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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11166#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1162 fasta sequence
[AGCAGANATAATGGCGGTGGCTGGCACGACAATGCAAACGG-CGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAACCTTACGCACACCAACAGCCTTATGCTTATAACGGAGGAGGCTATGGTTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGGCAATTATCAGCAACAAGGCTATGGTGGTGGTCCGATGAGAGCAACACCTGCAACTGCACAGTATCCCCGTCCTGCTCCATATTCCGGCAATGGTTGGCAACAACGTTGAAGTTAATTTTGTGACATATAAGGATTCTTCATCCGTTGATGCTGCACAAAACAATCGCCCACATACTGTAGATGGAAAAGAGGTAGATACCAAGCGTGCCATGCCCAGAGAAGAAACAAGTCCTGAGGTTCATGCTGCAGTGAAGAAAATATTTGTAGGTGCTTTGAAGAAAGATGTGACAAATGAAGACCTAAGTGATTACTTTTCTCAATTCGGGACTGTAACTGATGCTCAGATTGTTATAGCTAAAGATACGAATACATCACGGGGGTTCGCATTCGTTACATTTGATGACACAGATGCAGTAGACAAAGTTATCCTAGCTCGACCACATACTATCAAAGACTCCAAAGCAGATGTACGAAAAGCGCTCAGTCGAG-AAGAAATGAACAAAATGAGGTCCAAACCTGCACCCATGAGAGCAGATTATAATGGCGGTGGCTGGCACGACAATGCAAACGGCGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAACCTTACGCACACCAACAGCCTTATGCTTATAACGGAGGAGGCTATGGTTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGGCAATTATCAGCAACAAGGCTATGGT-GGTGGTCCGATGAGAGCAACACCTGCAACTGCACAGTATCCCCGTCCTGCTCCATATTCCGGCAATGGTTGGCAACAACGTTGAAGTTAATTTTGTTATTTCAATACCAAACGCCTAGTGCATTTTGACAACTTTTTATCACTTGCTGTAAAATATACAAATCAGTTATTCAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACT]
[+] EMBL CD168566 [AGCAGANATAATGGCGGTGGCTGGCACGACAATGCAAACGG CGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAACCTTACGCACACCAACAGCCTTATGCTTATAACGGAGGAGGCTATGGTTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGGCAATTATCAGCAACAAGGCTATGGTGGTGGTCCGATGAGAGCAACACCTGCAACTGCACAGTATCCCCGTCCTGCTCCATATTCCGGCAATGGTTGGCAACAACGTTGAAGTTAATTTTGTGACATATAAGGATTCTTCATCCGTTGATGCTGCACAAAACAATCGCCCACATACTGTAGATGGAAAAGAGGTAGATACCAAGCGTGCCATGCCCAGAGAAGAAACAAGTCCTGAGGTTCATGCTGCAGTGAAGAAAATATTTGTAGGTGCTTTGAAGAAAGATGTGACAAATGAAGACCTAAGTGATTACTTTTCTCAATTCGGGACTGTAACTGATGCTCAGATTGTTATAGCTAAAGATACGAATACATCACGGGGGTTCGCATTCGTTACATTTGATGACACAGATGCAGTAGACAAAGTTATCCTAGCTCGACCACATACTATCAAAGACTCCAAAGCAGATGTACGAAAAGCGCTCAGTCGAG AAGAAATGAAC AAATGAGGTCC AACCTG ]
[+] EMBL CD168571 [ gattTAATGGCGGTGGCTGGTACGACAATGCAAACGGCCGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAACCTTACGCACACCAACAGCCTTATGCTTATAACGGAGGAGGCTATGGTTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGTTTTCGGCAATTATCAGCAACAAGGCTATGGTGGTGGTCCGATGAAAGCAACACCTGCAACTGCACAGTATCCCCGTCCTGCTCCATATTCCGGCAATGGTTGGCAACAACGTTGAAGTTAATTTTGTGACATATAAGGATTCTTCATCCGTTGATGCTGCACAAAACAATCGCCCACATACTGTAGATGGAAAAGAGGTAGATACCAAGCGTGCCATGCCCAGAAAAGAAACACGT ]
[+] EMBL CD165537 [ gagAACAAGTCCTGAGGTTCATGCTGCAGTGAAGAAAATATTTGTAGGTGCTTTGAAGAAAGATGTGACAAATGAAGACCT AGTGATTACTTTTCTCAATTCGGGACTGTAACTGATGCTCAGATTGTTATAGCTAAAGATACGAATACATCACGGGGGTTCGCATTCGTTACATTTGATGACACAGATGCAGTAGACAAAGTTATCCTAGCTCGACCACATACTATCAAAGACTCCAAAGCAGATGTACGAAAAGCGCTCAGTCGAG AAGAAATGAACAAAATGAGGTCCAAACCTGCACCCATGAGAGCAGATTATAATGGCGGTGGCTGGCACGACAATGCAAACGGCGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAACCTTACGCACACCAACAGCCTTATGCTTATAACGGAGGAGGCTATGGTTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGGCAATTATCAGCAACAAGGCTATGGT GGTGGTCCGATGAGAGCAACACCTGCAACTGCACAGTATCCCCGTCCTGCTCCATATTCCGGCAATGGTTGGCAACAACGTTGAAGTTAATTTTGTTATTTCAATACCAAACGCCTAGTGCATTNTGACAACTATTTATC ]
[+] EMBL CD178799 [ GTGCTTTGAAGAAAGATGTGACAAATGAAGACCTAAGTGATTACTTTTCTCAATTCGGGACTGTAACTGATGCTCAGATTGTTATAGCTAAAGATACGAATACATCACGGGGGTTCGCATTCGTTACATTTGATGACACAGATGCAGTAGACAAAGTTATCCTAGCTCGACCACATACTATCAAAGACTCCAAAGCAGATGTACGAAAAGCGCTCAGTCGAG AAGAAATGAACAAAATGAGGTCCAAACCTGCACCCATGAGAGCAGATTATAATGGCGGTGGCTGGCACGACAATGCAAACGGCGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAACCTTACGCACACCAACAGCCTTATGCTTATAACGGAGGAGGCTATGGNTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGGGCATTATCAGCAACAAGGCTATGGTGGGGGGTCCGATGAGAGCACCACCTGCAACTG ]
[-] EMBL AI977712 [ ATGTCACAGAAGCAGTAGACAAAGTTATCCTAGCTCGACCACATACTATCAAAGACTCCAAAACAGATGTACGAAAAGCGCTCAGTCGAG AAAAAATGAACAAAATGAGGTCCAAACCTGCACCCATGAGAGCAGATTATAATGGCGGTGGCTGGCACGACAATGCAAACGACGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAACCTTACGCACAACAACAGCCTTATGCTTATAACGGAGAAGGCTATGGTTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGGCAATTATCAGCAACAAGGCTATGGT GGTGGTCCGATGAGAGCAACACCTGCAACTGCACAGTATCCCCGTCCTGCTCCATATTCCGGCAATGGTTGGCAACAACGTTGAAGTTAATTTTGTTATTTCAATACCAAACGCCTAGTGCATTTTGACAACTTTTTATCACCTGCTGTAAAATATACAAATCAGTTATTCAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACT]
[+] EMBL CD120988 [ CAGTAGACAAAGTTATCCTAGCTCGACCACATACTATCAAAGACTCCAAAGCAGATGTACGAAAAGCGCTCAGTCAAG AAGAAATGAACAAAATGAGGTCCAAACCTGCACCCATGAGAGCAGATTATAATGGCGGTGGCTGGCACGACAATGCAAACGGCGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAACCTTACGCACACCAACAGCCTTATGCTTATAACGGAGGAGGCTATGGTTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGGCAATTATCAGCAACAAGGCTATGGT GGTGGTCCGATGAGA ]
[-] EMBL AI395707 [ CAGTCGAGAAAGAATTGAACAAAATGAGGCNCAAACTTGCACCCATGAGAGCAGATTATAATGGC GTGGCTGGCACGACAATGCAAACGGC GTTTCCAGCCTCAGTCATGGGAACA GGTTATAGTCAACGTTACGCACACCAACA CCTTATGCTTATAACGGAGGA GCTATGGTTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGGCAATTATCAGCAACAAGGCTATGGT GGTGGTCCGATGAGAGCAACACCTGCAACTGCACAGTATCCCCGTCCTGCTCCATATTCCGGCAATGGTTGGCAACAACGTTGAAGTTAATTTTGTTATTTCAATACCAAACGCCTAGTGCATTTTGACAACTTTTTATCACTTGCTGTAAAATATACAAATCAGTTATTCAAAAAAAAAAAAAAAAAAAAAA ]
[-] EMBL AI977480 [ AGAAATGAACAAAATGAGGTCCCAACCTGCACCCATGAGAGCAGATTATAATGGCGGTGGCTGGCCCGACAATGCAAACGGCGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAACCTTACGCACACCAACAGCCTTATGCTTATAACGGAGGAGGCTATGGTTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGGCAATTATCAGCAACAAGGCTATGGT GGTGGTCCGATGAGAGCAACACCTGCAACTGCACAGTATCCCCGTCCTGCTCCATATTCCGGCAATGGTTGGCAACAACGTTGAAGTTAATTTTGTTATTTCAATACCAAACGCCTAGTGCATTTTGACAACTTTTTATCACTTGCTGTAAAATATACAAATCAGTTATTCAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACT]
[-] EMBL CD142260 [ AGAAATGAACAAAATGAGGTCCAAACCTGCACNCATGAGAGCAGATTATAATGGCGGTGGCTGGCACGACAATGCAAACGGCGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAACCTTACGCACACCAACAGCCTTATGCTTATAACGGAGGAGGCTATGGTTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGGCAATTATCAGCAACAAGGCTATGGT GGTGGTCCGATGAGAGCAACACCTGCAACTGCACAGTATCCCCGTCCTGCT ]
[+] EMBL CD063231 [ TGCACCCATGAGAGCAGATTATAATGGCGGTGGCTGGCACGACAATGCAAACGGCGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAACCTTACGCACACCAACAGCCTTATGCTTATAACGGAGGAGGCTATGGTTATGGCGGTTACAATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGGCAATTATCAGCAACAAGGCTATGGT GGTGGTCCGATGAGAGCAACACCTGCAACTGCACAGTATCCCCGTCCTGCTCCATATTCCGG ]
[-] EMBL AI394904 [ gCAACACCTTTATGTTTATAACGGAGGAGGCTATGGTTATGCCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGGCAATTATCAGCAACAAGGCTATGGT GGTGGTCCGATGAGAGCAACACCTGCAACTGCACAGTATCCCCGTCCTGCTCCATATTCCGGCAATGGTTGGCAACAACGTTGAAGTTAATTTTGTTATTTCAATACCAAACGCCTAGTGCATTTTGACAACTTTTTATCACTTGGCGTAAAATATACAAATCAGTTATTCTGCTAAAAAAAAAAA ]
consensusID : consensus_11166#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 829 fasta sequence
[CTCGAGGGCCAAAATTCGGCACGAGGGAGGTTTTGGTTTTGTGACATATAAGGATTCTTCATCCGTTGATGCTGCACAAAACAATCGCCCACATACTGTAGATGGAAAAGAGGTAGATACCAAGCGTGCCATGCCCAGAGAAGAAACAAGTCCTGAGGTTCATGCTGCAGTGAAGAAAATATTTGTAGGTGCTTTGAAGAAAGATGTGACAAATGAAGACCTAAGTGATTACTTTTCTCAATTCGGGACTGTAACTGATGCTCAGATTGTTATAGCTAAAGATACGAATACATCACGGGGGTTCGCATTCGTTACATTTGATGACACAGATGCAGTAGACAAAGTTATCCTAGCTCGACCACATACTATCAAAGACTCCAAAGCAGATGTACGAAAAGCGCTCAGTCGAGAAGAAATGAACAAAATGAGGTCCAAACCTGCACCCATGAGAGCAGATTATAATGGCGGTGGCTGGCACGACAATGCAAACGGCGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAACCTTACGCACACCAACAGCCTTATGCTTATAACGGAGGAGGCTATGGTTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGGCAATTATCAGCAACAAGGCTATNGGTGGTGGTCCGATGAGAGCAACACCTGNCACTGCACAGTATCCCCGTCCTGCTTCATATNNTCGGCATGGTTGGNNCACACGTTGAAAGTTAATTTTGGTATTTCAATACANACGCCTAGTGCATTNNTGACACTTTTTATCACTTGCTGTAAATATACAAAT]
[+] EMBL CD079827 [CTCGAGGGCCAAAATTCGGCACGAGGGAGGTTTTGGTTTTGTGACATATAAGGATTCTTCATCCGTTGATGCTGCACAAAACAATCGCCCACATACTGTAGATGGAAAAGAGGTAGATACCAAGCGTGCCATGCCCAGAGAAGAAACAAGTCCTGAGGTTCATGCTGCAGTGAAGAAAATATTTGTAGGTGCTTTGAAGAAAGATGTGACAAATGAAGACCTAAGTGATTACTTTTCTCAATTCGGGACTGTAACTGATGCTCAGATTGTTATAGCTAAAGATACGAATACATCACGGGGGTTCGCATTCGTTACATTTGATGACACAGATGCAGTAGACAAAGTTATCCTAGCTCGACCACATACTATCAAAGACTCCAAAGCAGATGTACGAAAAGCGCTCAGTCGAGAAGAAATGAACAAAATGAGGTCCAAACCTGCACCCATGAGAGCAGATTATAATGGCGGTGGCTGGCACGACAATGCAAACGGCGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAACCTTACGCACACCAACAGCCTTATGCTTATAACGGAGGAGGCTATGGTTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGGCAATTATCAGCAACAAGGCTATNGGTGGTGGTCCGATGAGAGCAACACCTGNCACTGCACAGTATCCCCGTCCTGCTTCATATNNTCGGCATGGTTGGNNCACACGTTGAAAGTTAATTTTGGTATTTCAATACANACGCCTAGTGCATTNNTGACACTTTTTATCACTTGCTGTAAATATACAAAT]
[-] EMBL CD148752 [ CACAAAACAATCGCCCACATACTGTAGATGGAAAAGAGGTAGATACCAAGCGTGCCATGCCCAGAGAAGAAACAAGTCCTGAGGTTCATGCTGCAGTGAAGAAAATATTTGTAGGTGCTNTGAAGAAAGATGTGACAAATGAAGACCTAAGTGATTACTTTTCTCAATTCGGGACTGTAACTGATGCTCAGATTGTTATAGCTAAAGATACGAATACATCACGGGGGTTCGCATTCGTTACATTTGATGACACAGATGCAGTAGA ]
[+] EMBL CD144367 [ GTAGATACCAAGCGTGCCATGCCCAGAGAAGAAACAAGTCCTGAGGTTCATGCTGCAGTGAAGAAAATATTTGTAGGTGCTTTGAAGAAAGATGTGACAAATGAAGACCTAAGTGATTACTTTTCTCAATTCGGGACTGTAACTGATGCTCAGATTGTTATAGCTAAAGATACGAATACATCACGGGGGTTCGCATTCGTTACACTTGATGACACAGATGCAGTAGACAAAGTTATCCTAGCTCGACCACATACTATCAAAGACTCCAAAGCAGATGTACGAAAAGCGCTCAGTCGAGAAGAAATGA ]
[+] EMBL CD132830 [ AGAGAAGAAAC AGTCCTGAGGTTCATGCTGCAGTGAAGAAAATATTTGTAGGTGCTTTGAAGAAAGATGTGACAAATGAAGACCTAAGTGATTACTTTTCTCAATTCGGGACTGTAACTGATGCTCAGATTGTTATAGCTAAAGATACGAATACATCACGGGGGTTCGCATTCGTTACATTTGATGACACAGATGCAGTAGACAAAGTTATCCTAGCTCGACCACATACTATCAAAGACTCCAAAGCAGATGTACGAAAAGCGCTCAGTCGAGAAGAAATGAGCAAAATGAGGTCCAAACCTGCACCCATGAGAGCAGATTATTATGGCGGTGGCTGGCACGACAATGCAAACGGCGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAAC ]
[+] EMBL CD144994 [ GTCCTGAGGTTCATGCTGCAGTGAAGAAAATACTTGTAGGTGCTTTGAAGAAAGATGTGACAAATGAAGACCTAAGTGATTACTTTTCTCAATTCGGGACTGTAACTGATGCTCAGATTGTTATAGCTAAAGATACGAATACATCACGGGGGTTCGCATTCGTTACATTTGATGACACAGATGCAGTAGACAAAGTTATCCTAGCTCGACCACATACTATCAAAGACTCCAAAGCAGATGTACGAAAAGCGCTCAGTCGAGAAGAAATGAACAAAATGAGGTCCAAACCTGCACCCATGAGAGCAGATTATAATGGCGGTGGCTGGCACGACAATGCAAACGGCGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAACCTTACGCACACCAACAGCCTTATGCTTATAACGGAGGAGGCTATGGTTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGGCAATTATCAGCAACA ]
[+] EMBL CD145112 [ GTCCTGAGGTTCATGCTGCAGTGAAGAAAATATTTGTAGGTGCCTTGAAGAAAGATGTGACAAATGAAGACCTAAGTGATTACTTTTCTCAATTCGGGACTGTAACTGATGCTCAGATTGTTATAGCTAAAGATACGAATACATCACGGGGGTTCGCATTCGTTACATTTGATGACACAGATGCAGTAGACAAAGTTATCCTAGCTCGACCACATACTATCAAAGACTCCAAAGCAGATGTACGAAAAGCGCTCAGTCGAGAAGAAATGAACAAAATGAGGTCCAAACCTGCACCCATGAGAGCAGATTATAATGGCGGTGGCTGGCACGACAATGCAAACGGCGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAACCTTACGCACACCAACAGCCTTATGCTTATAACGGAGGAGGCTATGGTTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGGCAATTATCAGCAACAg ]
[+] EMBL CD145043 [ GTCCTGAGGTTCATGCTGCAGTGAAGAAAATATTTGTAGGTGCTTTGAAGAAAGATGTGACAAATGAAGACCTAAGTGATTACTTTTCTCAATTCGGGACTGTAACTGATGCTCAGATTGTTATAGCTAAAGATACGAATACATCACGGGGGTTCGCATTCGTTACATTTGATGACACAGATGCAGTAGACAAAGTTATCCTAGCTCGACCACATACTATCAAAGACTCCAAAGCAGATGTACGAAAAGCGCTCAGTCGAGAAGAAATGAACAAAATGAGGTCCAAACCTGCACCCATGAGAGCAGATTATAATGGCGGTGGCTGGCACGACAATGCAAACGGCGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAACCTTACGCACACCAACAGCCTTATGCTTATAACGGAGGAGGCTATGGTTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGGGCATTATCAGCAACA ]
[-] EMBL CD177846 [ AGTGATTACTTTTCTCAATTCGGGACTGTAACTGATGCTCAGATTGTTATAGCTAAAGATACGAATACATCACGGGGGTTCGCATTCGTTACATTTGATGACACAGATGCAGTAGACAAAGTTATCCTAGCTCGACCACATACTATCAAAGACTCCAAAGCAGATGTACGAAAAGCGCTCAGTCGAGAAGAAATGGACAAAATGAGGTCCAAACCTGCACCCATGAGAGCAGATTATAATGGCGGTGGCTGGCACGACAATGCCAACGGCGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAACCTTACGCACACCAACAGCCTTATGGTTATAACGGAGGAGGCTATGGTTATGGCGGTTACGATAGAGGTTGCCC CCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGGCg ]
[-] EMBL CD143186 [ TTACATTTGATGACACAGATGCAGTAGACAAAGTTATCCTAGCTCGACCACATACTATCAAAGACTCCGAAGCAGATGTACGAAAAGCGCTCAGTCGAGAAGAAATGAACAAAATGAGGTCCAAGCCTGCTCCCATGAGAGCAGATTATAATGGCGGTGGCTGGCACGACAATGCAAACGGCGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAACCTTACGCACACCAACAGCCTTATGCTTATAACGGAGGAGGCTATGGTTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGGCAATTATCA ]
[-] EMBL CD142836 [ TTTGATGACCCAGATGCAGTAGACAAAGTTATCCTAGCTCGACCACATACTATCAAAGACTCCAAAGCAGATGTACGAAAAGCGCTCAGTCGAGAAGAAATGAACAAAATGAGGTCCAAACCTGCACCCATGAGAGCAGATTATAATGGCGGTGGCTGGCACGACAATGCAAACGGCGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAACCTTACGCACACCAACAGCCTTATGCTTATAACGGAGGAGGCTATGGTTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGT ]
[+] EMBL CD135181 [ ACCACATACTATCAAAGACTCCAAAGCAGATGTACGAAAAGCGCTCAGTCGAGAAGAAATGAACAAAATGAGGTCCAAACCTGCACCCATGAGAGCAGATTATAATGGCGGTGGCTGGCACGACAATGCAAACGGCGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAACCTTACGCACACCAACAGCCTTATGCTTATAACGGAGGAGGCTATGGTTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGGCAATTATCAGCAA ]
[-] EMBL CD142849 [ ACCAACAGCCATATGCTTATAACGGAGGAGGCTATGGTTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGG ]
consensusID : consensus_11166#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 625 fasta sequence
[TCACCACTGGCGCCATTTTGGTCCGTTTGTCAAAAAGGTATATTGACATGATGCGCCCGTTTATTGATTCTAAGGCTGACCAAGATAAAAAGCTGTTCATCG-GTGGTTTAAGTCCCAAGACCGATGAAAACTCACTCAAAAATTATTAC--GGTCAATGGGGTGAAATTATTGACGT-TGTAGTTATGAAGGATCCTAGATCACAAAAATCCCGAGGTTTTGGTTTTGTGACATATAAGGATTCTTCATCCGTTGATGCTGCACAAAACAATCGCCCACATACTGTAGATGGAAAAGAGGTAGATACCAAGCGTGCCATGCCCAGAGAAGAAACAAGTCCTGAGGTTCATGCTGCAGTGAAGAAAATATTTGTAGGTGCTTTGAAGAAAGATGTGACAAATGAAGACCTAAGTGATTACTTTTCTCAATTCGGGACTGTAACTGATGCTCAGATTGTTATAGCTAAAGATACGAATACATCACGGGGGTTCGCATTCGTTACATTTGATGACACAGATGCAGTAGACAAAGTTATCCTAGCTCGACCACATACTATCAAAGACTCCAAAGCAGATGTACGAAAAGCGCTCAGTCGAGAAGAAATGAACAAAATGAGGTCCAAACCTGC]
[+] EMBL CD185923 [TCACCACTGGCGCCATTTTGGTCCGTTTGTCAAAAAGGTATATTGACATGATGCGCCCGTTTATTGATTCTAAGGCTGACCAAGATAAAAAGCTGTTCATCG GTGGTTTAAGTCCCAAGACCGATGAAAACTCACTCAAAAATTATTAC GGTCAATGGGGTGAAATTATTGACGT TGTAGTTATGAAGGATCCTAGATCACAAAAATCCCGAGGTTTTGGTTTTGTGACATATAAGGATTCTTCATCCGTTGATGCTGCACAAAACAATCGCCCACATACTGTAGATGGAAAAGAGGTAGATACCAA ]
[+] EMBL CD095138 [ CACCACTGGCGCCATTTTGGTCCGTTTGTCAAAAAGGTATATTGACATGATGCGCCCGTTTATTGATTCTAAGGCTGACCAAGATAAAAAGCTGTTCATCG GTGGTTTAAGTCCCAAGACCGATGAATACTCACTCAAAAATTATTAC GGTCAATGGGGTGAAATTATTGACGT TGTAGTTATGAAGGATCCTAGATCACAAAAATCCCGAGGTTTTGGTTTTGTGACATATAAGGATTCTTCATCCGTTGATGCTGCACAAAACAATCGCCCACATACTGTAGATGGAAAAGAGGTAGATACCAAGCGTGCCATGCCCAGAGAAGAAACAAGTCCTGAGGTTCATGCTGCAGTGAAGAAAATATTTGTAGGTGCTTTGAAGAAAGATGTGACAAATGAAGACCTAAGTGATTACTTTTCTCAATTCGGGACTGTAACTGATGCTCAGATTGTTATAGCTAAAGATACGAATACATCACGGGGGTTCGCATTCGTTACATTTGATGACACAGATGCAGTAGACAAAGTTATCCTAGCTCGACCACATACTATCAAAGACTCCAAAGCAGATGTACGAAAAGCGCTCAGTCGAGAAGAAATGAACAAAATGAGGTCCAAACCTGC]
[+] EMBL CD185736 [ ACTGGCGCCATTTTGGTCCGTTTGTCAAAAAGGTATATTGACATGATGCGCCCGTTTATTGATTCTAAGGCTGACCAAGATAAAAAGCTGTTCATCG GTGGTTTAAGTCCCAAGACCGATGAGAACTCACTCAAAAATTATTAC GGTCAATGGGGTGAAATTATTGACGT TGTAGTTATGAAGGATCCTAGATCACAAAAATCCCGAGGTTTTGGTTTTGTGACATATAAGGATTCTTCATCCGTTGATGCTGCACAAAACAATCGCCCACATACTGTAGATGGAAAAGAGGTAGATACCAA ]
[+] EMBL CD148123 [ CTGGCGCCATTTTGGTCCGTTTGTCAAAAAGGTATATTGACATGATGCGCCCGTTTATTGATTCTAAGGCTGACCAAGATAAAAAGCTGTTCATCG GTGGTTTAAGTCCCAAGACCGATGAAAACTCACTCAAAAATTATTAC GGTCAATGGGGTGAAATTATTGACGT TGTAGTTATGAAGGATCCTAGAT ]
[+] EMBL CD148111 [ CTGGCGCCATTTTGGTCCGTTTGTCAAAAAGGTATATTGACATGATGCGCCCGTTTATTGATTCTAAGGCTGACCAAGATAAAAAGCTGTTCATCG GTGGTTTAAGTCCCAAGACCGATGAAAACTCACTCAAAAATTATTAC GGTCAATGGGGTGAAATTATTGACGT TGTAGTTATGAAGGATCCTAGAT ]
[-] EMBL CD182187 [ CATCGTNNGGTTNAAGTCNCAAGANCGATGAAAACTCACTCAANAA TA TACNNNGTCATNGGGGTGAAATTA TGACGTNNGTAGTTATGAAGGATCCTAGATCACAAAAATCCCGAGGTTTTGGTTTTGTGACGTATAAGGATTCTTCATCCGTTGATGCTGCACAAAACAATCGCCCACATACTGTAGATGGAAAAGAGGTAGATACCAAGCGTGCCATGCCCAGAGAAGAAACAAGTCCTGAGGTTCATGCTGCAGTGAAGAAAATATTTGTAGGTGCTTTGAAGAAAGATGTGACAAATGAAGACCTAAGTGATTACTTTTCTCAATTCGGGACTGTAACTGATGCTCAGATTGTTATAGCTAAAGATACGAATACATCACGGGGGTTCGCATTCGTTACATTTGATGACACAGATGCAGTA ]
[+] EMBL CD145443 [ AAACTCACTCAAAAATTATTAC GGTCAATGGGGTGAAATTATTGACGT TGTAGTTATGAAGGATCCTATATCACAAAAATCCCGAGGTTTTGGTTTTGTGACATATAAGGATTCTTCATCCGTTGATGCTGCACAAAACAATCGCCCACATACTGTAGATGGAAAAGAGGTATATACCAAGCGTGCCATGCCCAGAGAAGAAACAAGTCCTGAGGTTCA ]
[-] EMBL CD144914 [ aATAAC GGTCAATGGGGTGAAATNATNGACGT GGTAGTTATGAAGGATCCTAGATCACAAAAATCCCGAGGTTTTGGTTTTGTGACATATAAGGATTCTTCATCCGTTGATGCTGCACAAAACAATCGCCCACATACTGTAGATGGAAAAGAGGTAGATACCAAGCGTGCCATGCCCAGAGAAGAAACAAGTCCTGAGGTTCATGCTGCAGTGAAGAAAATATTTGTAGGTGCTTTGAAGAAAGATGTGACAAATGAAGACCTAAGTGATTACTTTTCTCAATTCGGGACTGTAACTGATGCTCAGATTGTTATAGCTAAAGATACGAATACATCACGGGGGTTCGCATTCG ]
[-] EMBL CD157361 [ ATTAC GGTCAATGGGGCGAAATTATTGACGT TGTAGTTATGAAGGATCCTAGATCACAAAAATCCCGAGGTTTTGGTTTTGTGACATATAAGGATTCTTCATCCGTTGATGCTGCACAAAACAATCGCCCACATACTGTAGATGGAAAAGAGGTAGATACCAAGCGTGCCATGCCCAGAGAAGAAACAAGTCCTGAGGTTCATGCTGCAGTGAAGAGAATATTTGTAGGTGCTTTGAAGAAAGATGTGACAAATGAAGACCTAAGTGATTACTTTTCTCAATTCGGGACTGTAACTGATGCTCAGATTGTTATAGCTAAAGATACGAATACATCACGGGGGTTCGCATTCGTTACATTTGATGACA ]
[+] EMBL CD142027 [ TTGACGT TGTAGTTATGAAGGATCCTAGATCACAAAAATCCCGAGGTTTTGGTTTTGTGACATATAAGGATTCTTCATCCGTTGATGCTGCACAAAACAATCGCCCACATACTGTAGATGGAAAAGAGGTAGATACCAAGCGTGCCATGCCCAGAGAAGAAACAAGTCCTGAGGTTCATGCTGCAGTGAAGAAAATATTTGTAGGTGCTTTGAAGAAAGATGTGACAAATGAAGACCTAAGTGATTACTTTTCTCAATTCGGGACTGTAACTGATGCTCAGATTGTTATAGCTAAAGATACGAATACATCACGGGGGTTCGCATTCGTTACATTTGATGACACAGATGCAGTAGACAAAGTTATCCTAGCTCGACCACATACTATCAAAGACTCCAAAGCAGATGTACGAAAAGCGCTCAGTCGAGAAGAAATGAACANAATGAGGTC ]
[+] EMBL CD142065 [ TTGACGT TGTAGTTATGAAGGATCCTAGATCACAAAAATCCCGAGGTTTTGGTTTTGTGACATATAAGGATTCTTCATCCGTTGATGCTGCACAAAACAATCGCCCACATACTGTAGATGGAAAAGAGGTAGATACCAA ]
[-] EMBL CD142083 [ TGACGT TGTAGTTATGAAGGATCCTAGATCACAAAAATCCCGAGGTTTTGGTTTTGTGACATATAAGGATTCTTCATCCGTTGATGCTGCACAAAACAATCGCCCACATACTGTAGATGGAAAAGAGGTAGATACCAAG ]
[-] EMBL CD142039 [ TGACGT TGTAGTTATGAAGGATCCTAGATCACAAAAATCCAGAGGTTTTGGTTTTGTGACATATAAGGATTCTTCATCCGTTGATGCTGCACAAAACAATCGCCCACATACTGTAGATGGAAAAGAGGTAGATACCAAG ]
consensusID : consensus_11166#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 189 fasta sequence
[GCTCCATATTCCGGCAATGGTTGGCAACAAAGTTGAAGTTAATTTTGTTATTTAAAAACCAAAGGCCTAGTGCATTTTGACAACTTTTTATCACTTGCTGTAAAATATACAAATCAGTTATTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGTTGCATTACCGTACTGCGTA]
[-] EMBL AI975147 [GCTCCATATTCCGGCAATGGTTGGCAACAAAGTTGAAGTTAATTTTGTTATTTAAAAACCAAAGGCCTAGTGCATTTTGACAACTTTTTATCACTTGCTGTAAAATATACAAATCAGTTATTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGTTGCATTACCGTACTGCGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11166#0 AGCAGANATAATGGCGGTGGCTGGCACGACAATGCAAACGGCGGTTTCCAGCCTCAGTCA 60
consensus_11166#3 ------------------------------------------------------------
consensus_11166#1 ------------------------------------------------------------
consensus_11166#2 ------------------------------------------------------------
consensus_11166#0 TGGGAACAGGGTTATAGTCAACCTTACGCACACCAACAGCCTTATGCTTATAACGGAGGA 120
consensus_11166#3 ------------------------------------------------------------
consensus_11166#1 ------------------------------------------------------------
consensus_11166#2 ------------------------------------------------------------
consensus_11166#0 GGCTATGGTTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCT 180
consensus_11166#3 ------------------------------------------------------------
consensus_11166#1 ------------------------------------------------------------
consensus_11166#2 ------------------------------------------------------------
consensus_11166#0 GATGGGTTCGGCAATTATCAGCAACAAGGCTATGGTGGTGGTCCGATGAGAGCAACACCT 240
consensus_11166#3 ------------------------------------------------------------
consensus_11166#1 ------------------------------------------------------------
consensus_11166#2 ------------------------------------------------------------
consensus_11166#0 GCAACTGCACAGTATCCCCGTCCTGCTCCATATTCCGGCAATGGTTGGCAACAACGTTGA 300
consensus_11166#3 ------------------------------------------------------------
consensus_11166#1 ------------------------------------------------------------
consensus_11166#2 ------------------------------------------------------------
consensus_11166#0 AGTTAATTTTGTGACATATAAGGATTCTTCATCCGTTGATGCTGCACAAAACAATCGCCC 360
consensus_11166#3 ------------------------------------------------------------
consensus_11166#1 ------------------------------------------------------------
consensus_11166#2 ------------------------------------------------------------
consensus_11166#0 ACATACTGTAGATGGAAAAGAGGTAGATACCAAGCGTGCCATGCCCAGAGAAGAAACAAG 420
consensus_11166#3 ------------------------------------------------------------
consensus_11166#1 ------------------------------------------------------------
consensus_11166#2 ------------------------------------------------------------
consensus_11166#0 TCCTGAGGTTCATGCTGCAGTGAAGAAAATATTTGTAGGTGCTTTGAAGAAAGATGTGAC 480
consensus_11166#3 ------------------------------------------------------------
consensus_11166#1 ------------------------------------------------------------
consensus_11166#2 ------------------------------------------------------------
consensus_11166#0 AAATGAAGACCTAAGTGATTACTTTTCTCAATTCGGGACTGTAACTGATGCTCAGATTGT 540
consensus_11166#3 ------------------------------------------------------------
consensus_11166#1 ------------------------------------------------------------
consensus_11166#2 ------------------------------------------------------------
consensus_11166#0 TATAGCTAAAGATACGAATACATCACGGGGGTTCGCATTCGTTACATTTGATGACACAGA 600
consensus_11166#3 ------------------------------------------------------------
consensus_11166#1 ------------------------------------------------------------
consensus_11166#2 --TCACCACTGGCGCCATTTTGGTCCGTTTGTCAAAAAGGTATATTGACATGATGCGCCC 58
consensus_11166#0 TGCAGTAGACAAAGTTATCCTAGCTCGACCACATACTATCAAAGACTCCAAAGCAGATGT 660
consensus_11166#3 ------------------------------------------------------------
consensus_11166#1 ------------------------------------------------------------
consensus_11166#2 GTTTATTGATTCTAAGGCTGACCAAGATAAAAAGCTGTTCATCGGTGGTTTAAGTCCCAA 118
consensus_11166#0 ACGAAAAGCGCTCAGTCGAGAAGAAATGAACAAAATGAGGTCCAAACCTGCACCCATGAG 720
consensus_11166#3 ------------------------------------------------------------
consensus_11166#1 ------------------------------------------------------------
consensus_11166#2 GACCGATGAAAACTCACTCAAAAATTATTACGGTCAATGGGGTGAAATTATTGACGTTGT 178
consensus_11166#0 AGCAGATTATAATGGCGGTGGCTGGCACGACAATGCAAACGGCGGTTTCCAGCCTCAGTC 780
consensus_11166#3 ------------------------------------------------------------
consensus_11166#1 ------CTCGAGGGCCAAAATTCGGCACGAGGGAGGTTTTGGTTTTGTGACATATAAGGA 54
consensus_11166#2 AGTTATGAAGGATCCTAGATCACAAAAATCCCGAGGTTTTGGTTTTGTGACATATAAGGA 238
consensus_11166#0 ATGGGAACAGGGTTATAGTCAACCTTACGCACACCAACAGCCTTATGCTTATAACGGAGG 840
consensus_11166#3 ------------------------------------------------------------
consensus_11166#1 TTCTTCATCCGTTGATGCTGCACAAAACAATCGCCCACATACTGTAGATGGAAAAGAGGT 114
consensus_11166#2 TTCTTCATCCGTTGATGCTGCACAAAACAATCGCCCACATACTGTAGATGGAAAAGAGGT 298
consensus_11166#0 AGGCTATGGTTATGGCGGTTACGATGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATC 900
consensus_11166#3 ------------------------------------------------------------
consensus_11166#1 AGATACCAAGCGTGCCATGCCCAGAGAAGAAACAAGTCCTGAGGTTCATGCTGCAGTGAA 174
consensus_11166#2 AGATACCAAGCGTGCCATGCCCAGAGAAGAAACAAGTCCTGAGGTTCATGCTGCAGTGAA 358
consensus_11166#0 TGATGGGTTCGGCAATTATCAGCAACAAGGCTATGGTGGTGGTCCGATGAGAGCAACACC 960
consensus_11166#3 ------------------------------------------------------------
consensus_11166#1 GAAAATATTTGTAGGTGCTTTGAAGAAAGATGTGACAAATGAAGACCTAAGTGATTACTT 234
consensus_11166#2 GAAAATATTTGTAGGTGCTTTGAAGAAAGATGTGACAAATGAAGACCTAAGTGATTACTT 418
consensus_11166#0 TGCAACTGCACAGTATCCCCGTCCTGCTCCA--TATTCCGGCAATGGTTGGCAACAAC-- 1016
consensus_11166#3 -------------------------GCTCCA--TATTCCGGCAATGGTTGGCAACAAA-- 31
consensus_11166#1 TTCTCAATTCGGGACTGTAACTGATGCTCAGATTGTTATAGCTAAAGATACGAATACATC 294
consensus_11166#2 TTCTCAATTCGGGACTGTAACTGATGCTCAGATTGTTATAGCTAAAGATACGAATACATC 478
**** * ** ** * * * ** *
consensus_11166#0 GTTGAAGTTAAT-TTTGTTAT-TTCAATACCAAACGCCTAGTGCATTTTGACAACTT--- 1071
consensus_11166#3 GTTGAAGTTAAT-TTTGTTAT-TTAAAAACCAAAGGCCTAGTGCATTTTGACAACTT--- 86
consensus_11166#1 ACGGGGGTTCGCATTCGTTACATTTGATGACACAGATGCAGTAGACAAAGTTATCCTAGC 354
consensus_11166#2 ACGGGGGTTCGCATTCGTTACATTTGATGACACAGATGCAGTAGACAAAGTTATCCTAGC 538
* *** ** **** ** * ** * *** * * * * *
consensus_11166#0 TTTATCACTTGCTGTAAAATA-TACAAATCAGTTATTC------------AAAAAAAAAA 1118
consensus_11166#3 TTTATCACTTGCTGTAAAATA-TACAAATCAGTTATTTTTAAAA-----AAAAAAAAAAA 140
consensus_11166#1 TCGACCACATACTATCAAAGACTCCAAAGCAGATGTACGAAAAGCGCTCAGTCGAGAAGA 414
consensus_11166#2 TCGACCACATACTATCAAAGACTCCAAAGCAGATGTACGAAAAGCGCTCAGTCGAGAAGA 598
* * *** * ** * *** * * **** *** * * * ** *
consensus_11166#0 AAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACT---------------- 1162
consensus_11166#3 AAAAAAAAAAAAAAAAACATGCCATGCAGTTGCATTACCGTACTGCGTA----------- 189
consensus_11166#1 AATGAACAAAATGAGGTCCAAACCTGCACCCATGAGAGCAGATTATAATGGCGGTGGCTG 474
consensus_11166#2 AATGAACAAAATGAGGTCCAAACCTGC--------------------------------- 625
** ** **** * * * ***
consensus_11166#0 ------------------------------------------------------------
consensus_11166#3 ------------------------------------------------------------
consensus_11166#1 GCACGACAATGCAAACGGCGGTTTCCAGCCTCAGTCATGGGAACAGGGTTATAGTCAACC 534
consensus_11166#2 ------------------------------------------------------------
consensus_11166#0 ------------------------------------------------------------
consensus_11166#3 ------------------------------------------------------------
consensus_11166#1 TTACGCACACCAACAGCCTTATGCTTATAACGGAGGAGGCTATGGTTATGGCGGTTACGA 594
consensus_11166#2 ------------------------------------------------------------
consensus_11166#0 ------------------------------------------------------------
consensus_11166#3 ------------------------------------------------------------
consensus_11166#1 TGGAGGTTGCCCTGCAGGTGGTTGGCCTAATGCATCTGATGGGTTCGGCAATTATCAGCA 654
consensus_11166#2 ------------------------------------------------------------
consensus_11166#0 ------------------------------------------------------------
consensus_11166#3 ------------------------------------------------------------
consensus_11166#1 ACAAGGCTATNGGTGGTGGTCCGATGAGAGCAACACCTGNCACTGCACAGTATCCCCGTC 714
consensus_11166#2 ------------------------------------------------------------
consensus_11166#0 ------------------------------------------------------------
consensus_11166#3 ------------------------------------------------------------
consensus_11166#1 CTGCTTCATATNNTCGGCATGGTTGGNNCACACGTTGAAAGTTAATTTTGGTATTTCAAT 774
consensus_11166#2 ------------------------------------------------------------
consensus_11166#0 -------------------------------------------------------
consensus_11166#3 -------------------------------------------------------
consensus_11166#1 ACANACGCCTAGTGCATTNNTGACACTTTTTATCACTTGCTGTAAATATACAAAT 829
consensus_11166#2 -------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||