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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11162#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1100 fasta sequence
[GTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTGAGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCACTGATCTTTGAATATGAACCATCTCCGTCTGGCCCGCCATTCCAATCCCCATACGTAATATTGGGTTCATACCAAAATAAAGCATTAGAGTTATTAAAAGAATGAAATGTTGGATCTTCACTTAAATAGACAAATTGATCCAAAGGAACTGGGACAGAACCTTTAACCCATGGAGAATGGTCATCAACTAAGTTAATAGTTAGATTTGGATGCCAATGAGTGGTCGGAGGTAAATATTGTACATCAGATGGTGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTGAGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCACTGATCTTTGAATATGAACCATCTCCGTCTGGCCCGCCATTCCAATCCCCATACGTAATATTGGGTTCATACCAAAATAAAGCATTAGAGTTATTAAAAGAATGAAATGTTGGATCTTCACTTAAATAGACAAATAAATCCATCAGAGAACCCGACTGATAAAGATTTGTAGCTGGGATAACCGTTTTACTTGGATCCATCTGGTTAGGTGATGGACGACGAAACAAGTTGAGGACAAAGTATGCTGTGAGCAGACGGAAAGCAAATGCCTTCAACATTCCCCATTTGTTTGGTTGGGCTTGTTGTTGTTGAACAGCAGGTGTTCCTGTTGCACCAACGGCTGGCACGACCTCTGCAGAAGTAGTGTCAGGCATTTTGAACTTTGAAGTTTACAGGTATAAAACAGGGCTTATATTCAACATCCC]
[+] EMBL CD095355 [GTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTGAGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCACTGATCTTTGAATATGAACCATCTCCGTCTGGCCCGCCATTCCAATCCCCATACGTAATATTGGGTTCATACCAAAATAAAGCATTAGAGTTATTAAAAGAATGAAATGTTGGATCTTCACTTAAATAGACAAATTGATCCAAAGGAACTGGGACAGAACCTTTAACCCATGGAGAATGGTCATCAACTAAGTTAATAGTTAGATTTGGATGCCAATGAGTGGTCGGAGGTAAATATTGTACATCAGATGGTGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCTACATTTTTGATTTATATACAGTG ]
[+] EMBL CD095341 [GTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGGCCGTATTTGGATCTGGTGAGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCACTGATCTTTGAATATGAACCATCTCCGTCTGGCCCGCCATTCCAATCCCCATACGTAATATTGGGTTCATACCAAAATAAAGCATTAGAGTTATTAAAAGAATGAAATGTTGGATCTTCACTTAAATAGACAAATTGATCCAAAGGAACTGGGACAGAACCTTTAACCCATGGAGAATGGTCATCAACTAAGTTAATAGTTAGATTTGGATGCCAATGAGTGGTCGGAGGTAAATATTGTACATCAGATGGTGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTG ]
[-] EMBL CD094512 [ CAATGAATTTCACTGATCTTTGAATATGAACCATCTCCGTCTGGCCCGCCATTCCAATCCCCATACGTAATATTGGGTTCATACCAAAATAAAGCATTAGAGTTATTAAAAGAATGAAATGTTGGATCTTCACTTAAATAGACAAATTGATCCAAAGGAACTGGGACAGAACCTTTAACCCATGGAGAATGGTCATCAACTAAGTTAATAGTTAGATTTGGATGCCAATGAGTGGTCGGAGGTAAATATTGTACATCAGATGGTGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTGAGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCACTGATCTTTGAATATGAACCATCTC ]
[+] EMBL CD161291 [ ATTGTACATCAGATGGTGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTGAGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCATTGATCTTTGAATATGAACCCTCTCCGTCTGGCCCGCCATTCCAATCCCCATACGTAATATTGGGTTCATACCAAAATAAAGCATTAGAGTTATTAAAAGAATGAAATGTTGGATCTTCACTTAAATAGACAAATAAATCCATCAGAGAACCCGACTGATAAAGATTTGTAGCTGGGATAACCGTTTTACTTGGATCCATCTGGTTAGGTGATGGACGACGAAACAAGTTGAGGACAAAGTATGCTGCGAGCAGACGGAAAGCAAATGCCTTCAACATTCCCCACTTGTTTGGTTGGGCTTGTTGTTGTTGAACAGCANGTGTTCCTGTTGCACCAACGGCTGGCACGACCTCTGC ]
[+] EMBL CD186160 [ TTACTTGGATCCATCTGGTTAGGTGATGGACGACGAAACAAGTTGAGGACAAAGTATGCTGTGAGCAGACGGAAAGCAAATGCCTTCAACATTCCCCATTTGTTTGGTTGGGCTTGTTGTTGTTGAACAGCAGGTGTTCCTGTTGCACCAACGGCTGGCACGACCTCTGCAGAAGTAGTGTCAGGCATTTTGAACTTTGAAGTTTACAGGTATAAAACAGGGCTTATATTCAACATCCC]
[+] EMBL CD186221 [ TTACTTGGATCCATCTGGTTAGGTGATGGACGACGAAACAAGTTGAGGACAAAGTATGCTGTGAGCAGACGGAAAGCAAATGCCTTCAACATTCCCCATTTGTTTGGTTGGGCTTGTTGTTGTTGAACAGCAGGTGTTCCTGTTGCACCAACGGCTGGCACGACCTCTGCAGAAGTAGTGTCAGGCATTTTGAACTTTGAAGTTTACAGGTATAAAACAGGGCTTATATTCAACATCCC]
[+] EMBL CD068623 [ tGGTGATGGACGACGAAACAAGTTGAGGACAAAGTATGCTGTGAGCAGACGGAAAGCAAATGCCTTCAACATTCCCCATTTGTTTGGTTGGGCTTGTTGTTGTTGAACAGCAGGTGTTCCTGTTGCACCAACGGCTGGCACGACCTCTGCAGAAGTAGTGTCAGGCATTTTGAACTTTGAAGTTTACAGGTATAAAACAGGGCTTATATTCAACA ]
consensusID : consensus_11162#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 26 consensus length = 1068 fasta sequence
[TCACTTCCACAACAANAATGCAGTAAGTAATGTTGGTTATGTATTATGTTCAAATTTATAGATTTAACTATGATAAAATAACAAAAACTGTCTATATTTACAAAAACAATAAAAGATCACAATAATTAACGAACTACTTTATGAAAACAAGAACAAAGTTCATACTAAAACTCAAAAAAAGAAAAATCTTTGTACTCCACATCATAAATTTTACCTTTATTGTATCTTGTTCCTCATCATTTTCATTTTCTGATGGTAACATAGAAGTGGCCATCAACTGATTGAACCGAGTTTTCTTAGCTGCTTGTGCAGCGTACAACTGCCATTTGAATAGAGATAAAGGTGCTAAAGTAATATGAATTGGTAGTATTGGTGTAGTTTCATTCACTGGTTTATAATCTTCATTTAGATTCCAATAATCACTCAGATAAACAACGGGATAATATTCATTGGTCGGCGAATAAAACTCGATAAATTGATCCAAAGGAACTGGGACAGAACCTTTAACCCATGGAGAATGGTCATCAACTAAGTTAATAGTTAGATTTGGATGCCA--ATGCGTCCTCGGAGGTAAATATTGTACATCAGATGG-TGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG-AGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCA-CTGAT-CTTTGAATATGAACCATCTCCGTCTGGCCCGCCATTCCAATCCCCATACGTAATATTGGGTTCATACCAAAATAAAGCATTAGAGTTATTAAAAGAATGAAATGTTGGATCTTCACTTAAATAGACAAATAAATCCATCAGAGAACCCGACTGATAAAGATTTGTAGCTGGGATAACCGTTTTACTTGGATCCATCTGGTAAAAATATGGAACGCTTCACGATTNTGCGT]
[-] EMBL CD124962 [TCACTTCCACAACAANAATGCAGTAAGTAATGTTGGTTATGTATTATGTTCAAATTTATAGATTTAACTATGATAAAATAACAAAAACTGTCTATATTTACAAAAACAATAAAAGATCACAATAATTAACGAACTACTTTATGAAAACAAGAACAAAGTTCATACTAAAACTCAAAAAAAGAAAAATCTTTGTACTCCACATCATAAATTTTACCTTTATTGTATCTTGTTCCTCATCATTTTCATTTTCTGATGGTAACATAGAAGTGGCCATCAACTGATTGAACCGAGTTTTCTTAGCTGCTTGTGCAGCGTACAACTGCCATTTGAATAGAGATAAAGGTGCTAAAGTAATATGAATTGGTAGTATTGGTGTAGTTTCATTCACTGGTTTATAATCTTCATTTAGATTCCAATAATCACTCAGATAAACAACGGGATAATATTCATTGGTCGGCGAATAAAACTCGATAA ]
[-] EMBL CD064275 [ ATAAACAACGGGATAATATTCATTGGTCGGCGAATAAAACTCGATAAATTGATCC AAGGAACTGGGACAGAACCTTTAACCCATGGAGAATGGTCATCAACTAAGTTAATAGTTAGATTT GATGCCATGATGCGTCCTCGAAGttgg ]
[-] EMBL CD166883 [ ATAAACAACGGGATAATATTCATTGGTCGGCGAATAAAACTCGATAAATTGATCCAAAGGAACTGGGACAGAACC TTAACCCATGGAGAATGGTCATCTACTAAGTT ATAGTTAGATCTG ]
[+] EMBL CD094923 [ CGATAAATTGATCCAAAGGAACTGGGACAGAACCTTTAACCCATGGAGAATGGTCATCAACTAAGTTAATAGTTAGATTTGGATGCCA ATGAGTGGTCGGAGGTAAATATTGTACATCAGATGG TGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG AGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAATATGAACCATCTCCGTCTGGCCCGCCATTCCAATCCCCATACGTAATATTGGGTTCATACCAAAATAAAGCATTAGAGTTATTAAAAGAATGAAATGTTGGATCTTCACTTAAATAGACAAATAAATCCATCAGAGAACCCGACTGATAAAGATTTGTAGCTGGGATAACCGTTTTACTTGGATCCATCTGGTAAAAATATGGAACGCTTCACGATTNTGCGT]
[-] EMBL CD201187 [ caCGGAGGTAAATATTGTACATCAGATGG TGTTGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTATGGGATAAAGTACGACGTTTGTAACGCGTCCACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTGTAGAAACCAGGTTTAACCAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAAT ]
[+] EMBL CD150698 [ GTACATCAGATGG TGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG AGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAA ]
[+] EMBL CD151592 [ GTACATCAGATGG TGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG AGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAA ]
[+] EMBL CD150708 [ GTACATCAGACGG TGTCGAAGAACCAGCTACCAAATCTGGATGAGANTNAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG AGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAA ]
[+] EMBL CD144545 [ GTACATCAGATGG TGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGA TAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG AGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAA ]
[+] EMBL CD071791 [ GTACATCAGATGG TGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG AGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAA ]
[+] EMBL CD150711 [ GTACATCAGATGG TGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAAAAGTTATTGCCCGTATTTGGATCTGGTG AGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACGTAAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAA ]
[-] EMBL CD113187 [ TACATCAGATGG TGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG AGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAAT ]
[-] EMBL CD113205 [ TACATCAGATGG TGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG AGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAAT ]
[-] EMBL CD113231 [ TACATCAGATGG TGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG AGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAAT ]
[-] EMBL CD113188 [ TACATCAGATGG TGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG AGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTCGGGAAACTGACTGCAATGAATTTAAGCTGATACTTTGAATca ]
[-] EMBL CD150742 [ TACATCAGATGG TGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG AGAAACCAGGTTTAGCAAAATATACATGTATATACAATGAACCATTGAACATGAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAAT ]
[-] EMBL CD201146 [ TACATCAGATGG TGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG AGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAAT ]
[-] EMBL CD201147 [ TACATCAGATGG TGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG AGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAAT ]
[-] EMBL CD201168 [ TACATCAGATGG TGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG AGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAAT ]
[-] EMBL CD201175 [ TACATCAGATGG TGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG AGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAAT ]
[-] EMBL CD113266 [ TACATCAGATGG TGTCGAAGAACCAGCTACTAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACAGGATAAACGACGGCGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG AGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAAT ]
[-] EMBL CD151589 [ TACATCAGATGG TGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCCGTGTTTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG AGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAAT ]
[-] EMBL CD113229 [ TACATCAGATGG TGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG TGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAAT ]
[-] EMBL CD113171 [ TACATCAGATGG TGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG AGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAAT ]
[-] EMBL CD113172 [ TACATCAGATGG TGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG AGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAAT ]
[+] EMBL CD113247 [ tgCATCAGATGGATGTCGAAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTG AGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCA CTGAT CTTTGAA ]
consensusID : consensus_11162#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 732 fasta sequence
[ACAAATAAATCCATCAGAGAACCCGACTGATAAAGATTTGTAGCTGGGATAACCGTTTTACTTGGATCCATCTGGTTAGGTGATGGACGACGAAACAAGTTGAGGACAAAGTATGCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTGAGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCACTGATCTTTGAATATGAACCATCTCCGTCTGGCCCGCCATTCCAATCCCCATACGTAATATTGGGTTCATACCAAAATAAAGCATTAGAGTTATTAAAAGAATGAAATGTTGGATCTTCACTTAAATAGACAAATAAATCCATCAGAGAACCCGACTGATAAAGATTTGTAGCTGGGATAACCGTTTTACTTGGATCCATCTGGTTAGGTGATGGACGACGAAACAAGTTGAGGACAAAGTATGCTGTGAGCAGACGGAAAGCAAATGCCTTCAACATTCCCCATTTGTTTGGTTGGGCTTGTTGTTGTTGAACAGCAGGTGTTCCTGTTGCACCAACGGCTGGCACGACCTCTGCAGAGGTAGTGTCAGGCATTNTGAACTTTGAGTTTACAGGTATAAAACAGGGCTTATAATCAACA]
[+] EMBL CD168847 [ACAAATAAATCCATCAGAGAACCCGACTGATAAAGATTTGTAGCTGGGATAACCGTTTTACTTGGATCCATCTGGTTAGGTGATGGACGACGAAACAAGTTGAGGACAAAGTATGCTGTGATTAGATTTGTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTGAGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCACTGATCTTTGAATATGAACCATCTCCGTCTGGCCCGCCATTCCAATCCCCATACGTAATATTGGGTTCATACCAAAATAAAGCATTAGAGTTATTAAAAGAATGAAATGTTGGATCTTCACTTAAATAGACAAATAAATCCATCAGAGAACCCGACTGATAAAGATTTGTAGCTGGGATAACCGTTTTACTTGGATCCATCTGGTTAGGTGATGGACGACGAAACAAGTTGAGGACAAAGTATGCTGTGAGCAGACGGAAAGCAAATGCCTTCAACATTCCCCATTTGTTTGGTTGGGCTTGTTGTTGTTGAACAGCAGGTGTTCCTGTTGCACCAACGGCTGGCACGACCTCTGCAGAGGTAGTGTCAGGCATTNTGAACTTTGAGTTTACAGGTATAAAACAGGGCTTATAATCAACA]
[+] EMBL CD168171 [ ACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTGAGAAACCAGGTTTAACAAAATATACATGTATATACAATGAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCACTGATCTTTGAATATGAACCATCTCCGTCTGGCCCGCCATTCCAATCCCCATACGTAATATTGGGTTCATACCAAAATAAAGCATTAGAGTTATTAAAAGAATGAAATGTTGGATCTTCACTTAAATAGACAAATAAATCCATCAGAGAACCCGACTGATAAAGATTTGTAGCTGGGATAACCGTTTTACTTGGATCCATCTGGTTAGGTGATGGACGACGAAACAAGTTGAGGACAAAGTATGCTGTGAGCAGACGGTAAGCAAATGCCTTCAACATTCCCCATTTGTTTGGTTGGGCTTGTTGTTGTTGAA ]
consensusID : consensus_11162#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 589 fasta sequence
[TATCTGAATGATTATTGGAATCTAAATGAAGATTATAAACCAGTGAATGAAACTACACCAATACTACCAATTCATATTACTTTAGCACCTTTAT-CTCTATTCAAATGGCAGTTGTACGCTGCACAAACAGCTAAGAAAACTTGGTTCAATCAGTTGATGGCCACTTCTATGTTACCATCAGAAAATGAAAATGATGAGGAACAAGATACAATAAAGAAAGCACTGATCGAAACAAATCCTTTGCTTTTAGCTGTAACAGTTGTCGTATCAATTGTCCATAGTGTTTTTGAATTGTTAGCATTTAAAAATGATATACAATTTTGGAAAACAAGAGAATCCTTAGAAGGTCTCTCAGTTCGCTCTGTATTTTTCAATGTCTTCCAGTCATTCATTGTTGTGCTGTACGTACTTGATAACGATACCAATTTTGTTATAAAACTATCAGTTGTTTTTGGACTGTTAATTGAGATCTGGAAAATCAAGAAAGTCCCTTCTTTCAGATTTAATTATGATTCGTTGATATTCAATGTATTTCCACGTATTCATGTGGATTACCAATCATCATACGTAGAAAGTGATACCAAAAAAT]
[+] EMBL CD201912 [TATCTGAATGATTATTGGAATCTAAATGAAGATTATAAACCAGTGAATGAAACTACACCAATACTACCAATTCATATTACTTTAGCACCTTTAT CTCTATTCAAATGGCAGTTGTACGCTGCACAAACAGCTAAGAAAACTTGGTTCAATCAGTTGATGGCCACTTCTATGTTACCATCAGAAAATGAAAATGATGAGGAACAAGATACAATAAAGAAAGCACTGATCGAAACAAATCCTTTGCTTTTAGCTGTAACAGTTGTCGTATCAATTGTCCATAGTGTTTTTGAATTGTTAGCATTTAAAAATGATATACAATTTTGGAAAACAAGAGAATCCTTAGAAGGTCTCTCAGTTCGCTCTGTATTTTTCAATGTCTTCCAGTCATTCATTGTTGTGCTGTACGTACTTGATAACGATACCAATTTTGTTATAAAACTATCAGTTGTTTTTGGACTGTTAATTGAGATCTGGAAAATCAAGAAAGTCCCTTCTTTCAGATTTAATTATGATTCGTTGATATTCAATGTATTTCCACGTATTCATGTGGATTACCAATCATCATACGTAGAAAGTGATACCAAAAAAT]
[-] EMBL CD111889 [ ATTACTTTAGCACC TTATNCTCTATTCAAATGGCAGTTGTACGCTGCACAAACAGCTAAGAAAACTTGGTTCAATCAGTTGATGGCCACTTCTATGTTACCATCAGAAAATGAAAATGATGAGGAACAAGATACAATAAAGAAAGCACTGATCGAAACAAATCCTTTGCTTTTAGCTGTAACAGTTGTCGTATCAATTGTCCATTGTGTTTTTGAATTGTTAGCATTTAAAAATGATATACAATTTTGGAAAACAAGAGAATCCT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11162#0 ------------------------------------------------------------
consensus_11162#2 ------------------------------------------------------------
consensus_11162#1 TCACTTCCACAACAANAATGCAGTAAGTAATGTTGGTTATGTATTATGTTCAAATTTATA 60
consensus_11162#3 ------------------------------------------------------------
consensus_11162#0 ------------------------------------------------------------
consensus_11162#2 ------------------------------------------------------------
consensus_11162#1 GATTTAACTATGATAAAATAACAAAAACTGTCTATATTTACAAAAACAATAAAAGATCAC 120
consensus_11162#3 ------------------------------------------------------------
consensus_11162#0 -----------------------------------------GTGGTACGGGATAAACGAC 19
consensus_11162#2 ------------------------------------------------------------
consensus_11162#1 AATAATTAACGAACTACTTTATGAAAACAAGAACAAAGTTCATACTAAAACTCAAAAAAA 180
consensus_11162#3 ------------------------------------------------------------
consensus_11162#0 GACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTGTACTTCAGTGAATAGTTAT 79
consensus_11162#2 ------------------------------------------------------------
consensus_11162#1 GAAAAATCTTTGTACTCCACATCATAAATTTTACCTTTATTGTATCTTGTTCCTCATCAT 240
consensus_11162#3 ------------------------------------------------------------
consensus_11162#0 TGCCCGTATTTGGATCTGGTG-AGAAACCAGGTTTAACAAAATATACATGTATATACAAT 138
consensus_11162#2 ------------------------------------------------------------
consensus_11162#1 TTTCATTTTCTGATGGTAACATAGAAGTGGCCATCAACTGATTGAACCGAGTTTTCTTAG 300
consensus_11162#3 ------------------------------------------------------------
consensus_11162#0 GAACCATTGAACATAAGGTTGGGAAACTGACTGCAATGAATTTCACTGATCTTTGAATAT 198
consensus_11162#2 ------------------------------------------------------------
consensus_11162#1 CTGCTTGTGCAGCGTACAACTGCCATTTGAATAGAGATAAAGGTGCTAAAGT---AATAT 357
consensus_11162#3 ------------------------------------------------------------
consensus_11162#0 GAACCATCTCCGTCTGGCCCGCCATTCCAATCCCCATACGTAATATTGGGTTCATACCAA 258
consensus_11162#2 ------------------------------------------------------------
consensus_11162#1 GAATTGGTAGTATTGG---TGTAGTTTCATTCACTGGTTTATAATCTTCATTTAGATTCC 414
consensus_11162#3 ------------------------------------------------------------
consensus_11162#0 AATAAAGCATTAGAGTTATTAAAAGAATGAAATGTTGGATCTTCACTTAAA--TAGACAA 316
consensus_11162#2 ------------------------------------------------------------
consensus_11162#1 AATAATCACTCAGATAAACAACGGGATAATATTCATTGGTCGGCGAATAAAACTCGATAA 474
consensus_11162#3 ------------------------------------------------------------
consensus_11162#0 ATTGATCCAAAGGAACTGGGACAGAACCTTTAACCCATGGAGAATGGTCATCAACTAAGT 376
consensus_11162#2 --------------------------------------------------ACAAATAAAT 10
consensus_11162#1 ATTGATCCAAAGGAACTGGGACAGAACCTTTAACCCATGGAGAATGGTCATCAACTAAGT 534
consensus_11162#3 ---------------TATCTGAATGATTATTGGAATCTAAATGAAGATTATAAACCA-GT 44
** * *
consensus_11162#0 TAATAGTTAGATTTGGATGCCAATGAGTGGTCG--GAGGTAAATATTGTACATCAGATGG 434
consensus_11162#2 CCATCAGAGAACCCGACTGATAAAGATTTGTAGCTGGGATAACCGTTTTACTTGGATCCA 70
consensus_11162#1 TAATAGTTAGATTTGGATGCCAATGCGTCCTCG--GAGGTAAATATTGTACATCAGATGG 592
consensus_11162#3 GAATGAAACTACACCAATACTACCAATTCATAT-TACTTTAGCACCTTTATCTCTATTCA 103
** * * * * * ** * ** *
consensus_11162#0 TGTCG--AAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTT 492
consensus_11162#2 TCTGGTTAGGTGATGGACGACGAAACAAGTTGAGGA-CAAAGTATGCTGTGATTAGATTT 129
consensus_11162#1 TGTCG--AAGAACCAGCTACCAAATCTGGATGAGAATCAGTATGACCTGTGATTAGATTT 650
consensus_11162#3 AATGGC-AGTTGTACGCTGCACAAAC-AGCTAAGAA-AACTTGGTTCAATCAGTTGATGG 160
* * * * ** * * * ** * * * * * * ***
consensus_11162#0 GTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTG 552
consensus_11162#2 GTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTG 189
consensus_11162#1 GTGGTACGGGATAAACGACGACGTTTGTAACGCGTCAACATTTTTGATTTATATACAGTG 710
consensus_11162#3 CCACTTCTATGTTACCATCAGAAAATGAAAATGATGAGGAACAAGATACAATAAAGAAAG 220
* * * * * * ** ** * * * *** * * *
consensus_11162#0 TACT--TCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTGAGAAACCAGGTTTAACAA 610
consensus_11162#2 TACT--TCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTGAGAAACCAGGTTTAACAA 247
consensus_11162#1 TACT--TCAGTGAATAGTTATTGCCCGTATTTGGATCTGGTGAGAAACCAGGTTTAACAA 768
consensus_11162#3 CACTGATCGAAACAAATCCTTTGCTTTTAGCTGTAACAGTTGTCGTATCAA-TTGTCCAT 279
*** ** * * **** ** ** * * * ** * ** ** **
consensus_11162#0 AATATACATG---TATATACAATGAACCATTGAACATAAGGTTGGGAAACTGA-----CT 662
consensus_11162#2 AATATACATG---TATATACAATGAACCATTGAACATAAGGTTGGGAAACTGA-----CT 299
consensus_11162#1 AATATACATG---TATATACAATGAACCATTGAACATAAGGTTGGGAAACTGA-----CT 820
consensus_11162#3 AGTGTTTTTGAATTGTTAGCATTTAAAAATGATATACAATTTTGGAAAACAAGAGAATCC 339
* * * ** * * ** * ** ** * * ** **** **** *
consensus_11162#0 GCAATGAATTTCACTGATCTTTGAATATGAACCATCTCCGTCTGGCCCGCCATTCCAATC 722
consensus_11162#2 GCAATGAATTTCACTGATCTTTGAATATGAACCATCTCCGTCTGGCCCGCCATTCCAATC 359
consensus_11162#1 GCAATGAATTTCACTGATCTTTGAATATGAACCATCTCCGTCTGGCCCGCCATTCCAATC 880
consensus_11162#3 TTAGAAGGTCTCTCAGTTCGCTCTGTATTTTTCAATGTCTTCCAGTCATTCATTGTTGTG 399
* * ** * * ** * *** ** * ** * * **** *
consensus_11162#0 CCCATACGTAATATTGGGTTCATACCAAAATAAAGCATTAGAGTTATTAAAAGAAT--GA 780
consensus_11162#2 CCCATACGTAATATTGGGTTCATACCAAAATAAAGCATTAGAGTTATTAAAAGAAT--GA 417
consensus_11162#1 CCCATACGTAATATTGGGTTCATACCAAAATAAAGCATTAGAGTTATTAAAAGAAT--GA 938
consensus_11162#3 CT-GTACGTACT-TGATAACGATACCAATTT--TGTTATAAAACTATCAGTTGTTTTTGG 455
* ****** * * ******* * * ** * *** * * * *
consensus_11162#0 AATGTTGGATCTTCACTTAAATAGACAAATAAATCCATCAGAGAACCCGACTGATAAAGA 840
consensus_11162#2 AATGTTGGATCTTCACTTAAATAGACAAATAAATCCATCAGAGAACCCGACTGATAAAGA 477
consensus_11162#1 AATGTTGGATCTTCACTTAAATAGACAAATAAATCCATCAGAGAACCCGACTGATAAAGA 998
consensus_11162#3 ACTGTTA-ATTGAGATCTGGAAAATCAAGAAAGTCCCTTCTT--TCAGATTTAATTATGA 512
* **** ** * * * * *** ** *** * * * ** * **
consensus_11162#0 TTTGTAGCTGGGATAACCGTTTTACTTGGATCCATCTGGTTAGGTGATGGACGACGAAAC 900
consensus_11162#2 TTTGTAGCTGGGATAACCGTTTTACTTGGATCCATCTGGTTAGGTGATGGACGACGAAAC 537
consensus_11162#1 TTTGTAGCTGGGATAACCGTTTTACTTGGATCCATCTGGTAAAAATATGGAACGCTTCAC 1058
consensus_11162#3 TTCGTTGATATT-CAATGTATTTCCACGTATTCATGTGGATTACCAATCATCATACGTAG 571
** ** * * ** *** * * ** *** *** ** *
consensus_11162#0 AAGTTGAGGACAAAGTATGCTGTGAGCAGACGGAAAGCAAATGCCTTCAACATTCCCCAT 960
consensus_11162#2 AAGTTGAGGACAAAGTATGCTGTGAGCAGACGGAAAGCAAATGCCTTCAACATTCCCCAT 597
consensus_11162#1 GATTNTGCGT-------------------------------------------------- 1068
consensus_11162#3 AAAGTGATACCAAAAAAT------------------------------------------ 589
*
consensus_11162#0 TTGTTTGGTTGGGCTTGTTGTTGTTGAACAGCAGGTGTTCCTGTTGCACCAACGGCTGGC 1020
consensus_11162#2 TTGTTTGGTTGGGCTTGTTGTTGTTGAACAGCAGGTGTTCCTGTTGCACCAACGGCTGGC 657
consensus_11162#1 ------------------------------------------------------------
consensus_11162#3 ------------------------------------------------------------
consensus_11162#0 ACGACCTCTGCAGAAGTAGTGTCAGGCATTTTGAACTTTGAAGTTTACAGGTATAAAACA 1080
consensus_11162#2 ACGACCTCTGCAGAGGTAGTGTCAGGCATTNTGAACTTTGA-GTTTACAGGTATAAAACA 716
consensus_11162#1 ------------------------------------------------------------
consensus_11162#3 ------------------------------------------------------------
consensus_11162#0 GGGCTTATATTCAACATCCC 1100
consensus_11162#2 GGGCTTATAATCAACA---- 732
consensus_11162#1 --------------------
consensus_11162#3 --------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||