGTCGCTTTTT CTCCTAAAAAGTTGCGGATCTCCAACTTGGAACCGTCGTTGGCTGGAATCATGTTGATGGGGAAGTGGGCATAAACGGACTTTAATTTATAACGATACCCAGATGTAACACCTTTTATCATATTT                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD076529             [                                                                                                       GCTAAATTTTATTCAATTAGCTTCAATAGATTCTTTACTGGATACATATATACCATCAAGAAATTTACGGATATCCTTGTGTCGAACCCTGCAGGACTGTTGAACAAGGGCAGCACATTTTGCGACCTTTTCAATATCATTGCCCTCAATTTGAATTTCATCTTTCACTCCAGTGGCTGAGACTTTTA CACCTGATTCCATAGGTACAATCTTGGTCGCTTTTT CTCCTAAAAAGTTGCGGATCTCCAACTTGGAACCGTCGTTGGCTGGAATCATGTTGATGGGGAAGTGGGCATAAACGGACTTTAATTTATAACGATACCCAGATGTAACACCTTTTATCATATTTCCAATATGGGAGCAGACTGTCCGGACAGCAGCTAGCTCCTTTCTGTTG CCAAAAAACTTTGTAACAACAATCCTTTTCGAGAAAACTTTGATGTCTAGGGACAAATGACCGAAGTCACGTTTCAGTGATCCACGAGGACCTTTGACGTAAACCACTCTTTT AATGGCTTTTACTTTTATGCCTT GAGGCACATT CACAGTTTCAGACGACT TTATAATCTTCATTATGTGTAAgg                                                                                                      ]
[-] EMBL AI976869             [                                                                                                        CTAAATTTTATTCAATTAGCTTCAATAGATTCTTTACTGGATACATATATACCATCAAGAAATTTACGGATATCCTTGTGTCGAACCCTGCAGGACTGTTGAACAAGGGCAGCACATTTTGCGACCTTTTCAATATCATTGCCCTCAATTTGAATTTCATCTTTCACTCCAGTGGCTGAGACTTTTA CACCTGATTCCATAGGTACAATCTTGGTCGCTTTTT CTCCTAAAAAGTTGCGGATCTCCAACTTGGAACCGTCGTTGGCTGGAATCATGTTGATGGGGAAGTGGGCATAAACGGACTTTAATTTATAACGATACCCAGATGTAACACCTTTTATCATATTTCCAATATGGGAGCAGACTGTCCGGACAGCAGCTAGCTCCTTTCTGTTG CCAAAAAACTTTGTAACAACAATCCTTTTCGAGAAA                                                                                                                                                                                                                                                                 ]
[+] EMBL CD132715             [                                                                                                           AATTTTATTCAATTAGCTTCAATAGATTCTTTACTGGATACATATATACCATCAAGAAATTTACGGATATCCTTGTGTCGAACCCTGCAGGACTGTTGAACAAGGGCAGCACATTTTGCGACCTTTTCAATATCATTGCCCTCAATTTGAATTTCATCTTTCACTCCAGTGGCTGAGACTTTTA CACCTGATTCCATAGGTACAATCTTGGTCGCTTTTT CTCCTAAAAAGTTGCGGATCTCCAACTTGGAACCGTCGTTGGCTGGAATCATGTTGATGGGGAAGTGGGCATAAACGGACTTTAATTTATAACGATACCCAGATGTAACACCTTTTATCATATTTCCAATATGGGAGCAGACTGTCCGGACAGCAGCTAGCTCCTTTCTGTTG CCAAAAAACTTTGTAACAACAATCCTTTTCGAGAAAACTTTGATGTCTAGGGACAAATGACCGAAGTCACGTTTCAGTGATCCACGAGGACCTTTGACGTANACCACTCTTTTAAATGGC TTTACTTTTATGCCTTNGA GCACATT CACAGTTTCAGACGACTNNTAT ATCT                                                                                                                     ]
[-] EMBL CD133107             [                                                                                                                                                          ACCATCAAGAAATTTACGGATATCCTTGTGTCGAACCCTGCAGGACTGTTGAACAAGGGCAGCACATTTTGCGACCTTTTCAATATCATTGCCCTCAATTTGAATTTCATCTTTCACTCCAGTGGCTGAGACTTTTA CACCTGATTCCATAGGTACAATCTTGGTCGCTTTTT CTCCTAAAAAGTTGCGGATCTCCAACTTGGAACCGTCGTTGGCTGGAATCATGTTGATGGGGAAGTGGGCATAAACGGACTTTAATTTATAACGATACCCAGATGTAACACCTTTTATCATATTTCCAATATGGGAGCAGACTGTCCGGACAGCAGCTAGCTCCTTTCTGTTG CCAAAAAACTTTGTAACAACAATCCTTTTCGAGAAAACTTTGATGTCTAGGGACAAATGACCGAAGTCAC                                                                                                                                                                                                                               ]
[-] EMBL CD142069             [                                                                                                                                                                                                                                                        TCAATNTGAATTTCATCTTTCACTCCAGTGGCTGAGACTTTTA CACCTGATTCCATAGGTACAATCTTGGTCGCTTTTT CTCCTAAAAAGTTGCGGATCTCCAACTTGGAACCGTCGTTGGCTGGAATCATGTTGATGGGGAAGTGGGCATAAACGGACTTTAATTTATAACGATACCCAGATGTAACACCTTTTATCATATTTCCAATATGGGAGCAGACTGTCCGGACAGCAGCTAGCTCCTTTCTGTTG CCAAAAAACTTTGTAACAACAATCCTTTTCGAGAAAACTTTGATGTCTAGGGACAAATGACCGAAGTCACGTTTCAGTGATCCACGAGGACCTTTGACGTAAACCACTCTTTT AATGGCTTTTACTTTTATGCCTT GAGGCACATT CACAGTTTCAGACGACT TTATAATCTTCATTATGTGTAAAGGCAGAAAAGAATGAAGGTAACAAATAAGGGATATCGCAAATCGTATTCCGTCTCAAACACACGCGCCGCAACTGCAACAACCGCCA                ]
[-] EMBL CD132014             [                                                                                                                                                                                                                                                                                               TTTA CACGTGATTCCATAGGT CAATCTTGGTCGCTTTTT CTCCTAAAAAGTTGCGGATCTCCAAC TGGAACGGTCGTTGGTGGGAATCATGTTGATGGGAAAGTGGGCATAAACGGACTTTAATTTATAACGATACCCAGATGTAACACCTTTTATCATATTTCCAATATGGAAGCAGACTGTCCGGACAGCAGCTAGCTCCTTTCTGTTG CCAAAAAACTTTGTAACAACAATCCTTTTCGAGAAAACTTTGATGTCTAGGGACAAATGACCGAAGTCACGTTTCAGTGATCCACGAGAACCTTTGACGTAAACCACTCTTTT AATGGCTTTTACTTTTATGCCTT AAGGCACATT CACAGTTTCAGACGACT TTATAATCTTCATTATGTGTAAAGGCAGAAAAGAATGAAGGTAACAAATAAGGGATATCGCAAATCGTATTCCGTCTCAAACACACGCGCCGCAACTGCAACAACAGCCA                ]
[-] EMBL SM506                [                                                                                                                                                                                                                                                                                             cnTTTACCACCTGATTCCATAGGNACCATCTTGGTCGCTTTTTCCCCCTAAAAAGTTGCGGATCTCCAACTTGGAACCGTCGTTGNCTGGAATCATGTTGATGGGGAAGTGGGCATAAACGGACTTTAATTTATAACGATACCCAGATGTAACACCTTTTATCATATTTCCAATATGGGAGCAGACTGTCCGGACAGCAGCTAGCTCCTTTCTGTTGCCCAAAAAACTTTGTAACAACAATCCTTTTCGAGAAAACTTTGATGTCTAGGGACAAATGACCGAAGTCACGTTTCAGTGATCCACGAGGACCTTTGACGTAAACCACTCTTTT AATGGCTTTTACTTTTATGCCTT GAGGCACATTNCACAGTTTCAGACGACT TTATAATCTTCATTATGTGTAAAGGCAGA                                                                                                 ]
[+] EMBL CD186508             [                                                                                                                                                                                                                                                                                                TTA CACCTGATTCCATAGGTACAATCTTGGTCGCTTTTT CTCCTAAAAAGTTGCGGATCTCCAACTTGGAACCGTCGTTGGCTGGAATCATGTTGATGGGGAAGTGGGCATAAACGGACTTTAATTTATAACGATACCCAGATGTAACACCTTTTATCATATTTCCAATATGGGAGCAGACTGTCCGGACAGCAGCTAGCTCCTTTCTGTTG CCAAAAAACTTTGTAACAACAATCCTTTTCGAGAAAACTTTGATGTCTAGGGACAAATGACCGAAGTCACGTTTCAGTGATCCACGAGGACCTTTGACGTAAACCACTCTTTT AATGGCTTTTACTTTTATGCCTT GAGGCACATT CACAGTTTCAGACGACT TTATAATCTTCATTATGTGTAAAGGCAGAAAAGAATGAAGGTAACAAATAAGGGATATCACAAAT                                                             ]
[+] EMBL CD161328             [                                                                                                                                                                                                                                                                                                    CACCTGATTCCATAGGTACAATCTTGGTCGCTTTTT CTCCTAAAAAGTTGCGGATCTCCAACTTGGAACCGTCGTTGGCTGGAATCATGTTGATGGGGAAGTGGGCATAAACGGACTTTAATTTATAACGATACCCAGATGTAACACCTTTTATCATATTTCCAATATGGGAGCAGACTGTCCGGACAGCAGCTAGCTCCTTTCTGTTG CCAAAAAACTTTGTAACAACAATCCTTTTCGAGGAAACTTTGATGTCTAGGGACAAATGACCGAAGTCACGTTTCAGTGATCCACGAGGACCTTTGACGTAAACCACTCTTTT AATGGCTTTTACTTTTATGCCTT GAGGCACATT CACAGTTTCAGACGACT TTATAATCTTCATTATGTGTAAAGGCAGAAAAGAATGAAGGTAACAAATAAGGGATATCGCAAATCGTATTCCGTCTCAAACACACGCGCCGCAACTGCAACAACCGCC                 ]
[+] EMBL CD138216             [                                                                                                                                                                                                                                                                                                        TGATTCCATAGGTACAATCTTGGTCGCTTTTT CTCCTAAAAAGTTGCGGATCT GAACTTGGAACCGTCGTTGGCTGGAATCAAGTTGCGAGGGAAGTGGGCATAAACGGACTTTAATAAATAACGATACCCAGATGTAACACCTCCTATCATATTTCCAATATGGGAGCAGACTGTCCGGACAGCAGCTAGCTCCTTTCTGTTG CCAAAAAACTTTGTAACAACAATCCTTTTCGAGAAAACTTTGATGTCTAGGGACAAATGACCGAAGTCACGTTTCAGTGATCCACGAGGACCTTTGACGTAAACCACTCTTTT AATGGCTTTTACTTTTATGCCTT GAGGCACATT CACAGTTTCAGACGACT TTATAATCTTCATTATGTGTAAAGGCAAACAAGAATGAAGGTACCAAATACCGGATATCGCAAA                                                              ]
[+] EMBL CD138156             [                                                                                                                                                                                                                                                                                                        TGATTCCATAGGTACAATCTTGGTCGCTTTTT CTCCTAAAAAGTTGCGGATCTCCAACTTGGAACCGTCGTTGGCTGGAATCATGTTGATGGGGAAGTGGGCATAAACGGACTTTAATTTATAACGATACCCAGATGTAACACCTTTTATCATATTTCCAATATGGGAGCAGACTGTCCGGACAGCAGCTAGCTCCTTTCTGTTG CCAAAAAACTTTGTAACAACAATCCTTTTCGAGAAAACTTTGATGTCTAGGGACAAATGACCGAAGTCACGTTTCAGTGATCCACGAGGACCTTTGACGTAAACCACTCTTTT AATGGCTTTTACTTTTATGCCTT GAGGCACATT CACAGTTTCAGACGACT TTATAATCTTCATTATGTGTAAAGGCAGAAAAGAATGAAGGTAACANATAAGGGATATCGCAA                                                               ]
[+] EMBL CD138127             [                                                                                                                                                                                                                                                                                                        TGATTCCTTAGGTACAATCTTGGTCGCTTTTT CTCCTAAAAAGTTGCGGATCTCCAACTTGGAACCGTCGTTGGCTGGAATCATGTTGATGGGGAAGTGGGCATAAACGGACTTTAATTTATAACGATACCCAGATGTAACACCTTTTATCATATTTCCAATATGGGAGCAGACTGTCCGGACAGCAGCTAGCTCCTTTCTGTTG CCAAAAAACTTTGTAACAACAATCCTTTTCGAGAAAACTTTGATGTCTAGGGACAAATGACCGAAGTCACGTTTCAGTGATCCACGAGGACCTTTGACGTAAACCACTCTTTT AATGGCTTTTACTTTTATGCCTT GAGGCACATT CACAGTTTCAGACGACT TTATAATCTTCATTATGTGTAAAGGCAGAAAAGAATGAAGGTAACAAATAAGGGATATCGCANATTGTATTCCGTCTCAcc                                             ]
[+] EMBL CD138144             [                                                                                                                                                                                                                                                                                                        TGATTCCATAGGTACAATCTTGGTCGCTTTTT CTCCTAAAAAGTTGCGGATCTCCAACTTGGAACCGTCGTTGGCTGGAATCATGTTGATGGGGAAGTGGGCATAAACGGACTTTAATTTATAACGATACCCAGATGTAACACCTTTTATCATATTTCCAATATGGGAGCAGACTGTCCGGACAGCAGCTAGCTCCTTTCTGTTG CCAAAAAACTTTGTAACAACAATCCTTTTCGAGAAAACTTTGATGTCTAGGGACAAATGACCGAAGTCACGTTTCAGTGATCCACGAGGACCTTTGACGTAAACCACTCTTTT AATGGCTTTTACTTTTATGCCTT GAGGCACATT CACAGTTTCAGACGACT TTATAATCTTCATTATGTGTAAAGGCAGAAAAGAATGAAGGTAACAAATAAGGGATATCGCAA                                                               ]
[+] EMBL CD138186             [                                                                                                                                                                                                                                                                                                        TGATTCCATAGGTACAATCTTGGTCGCTTTTT CTCCTAAAAAGTTGCGGATCTCCAACTTGGAACCGTCGTTGGCTGGAATCATGTTGATGGGGAAGTGGGCATAAACGGACTTTAATTTATAACGATACCCAGATGTAACACCTTTTATCATATTTCCAATATGGGAGCAGACTGTCCGGACAGCAGCTAGCTCCTTTCTGTTG CCAAAAAACTTTGTAACAACAATCCTTTTCGAGAAAACTTTGATGTCTAGGGACAAATGACCGAAGTCACGTTTCAGTGATCCACGACGACCTTTGACGTAAACCACTCTTTT AATGGCTTTTACTTTTATGCCTT GAGGCACATT CACAGTTTCAGACGAC                                                                                                                                ]
[-] EMBL CD138112             [                                                                                                                                                                                                                                                                                                         GATTCCATAGGTACAATCTTGGTCGCTTTTT CTCCTAAAAAGTTGCGGATCTCCAACTTGGAACCGTCGTTGGCTGGAATCATGTTGATGGGGAAGTGGGCATAAACGGACTTTAATTTATAACGATACCCAGATGTAACACCTTTTATCATATTTCCAATATGGGAGCAGACTGTCCGGACAGCAGCTAGCTCCTTTCTGTTG CCAAAAAACTTTGTAACAACAATCCTTTTCGAGAAAACTTTGATGTCTAGGGACAAATGACCGAAGTCACGTTTCAGTGATCCACGAGGACCTTTGACGTAAACCACTCTTTT AATGGCTTTTACCTTTATGCCTT GAGGCACATT CACAGTTTCAGACGACT TTATAATCTTCATTATGTGTAAAGGCAGAAAAGAATGAAGGTAACAAATAAGGGATATCGCAAA                                                              ]
[-] EMBL CD138086             [                                                                                                                                                                                                                                                                                                         GATTCCATAGGTACAATCTTGGTCGCTTTTT CTCCTAAAAAGTTGCGGATCTCCAACTTGGAACCGTCGTTGGCTGGAATCATGTTGATGGGGAAGTGGGCATAAACGGACCTTAATTTATAACGATACCCAGATGTAACACCTTTTATCATATTTCCAATATGGGAGCAGACTGTCCGGACAGCAGCTAGCTCCTTTCTGTTG CCAAAAAACTTTGTAACAACAATCCTTTTCGAGAAAACTTTGATGTCTAGGGACAAATGACCGAAGTCACGTTTCAGTGATCCACGAGGACCTTTGACGTAAACCACTCTTTT AATGGCTTTTACTTTTATGCCTT GAGGCACATT CACAGTTTCAGACGACT TTATAATCTTCATTATGTATAAAGGCAGAAAAGAATGAAGGTAACAAATAAGGGATATCGCAAA                                                              ]
[+] EMBL CD147953             [                                                                                                                                                                                                                                                                                                                                         CTCCTAAAAAGTTGCGGATCTCCAACTTGGAACCGTCGTTGGCTGGAATCATGTTGATGGGGAAGTGGGCATAAACGGACTTTAATTTATAACGATACCCAGATGTAACACCTTTTATCATATTTCCAATATGGGAGCAGACTGTCCGGACAGCAGCTAGCTCCTTTCTGTTG CCAAAAAACTTTGTAACAACAATCCTTTTCGAGAAAACTTTGATGTCTAGGGACAAATGACCGAAGTCACGTTTCAGTGATCCACGAGGACCTTTGACGTAAACCACTCTTTT AATGGCTTTTACTTTTATGCCTT GAGGCACATT CACAGTTTCAGACGACT TTATAATCTTCATTATGTGTAAAGGCAGAAAAGAATGAAGGTAACAAATAAGGGATATCGCAAATCGTATTCCGTCTCAAA                                             ]
[-] EMBL CD186426             [                                                                                                                                                                                                                                                                                                                                                                                                                                 ATAACGATACCCAGATGTAACACCTTTTATCATATTTCCAATATGGGAGCAGACTGTCCGGACAGCAGCTAGCTCCTTTCTGTTG CCAAAAAACTTTGTAACAACAATCCTTTTCGAGAAAACTTTGATGTCTAGGGACAAATGACCGAAGTCACGTTTCAGTGATCCACGAGGACCTTTGACGTAAACCACTCTTTT AATGGCTTTTACTTTTATGCCTT GAGGCACATT CACAGTTTCAGACGACT TTATAATCTTCATTATGTGTAAAGGCAGAAAAGAATGAAGGTAACAAATAAGGGATATCGCAAATCGTATTCCGTCTCAAACACACGCGCCGCAACTGCAACAACCGCC                 ]
[-] EMBL CD132025             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TTTGATGTNTAGGGACAAATGACNGAAGTCACGTTTCAGTGATCCACGAGGACCTTTGACGTAAACCACTCTTTT AATGGCTTTTACTTTTATGCCTT GAGGCACATT CACAGTTTCAGACGACT TTATAATCTTCATTATGTGTAAAGGCAGAAAAGAATGAAGGTAACAAATAAGGGATATCGCAAATCGTATTCCGTCTCAAACACACGCGCCGCAACTGCAACAACCGCCA                ]
[-] EMBL CD149879             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GCACATT CACAGTTTCAGACGACT TTATAATCTTCATTATGTGTAAAGGCAGAAAAGAATGAAGGTAGCAAATAAGGGATATCGCAAATGGTATTCCGTATCAAACACACGCACCGCAATTGCAACACCCGCCA                ]
[-] EMBL CD157525             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AATTTTCATTATGTGTAAAGGCAGAAAAGAATGAAGGTAACAAATAAGGGATATCGCAAATCGTATTCCGTATCAAACACACGCGCCGCAACTGCAACAACCGCCACAATTATCCAGGTCGG]




>consensus_11160#0
CCGAGCGGCCGCGACAAGTTTTTTTTTTTTTTTTTNTTAATTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTNNTNNNNNGTTTTTCCGGGGTTAGCTAAATTTTATTCAAT
TAGCTTCAATAGATTCTTTACTGGATACATATATACCATCAAGAAATTTACGGATATCCT
TGTGTCGAACCCTGCAGGACTGTTGAACAAGGGCAGCACATTTTGCGACCTTTTCAATAT
CATTGCCCTCAATTTGAATTTCATCTTTCACTCCAGTGGCTGAGACTTTTACACCTGATT
CCATAGGTACAATCTTGGTCGCTTTTTCTCCTAAAAAGTTGCGGATCTCCAACTTGGAAC
CGTCGTTGGCTGGAATCATGTTGATGGGGAAGTGGGCATAAACGGACTTTAATTTATAAC
GATACCCAGATGTAACACCTTTTATCATATTTCCAATATGGGAGCAGACTGTCCGGACAG
CAGCTAGCTCCTTTCTGTTGCCAAAAAACTTTGTAACAACAATCCTTTTCGAGAAAACTT
TGATGTCTAGGGACAAATGACCGAAGTCACGTTTCAGTGATCCACGAGGACCTTTGACGT
AAACCACTCTTTTAATGGCTTTTACTTTTATGCCTTGAGGCACATTCACAGTTTCAGACG
ACTTTATAATCTTCATTATGTGTAAAGGCAGAAAAGAATGAAGGTAACAAATAAGGGATA
TCGCAAATCGTATTCCGTCTCAAACACACGCGCCGCAACTGCAACAACCGCCACAATTAT
CCAGGTCGG

consensusID : consensus_11160#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 14
consensus length = 740
fasta sequence

                              [ACGCATACGGTATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGGGGTTAGCTAAATTTTATTCAATTAGCTTCAATAGATTCTTTACTGGATACATATATACCATCAAGAAATTTACGGATATCCTTGTGTCGAACCCTGCAGGACTGTTGAACAAGGGCAGCACATTTTGCGACCTTTTCAATATCATTGCCCTCAATTTGAATTTCATCTTTCACTCCAGTGGCTGAGACTTTTACACCTGATTCCATAGGTACAATCTTGGTCGCTTTTTCTCCTAAAAAGTTGCGGATCTCCAACTTGGAACCGTCGTTGGCTGGAATCATGTTGATGGGGAAGTGGGCATAAACGGACTTTAATTTATAACGATACCCAGATGTAACACCTTTTATCATATTTCCAATATGGGAGCAGACTGTCCGGACAGCAGCTAGCTCCTTTCTGTTGCCAAAAAACTTTGTAACAACAATCCTTTTCGAGGAAACTTTGATGTCTAGGGACAAATGACCGAAGTCACGTTTCAGTGATCCACGAGGACCTTTGACGTAAACCACTCTTTTAATGGCTTTTACTTTTATGCCTTGAGGCACATTCACAGTTTCAGACGACTTTATAATCTTCATTATGTGTAAAGGCAGAAAAGAATGAAGGTAACAAATAAGGGATATCGCAAATCGTATTCCGTCTCAAACACACGCGCCGCAACTGCACCTCGTGCCGAATTC]

[+] EMBL BF936396             [ACGCATACGGTATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGGGGTTAGCTAAATTTTATTCAATTAGCTTCAATAGATTCTTTACTGGATACATATATACCATCAAGAAATTTACGGATATCCTTGTGTCGAACCCTGCAGGACTGTTGAACAAGGGCAGCACATTTTGCGACCTTTTCAATATCATTGCCCTCAATTTGAATCTCATCTTTCACTCCAGTGGCTGAGACTTTTACACCTGATTCCATAGGTACAATCTTGGTCGCTTTTTCCCCTAAAAAGTTGCGGATCTCCAACTTGGAACCGTCGTTGGCTGGAATCATGTTGATGGGGAAGTGGGCATAAACGGACTTTAATTTATAACGATACCCAGATGTAACACCTTTTATCATATTTCCAATATGGGAGCAGACTGTCCGGACAGCAGCTAGCTCCTTTCTGTTGCCAAAAAACTTTGTAACAACAATCCTTTTCGAGAAAACTTTGATGTCTAGGGACAAATGACCGAAGTCACGTTTCAGTGATCCACGAGGACCTTTGACGTAAACCACTCTTTTAATGGCTTTTACTTTTATGCCTTGAGGCACATTCACAGTTTCAGACGACTTT                                                                                                                 ]
[+] EMBL CD074192             [                                                                 GCTAAATTTTATTTATTTAGCTTCAATAGATTCTTTACTGGATACATATATACCATCAAGAAATTTACGGATATCCTTGTGTCGAACCCTGCAGGACTGTTGAACAAGGGCAGCACATTTTGCGACCTTTTCAATATCATTGCCCTCAATTTGAATTTCATCTTTCACTCCAGTGGCTGAGACTTTTACACCTGATTCCATAGGTACAATCTTGGTCGCTTTTTCTCCTAAAAAGTTGCGGATCTCCAACTTGGAACCGTCGTTGGCTGGAATCATGTTGATGGGGAAGTGGGCATAAACGGACTTTAATTTATAACGATACCCAGATGTAACACCTTTTATCATATTTCCAATATGGGAGCAGACTGTCCGGACAGCAGCTAGCTCCTTTCTGTTGCCAAAAAACTTTGTAACAACAATCCTTTTCGAGGAAACTTTGATGTCTAGGGACAAATGACCGAAGTCACGTTTCAGTGATCCACGAGGACCTTTGACGTAAACCACTCTTTTAATGGCTTTTACTTTTATGCCTTGAGGCACATTCACAGTTTCAGACGACTTTATAATCTTCATTATGTGTAAAGGCAGAAAAGAATGAAGGTAACAAATAAGGGATATCGCANATCGTATTCCGTC                                       ]
[-] EMBL CD080274             [                                                                  CTAATTTATTTTCAATTAGCTTCAATAGATTCTTTACTGGATACATATATACCATCAAGAAATTTACGGATATCCTTGTGTCGAACCCTGCAGGACTGTTGAACAAGGGCAGCACATTTTGCGACCTTTTCAATATCATTGCCCTCAATTTGAATTTCATCTTTCACTCCAGTGGCTGAGACTTTTACACCTGATTCCATAGGTACAATCTTGGTCGCTTTTTCTCCTAAAAAGTTGCGGATCTCCAACTTGGAACCGTCGTTGGCTGGAATCATGTTGATGGGGAAGTGGGCATAAACGGACTTTAATTTATAACGATACCCAGATGTAACACCTTTTATCATATTTCCAATATGGGAGCAGACTGTCCGGACAGCAGCTAGCTCCTTTCTGTTGCCAAAAAACTTTGTAACAACAATCCTTTTCGAGGAAACTTTGATGTCTAGGGACAAATGACCGAAGTCACGTTTCAGTGATCCACGAGGACCTTTGACGTAAACCACTCTTTTAATGGCTTTTACTTTTATGCCTTGAGGCACATTCACAGTTTCAGACGACTTTATAATCTTCATTATGTGTAAAGGCAGAAAAGAATGAAGGTAACAAATAAGGGATATCGCAAATCGTATTCCGTCTCAAACACACGCGCCGCAACTGCACCTCGTGCCGAATTC]
[-] EMBL CD139952             [                                                                                                                                                                                                                CCTCAATTTGAATTTCATCTTTCACTCCAGTGGCTGAGACTTTTACACCTGATTCCATAGGTACAATCTTGGTCGCTTTTTCTCCTAAAAAGTTGCGGATCTCCAACTTGGAACC                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD124159             [                                                                                                                                                                                                                                                  TGAGACTTTTACACCTGATTCCATAGGTACAATCTTGGTCGCTTTTTCTCCTAAAAAGTTGCGGATCTCCAACTTGGAACCGTCGTTGGCTGGAATCATGTTGATGGGGAAGTGGGCATAAACGGACTTTAATTTATAACGATACCCAGATGTAACACCTTTTATCATATTTCCAATATGGGAGCAGACTGTCCGGACAGCAGCTAGCTCCTTTCTGTTGCCAAAAAACTTTGTGACAACAATCCTTTTCGAGGAAACTTTGATGTCTAGGGACAAATGACCGAAGTCACGTTTCAGTGATCCACGAGGACCTTTGCCGTAAACCACTCTTTTAATGGCTTTTACTTTTATGCCTTGAGGCACATTCACAGTTTCAGACGACTTTATAATCTTCATTATGTGTAAAGGCAGAAAAGAATGAAGGTAACAAATAAGGGATATCGCAAA                                                   ]
[+] EMBL CD124144             [                                                                                                                                                                                                                                                 tTGAGACTTTTACACCTGATTCCATAGGTACAATCTTGGTCGCTTTTTCTCCTAAAAAGTTGCGGATCTCCAACTTGGAACCGTCGTTGGCTGGAATCATGTTGATGGGGAAGTGGGCATAAACGGACTTTAATTTATAACGATACCCAGATGTAACACCTTTTATCATATTTCCAATATGGGAGCAGACTGTCCGGACAGCAGCTAGCTCCTTTCTGTTGCCAAAAAACTTTGTAACAACAATCCTTTTCGAGGAAACTTTGATGTCTAGGGACAAATGACCGAAGTCACGTTTCAGTGATCCACGAGGACCTTTGACGTAAACCACTCTTTTAATGGCTTTTACTTTTATGCCTTGAGGCACATTCACAGTTTCAGACGACTTTATAATCTTCATTATGTGTAAAGGCAGAAAAGAATGAAGGTAACAAATAAGGGATATCGCAn                                                    ]
[+] EMBL CD124076             [                                                                                                                                                                                                                                                 tTGAGACTTTTACACCTGATTCCATAGGTACAATCTTGGTCGCTTTTTCTCCTAAAAAGTTGCGGATCTCCAACTTGGAACCGTCGTTGGCTGGAATCATGTTGATGGGGAAGTGGGCATAAACGGACTTTAATTTATAACGATACCCAGATGTAACACCTTTTATCATATTTCCAATATGGGAGCAGACTGTCCGGACAGCAGCTAGCTCCTTTCTGTTGCCAAAAAACTTTGTAACAACAATCCTTTTCGAGGAAACTTTGATGTCTAGGGACAAATGACCGAAGTCACGTTTCAGTGATCCACGAGGACCTTTGACGTAAACCACTCTTTTAATGGCTTATACTTTTATGCCTTGAGGCACATTCACAGTTTCAGACGACTTTATAATCTTCATTATGTGTAAAGGCAGAAAAGAATGAAGGTAACAAATAAGGGATATCGCAn                                                    ]
[+] EMBL CD161310             [                                                                                                                                                                                                                                                             CACCTGATTCCATAGGTACAATCTTGGTCGCTTTTTCTCCTAAAAAGTTGCGGATCTCCAACTTGGAACCGTCGTTGGCTGGAATCATGTTGATGGGGAAGTGGGCATAAACGGACTTTAATTTATAACGATACCCAGATGTAACACCTTTTATCATATTTCCAATATGGGAGCAGACTGTCCGGACAGCAGCTAGCTCCTTTCTGTTGCCAAAAAAC TTGTAACAACGATCCTTTTCGAGGAAACTTTGATGTCTAGGGACAAATGACCGAAGTCACGTTTCAGTGATCCACGAGGACCTTTGACGTAAGCCACTCTTTTAATGGCTTTTACTTTTATGCCTTGAGGCACATTCACAGTTTCAGACGACTTTATAATCTTCATTATGTGTAAAGGCAGAAAAGAATGAAGGTAACAAATAAGGGATATCGCAAATCGTACTCCGTCTCAAACACACGCGCC                        ]
[+] EMBL CD138243             [                                                                                                                                                                                                                                                                 TGATTCCATAGGTACAATCTTGGTCGCTTTTTCTCCTAAAAAGTTGCGGATCTCCAACTTGGAACCGTCGTTGGCTGGAATCATGTTGATGGGGAAGTGGGCATAAACGGACTTTAATTTATAACGATACCCAGATGTAACACCTTTTATCATATTTCCAATATGGGAGCAGACTGTCCGGACAGCAGCTAGCTCCTTTCTGTTGCCAAAAAACTTTGTAACAACAATCCTTTTCGAGGAAACTTTGATGTCTAGGGACAAATGACCGAAGTCACGTTTCAGTGATCCACGAGGACCTTTGACGTAAACCACTCTTTTAATGGCTTTTACTTTTATGCCTTGAGGCACATTCACAGTTTCAGACGACTTTATAATCTTCATTATGTGTAAAGGCAGAAAAGAATGAAGGTAACANATAAGGGATATCGCAA                                                    ]
[+] EMBL CD124073             [                                                                                                                                                                                                                                                                 TGATTCCATAGGTACAATCTTGGTCGCTTTTTCTCCTAAAAAGTTGCGGATCTCCAACTTGGAACCGTCGTTGGCTGGAATCATGTTGATGGGGAAGTGGGCATAAACGGACTTTAATTTATAACGATACCCAGATGTAACACCTTTTATCATATTTCCAATATGGGAGCAGACTGTCCGGACAGCAGCTAGCTCCTTTCCGTTGCCAAAAAACTTTGTAACAACAATCCTTTTCGAGGAAACTTTGATGTCTAGGGACAAATGACCGAAGTCACGTTTCAGTGATCCACGAGGACCTTTGACGTAAACCACTCTTTTAATGGCTTTTACTTTTATGCCTTGAGGCACATTCACAGTTTCAGACGACTTTATAATCTTCATTATGTGTAAAGGCAGAAAAGAATGAAGGTAACAAATAAGGGATATCGCAn                                                    ]
[+] EMBL CD138170             [                                                                                                                                                                                                                                                                 TGATTCCATAGGTACAATCTTGGTCGCTTTTTCTCCTAAAAAGTTGCGGATCTCCAACTTGGAACCGTCGTTGGCTGGAATCATGTTGATGGGGAAGTGGGCATAAACGGACTTTAATTTATAACGATACCCAGATGTAACACCTTTTATCATATTTCCAATATGGGAGCAGACTGTCCGGACAGCAGCTAGCTCCTTTCTGTTGCCAAAAAACTTTGTAACAACA                                                                                                                                                                                                                                                                 ]
[-] EMBL BG932323             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TGACCGAGTTCACGTTTCAGTGATCCACGAGGACTTTTGACGTAAACCACTCTTTTAATGGTTTTTACTTTTATGCCTTGAGGCACATTCACAGTTTCAGACGACTTTATAATCTTCATTATGTGTAAAGGCAGAAAAGAATGAAGGTAACAAATAAGGGATATCGCAAATCGTATTCCGTCTCAAACACACGCGCCGC                      ]
[-] EMBL CD138158             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AAACCACTCTTTTAATGGCTTTTAGTTTTATGCCATGAGGCACATTCACAGTTTCAGACGACTTTATAATCTTCATTATGTGTAAAGGCAGAAAAGAATGAAGGTAACAAATAAGGGATATCGCAAA                                                   ]
[-] EMBL CD136370             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CTTTTATGCCTTGAGGCACATCCACAGTTTCAGACGACTTTATAATCTTCATTATGTGTAAAGGCAGAAAAGAATGAAGGTAACAAATAAGGGATATCGCAAATCGTATTCCGTCTC                                     ]




>consensus_11160#1
ACGCATACGGTATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGG
GGTTAGCTAAATTTTATTCAATTAGCTTCAATAGATTCTTTACTGGATACATATATACCA
TCAAGAAATTTACGGATATCCTTGTGTCGAACCCTGCAGGACTGTTGAACAAGGGCAGCA
CATTTTGCGACCTTTTCAATATCATTGCCCTCAATTTGAATTTCATCTTTCACTCCAGTG
GCTGAGACTTTTACACCTGATTCCATAGGTACAATCTTGGTCGCTTTTTCTCCTAAAAAG
TTGCGGATCTCCAACTTGGAACCGTCGTTGGCTGGAATCATGTTGATGGGGAAGTGGGCA
TAAACGGACTTTAATTTATAACGATACCCAGATGTAACACCTTTTATCATATTTCCAATA
TGGGAGCAGACTGTCCGGACAGCAGCTAGCTCCTTTCTGTTGCCAAAAAACTTTGTAACA
ACAATCCTTTTCGAGGAAACTTTGATGTCTAGGGACAAATGACCGAAGTCACGTTTCAGT
GATCCACGAGGACCTTTGACGTAAACCACTCTTTTAATGGCTTTTACTTTTATGCCTTGA
GGCACATTCACAGTTTCAGACGACTTTATAATCTTCATTATGTGTAAAGGCAGAAAAGAA
TGAAGGTAACAAATAAGGGATATCGCAAATCGTATTCCGTCTCAAACACACGCGCCGCAA
CTGCACCTCGTGCCGAATTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11160#0      CCGAGCGGCCGCGACAAGTTTTTTTTTTTTTTTTTNTTAATTTTTTTTTTTTTTTTTTTT 60
consensus_11160#1      --------------------------------------ACGCATACGGTATGCAGCTGCA 22
                                                             *    *    * *     *   

consensus_11160#0      TTTTTTTTTTTTTTTTTTTTNNTNNNNNGTTTTTCCGGGGTTAGCTAAATTTTATTCAAT 120
consensus_11160#1      TGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGGGGTTAGCTAAATTTTATTCAAT 82
                       *    * *************  *      *******************************

consensus_11160#0      TAGCTTCAATAGATTCTTTACTGGATACATATATACCATCAAGAAATTTACGGATATCCT 180
consensus_11160#1      TAGCTTCAATAGATTCTTTACTGGATACATATATACCATCAAGAAATTTACGGATATCCT 142
                       ************************************************************

consensus_11160#0      TGTGTCGAACCCTGCAGGACTGTTGAACAAGGGCAGCACATTTTGCGACCTTTTCAATAT 240
consensus_11160#1      TGTGTCGAACCCTGCAGGACTGTTGAACAAGGGCAGCACATTTTGCGACCTTTTCAATAT 202
                       ************************************************************

consensus_11160#0      CATTGCCCTCAATTTGAATTTCATCTTTCACTCCAGTGGCTGAGACTTTTACACCTGATT 300
consensus_11160#1      CATTGCCCTCAATTTGAATTTCATCTTTCACTCCAGTGGCTGAGACTTTTACACCTGATT 262
                       ************************************************************

consensus_11160#0      CCATAGGTACAATCTTGGTCGCTTTTTCTCCTAAAAAGTTGCGGATCTCCAACTTGGAAC 360
consensus_11160#1      CCATAGGTACAATCTTGGTCGCTTTTTCTCCTAAAAAGTTGCGGATCTCCAACTTGGAAC 322
                       ************************************************************

consensus_11160#0      CGTCGTTGGCTGGAATCATGTTGATGGGGAAGTGGGCATAAACGGACTTTAATTTATAAC 420
consensus_11160#1      CGTCGTTGGCTGGAATCATGTTGATGGGGAAGTGGGCATAAACGGACTTTAATTTATAAC 382
                       ************************************************************

consensus_11160#0      GATACCCAGATGTAACACCTTTTATCATATTTCCAATATGGGAGCAGACTGTCCGGACAG 480
consensus_11160#1      GATACCCAGATGTAACACCTTTTATCATATTTCCAATATGGGAGCAGACTGTCCGGACAG 442
                       ************************************************************

consensus_11160#0      CAGCTAGCTCCTTTCTGTTGCCAAAAAACTTTGTAACAACAATCCTTTTCGAGAAAACTT 540
consensus_11160#1      CAGCTAGCTCCTTTCTGTTGCCAAAAAACTTTGTAACAACAATCCTTTTCGAGGAAACTT 502
                       ***************************************************** ******

consensus_11160#0      TGATGTCTAGGGACAAATGACCGAAGTCACGTTTCAGTGATCCACGAGGACCTTTGACGT 600
consensus_11160#1      TGATGTCTAGGGACAAATGACCGAAGTCACGTTTCAGTGATCCACGAGGACCTTTGACGT 562
                       ************************************************************

consensus_11160#0      AAACCACTCTTTTAATGGCTTTTACTTTTATGCCTTGAGGCACATTCACAGTTTCAGACG 660
consensus_11160#1      AAACCACTCTTTTAATGGCTTTTACTTTTATGCCTTGAGGCACATTCACAGTTTCAGACG 622
                       ************************************************************

consensus_11160#0      ACTTTATAATCTTCATTATGTGTAAAGGCAGAAAAGAATGAAGGTAACAAATAAGGGATA 720
consensus_11160#1      ACTTTATAATCTTCATTATGTGTAAAGGCAGAAAAGAATGAAGGTAACAAATAAGGGATA 682
                       ************************************************************

consensus_11160#0      TCGCAAATCGTATTCCGTCTCAAACACACGCGCCGCAACTGCAACAACCGCCACAATTAT 780
consensus_11160#1      TCGCAAATCGTATTCCGTCTCAAACACACGCGCCGCAACTGCACCTCGTGCCGAATTC-- 740
                       ******************************************* *    ***  * *   

consensus_11160#0      CCAGGTCGG 789
consensus_11160#1      ---------