|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11171#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 35 consensus length = 1401 fasta sequence [ATTTATTCACAACTTTGAAACCGGTAACAATTATAAAGGAACATTTACAAAATCACGGGCCGCTCATTTAGATTAAATCTAGGAGCAAACTCTTACAATGCAGATTTTTCGCCATTTAATGCAACCCCGTCTTTATGCTCTTCAACACCATCCAGTCCAGAGTCTTTACAGCGCTCAAAAATACTTCGGAACCTTTTCTTTGCCATATCTTTGGCCTTTTGAATCTCTTCTTCACACATATGCAGCAGCTTTACAGCCGATGCATTGTTGGGATTCTTTGCTACAATCTTCTTGAAATAAACCAATGCCTCATCGTGGTCGTTACGCAGTAGATGCGCCTGACCCATCCTGAATAACGCCTTTTCGTTGTTACCAAAAACGTCCAACACCTTCCGGCAGAACTCAATACATTTATCTGGTTTACATAGCTTCAGGTAAGTCAAACCTAAATTAAGTCGGACGGCTACAATAACTGCGGATAATTCCTTTTGCTCTGCAGGGCCATTAGCCAC-AATGTACTGCAACTCATCATCTAAACGTTTGTACAATTCAATAGCAGAATCAAATTTAGAATCCTTTAGAAAGTTGTTCGCTTTTTCTTTCAGTACATTTGCATACGCCATCTGCTCTGAAAATGGTGAGATACCAGATAGATGTTTAGTCTTCTCAAAAGACTTGAGCGTTAATTCATAAACCACCCGACTTTTGTCTGCAACTTCAGCTGCTGAATTTTTATCTTTGCAGACCACAACACGACAAAACTCATCTGTACTCATATGACGAAGACATTGATCCAACTCTTCTGGCACAGTTAACGGGGGATCGCCGACGCAATATGTCACCTCCACATCCTCTGTTGAATCCGTCAGATTGCGGAAG-ACAATTGTGGC-CTCGGC-ACCAGCAACAG-G-ATTGTAGATA-TCCTTCC-CT-TTCCTAATAATTGATTTGCGAATACTTCCATCCTTGT-TTCTGCTGACAT-CAGAGCCCAAGGTT-TCGAAAAGCTCCACCTCAAATTTTAGAGTTTTCCCATCTTTGTAAGCATAATCAGGAGACGCAATTAGTTCACAAATTTCTCCCAACTTCATTGTAGCGACACCGACATCCCAAGCCTTTATTACACTGCCATTTCCAATAGTAAATTCAAACTTCTCATTTCGAGCCCTACTTGAGTCAAAGACCTCACCGTGTTTTTCTCCACCATAGTTGGTTCCAACATAATGTACAATCACAGTGTCGCCATCACATGGCTTGACGTCAGAATAGCCCTCTCGCAATACTTTTTTGAGGATGCCACGATCACCAGATGGGC-TTAAA-TCCATGAAATCCTT-TAGATATTCATCTTCGACCCGTTGCTGGGCTCCAGACTCCTGACCATCATTATCAGCCATTCCGCTGACGCTTTCA] [-] EMBL SMIMM [ATTTATTCACAACTTTGAAACCGGTAACAATTATAAAGGAACATTTACAAAATCACGGGCCGCTCATTTAGATTAAATCTAGGAGCAAACTCTTACAATGCAGATTTTTCGCCATTTAATGCAACCCCGTCTTTATGCTCTTCAACACCATCCAGTCCAGAGTCTTTACAGCGCTCAAAAATACTTCGGAACCTTTTCTTTGCCATATCTTTGGCCTTTTGAATCTCTTCTTCACACATATGCAGCAGCTTTACAGCCGATGCATTGTTGGGATTCTTTGCTACAATCTTCTTGAAATAAACCAATGCCTCATCGTGGTCGTTACGCAGTAGATGCGCCTGACCCATCCTGAATAACGCCTTTTCGTTGTTACCAAAAACGTCCAACACCTTCCGGCAGAACTCAATACATTTATCTGGTTTACATAGCTTCAGGTAAGTCAAACCTAAATTAAGTCGGACGGCTACAATAACTGCGGATAATTCCTTTTGCTCTGCAGGGCCATTAGCCAC AATGTACTGCAACTCATCATCTAAACGTTTGTACAATTCAATAGCAGAATCAAATTTAGAATCCTTTAGAAAGTTGTTCGCTTTTTCTTTCAGTACATTTCGATACGCCATCTGCTCTGAAAATGGTGAGATACCAGATAGATGTTTAGTCTTCTCAAAAGACTTGAGCGTTAATTCATAAACCACCCGACTTTTGTCTGCAACTTCAGCTGCTGAATTTTTATCTTTGCAGACCACAACACGACAAAACTCATCTGTACTCATATGACGAAGACATTGATCCAACTCTTCTGGCACAGTTAACGGGGGATCGCCGACGCAATATGTCACCTCCACATCCTCTGTTGAATCCGTCAGATTGCGGAAG ACAATTGTGGC CTCGGC ACCAGCAACAG G ATGGTAGATA TCCTTCC CT TTCCTAATAATTGATTTGCGAATACTTCCATCCTTGT TTCTGCTGACAT CAGAGCCCAAGGTT TCGAAAAGCTCCACCTCAAATTTTAGAGTTTTCCCATCTTTGTAAGCATAATCAGGAGACGCAATTAGTTCACAAATTTCTCCCAACTTCATTGTAGCGACACCGACATCCCAAGCCTTTATTACACTGCCATTTCCAATAGTAAATTCAAACTTCTCATTTCGAGCCCTACTTGAGTCAAAGACCTCACCGTGTTTTTCTCCACCATAGTTGGTTCCAACATAATGTACAATCACAGTGTCGCCATCACATGGCTTGACGTCAGAATAGCCCTCTCGCAATACTTTTTTGAGGATGCCACGATCACCAGATGGGC TTAAA TCCATGAAATCCTT TAGATATTCATCTTCGACCCGTTGCTGGGCTCCAGACTCCTGACCATCATT ] [+] EMBL BF936869 [ AACTTTGAAACCGGTAACAATTATAAAGGAACATTTACAAAATCACGGGCCGCTCATTTAGATTAAATTTAGGAGCAAACTCTTACAATGCAGATTTTTCGCCATTTAATGCAACCCCGTCTTTATGCTCTTCAACACCATCCAGTCCAGAGTCTTTACAGCGCTCAAAAATACTTCGGAACCTTTTCTTTGCCATATCTTTGGCCTTTTGAATCTCTTCTTCACACATATGCAGCAGCTTTACAGCCGATGCATTGTTGGGATTCTTTGCTACAATCTTCTTGAAATAAACCAATGCCTCATCGTGGTCGTTACGCAGTAGATGCGCCTGACCCATCCTGAATAACGCCTTTTCGTTGTTACCAAAAACGTCCAACACCTTCCGGCAGAACTCAATACATTTATCTGGTTTACATAGCTTCAGGTAAGTCAAACCTAAATTAAGTCGGACGGCTACAATAACTGCGGATAATTCCTTTTGCTCTGCAGGGCCATTAGCCAC AATGTACTGCAACTCATCATCTAAACGTTTGTACAATTCAATAGCAGAATCAAATTTAGAATCCTTTAGAAAGTTGTTCGCTTTTTCTTTCAGTACATTTGCATACGCCATCTGCTCTGAAAATGGTGAGATACCAGATAGATGTTTAGTCTTCTC AAAGACTTGAGCGTTAATTCAT AACCACCCGACTTTTGTCTGCAACTTCAGCTGCTGAATTTTTATCTTTGCAGACCACCACACGACA ] [-] EMBL CD124446 [ TCCAGTCCAGAGTCTTTACAGCGCTCAAAAATACTTCGGAACTTTNTCTTTGCCATATCTTTGGCCTTTTGAATCTCTTCTTCACACATATGCAGCAGCTTTACAGCCGATGCATTGTTGGGATTCTTTGCTACAATCTTCTTGAAATAAACCAATGCCTCATCGTGGTCGTTACGCAGTAGATGCGCCTGACCCATCCTGAATAACGCCTTTTCGTTGTTACCAAAAACGTCCAACACCTTCCGGCAGAACTCAATACATTTATCTGGTTTACATAGCTTCAGGTAAGTCAAACCTAAATTAAGTCGGACGGCTACAATAACTGCGGATAATTCCTTTTGCTCTGCAGGGCCATTAGCCAC AATGTACTGCAACTCATCATCTAAACGTTTGTACAATTCAATAGCAGAATCAAATTTAGAATCCTTTAGAAAGTTGTTCGCTTTTTCGTTCAGTACATTTGCATACGCC ] [-] EMBL AI976936 [ CCTTTTCTTTGCCATATCTTTGGCCTTTTGAATCTCTTCTTCACACATATGCAGCAGCTTTACAGCCGATGCATTGTTGGGATTCTTTGCCACAATCTTCTTGAAATAAACCAATGCCTCATCGTGGTCGTTACGCAGTAGATGCGCCTGACCCATCCTGAATAACGCCTTTTCGTTGTTACCAAAAACGTCCAACACCTTCCGGCAGAACTCAATACATTTATCTGGTTTACATAGCTTCAGGTAAGTCAAACCTAAATTAAGTCGGACGGCTACAATAACTGCGGATAATTCCTTT ] [+] EMBL CD171113 [ GAAATAAACCAATGCCTCATCGTGGTCGTTACGCAGTAGATGCGCCTGACCCATCCTGAATAACGCCTTTTCGTTGTTACCAAAAACGTCCAACACCCTCCGGCAGAACTCAATACATTTATCTGGTTTACATAGCTTCAGGTAAGTCAAACCTAAATTAAGTCGGACGGCTACAATAACTGCGGATAATTCCTTTTGCTCTGCAGGGCCATTAGCCAC AATGTACTGCAACTCATCATCTAAACGTTTGTACAATTCAATAGCAGAATCAAATTTAGAATCCTTTAGAAAGTTGTTCGCTTTTTCTTTCAGTACATTTGCATACGCCATCTGCTCTGAAAATGGTGAGATA CAGATAGATGTTT ] [-] EMBL CD097861 [ TTTCGTTGTTACCAAAAACGTCCAACACCTTCCGGCAGAACTCAATACATTTATCTGGTTTACATAGCTTCAGGTAAGTCAAACCTAAATTAAGTCGGACGGCTACAATAACTGCGGATAATTCCTTTTGCTCTGCAGGGCCATTAGCCAC AATGTACTGCAACTCATCATCTAAACGTTTGTACAATTCAATAGCAGAATCAAATTTAGAATCCTTTAGAAAGTTGTTCGCTTTTTCTTTCAGTACATTTGCATACGCCATCTGCTCTGAAAATGGTGAGATACCAGATAGATGTTTAGTCTTCTCAAAAGACTTGAGCGTTAATTC ] [+] EMBL CD090123 [ TGTTACCAAAAACGTCCAACACCTTCCGGCAGAACTCAATACATTTATCTGGTTTACATAGCTTCAGGTAAGTCAAACCTAAATTAAGTTGGACGGCTACAATAACTGCGGATAATTCCTTTTGCTCTGCAGGGCCATTAGCCAC TATGTACTGCAACTCATCATCTAAACGTTTGTACAATTCAATAGCAGAATCAAATTTAGAGTCCTTTAGAAATTTGTTCGCTTTTTCTTTCAGCACATTTGCATAGGCCATCTGCTCTGAAAATGGTGAGATACCAGATAGATGTTTAGTCTTTTCAAAAGACTTGAGCGTTAATTCGTAAACTACCCGACTTTTGTCTGCAACTTCAGCTGCTGAATTTTTATCTTTGCAGACCATAACACGAC ] [-] EMBL CD112864 [ TACCAAAAACGTCCAACACCTTCCGGCAGAACTCAATACATTTATCTGGTTTACATAGCTTCAGGTAAGTCAAACCTAAATTAAGTTGGACGGCTACAATAACTGCGGATAATTCCTTTTGCTCTGCAGGGCCATTAGCCAC TATGTACTGCAACTCATCATCTAAACGTTTGTACAATTCAATAGCAGAATCAAATTTAGAGTCCTTTAGAAATTTGTTCGCTTTTTCTTTCAGCACATTTGCATAGGCCATCTGCTCTGAAAATGGTGAGATACCAGATAGATGTTTAGTCTTTTCAAAAGACTTGAGCGTTAATTCGTAAACTACCCGACTTTTGTCTGCAACTTCAGCTGCTGAATTTTTATCTTTGCAGACCATAACACGACTGAACTCATCTGTATTCATATGACGAACACATTGATCCAACTCTTCTGGCACAGTTAACGAGGGGTCGCCGACGCAATACGCCACCTC CATCCTCTG TGAATCCGTCAAATTGCGGAAG ] [-] EMBL CD128427 [ TTTACATAGCTTCAGGTAAGTCAAACCTAAATTAAGTTGGACGGCTACAATAACTGCGGATAATTCCTTTTGCTCTGCAGGGCCATTAGCCAC TATGTACTGCAACTCATCATCTAAACGTTTGTACAATTCAATAGCAGAATCAAATTTAGAGTCCTTTAGAAATTTGTTCGCTTTTTCTTTCAGCACATTTGCATAGGCCATCTGCTCTGAAAATGGTGAGATACCAGATAGATGTTTAGTCTTTTCAAAAGACTTGAGCGTTAATTCGTAAACTACCCGACTTTTGTCTGCAACTTCAGCTGCTGAATTTTTATCTTTGCAGACCATAACACGACTGAACTCATCTGTATTCATATGACAAACACATTGATCCGACTCTTCT ] [-] EMBL CD152731 [ GGCCATTAGCCAC AATGTACTGCAACTCATCATCTAAACGTTTGTACAATTCAATAGCAGAATCAAATTTAGAATCCTTTAGAAAGTTGTTCGCTTTTTCTTTCAGTACATTTGCATACGCCATCTGCTCTGAAAATGGTGAGATACCAGATAGATGTTTAGTCTTCTCAAAAGACTTGAGCGTTAATTCATAAACCACCCGACTTTTGTCTGCAACTTCAGCTGCTGAATTTTTATCTTTGCAGACCACAACACGACAAAACTCATCTGTACTCATATGACGAAGACATTGATCCAACTCTTCTGGCACAGTTAACGGGGGATCGCCGACGCAATATGTCAC ] [-] EMBL CD148887 [ taAGCCACNAATGTATTGCNACTCATCATTTAACCGTTTGTACAATTCAATAGCAGAATCAAATTTAGAATCCTNTAGAAAGTTGTTCGCTTTTTCTTCAAGTACATTTGCATACGCCATCTGTTNTGAAAATGGTGAGATACCAGATAGATGTTTAGTCTTCTCAAAAGACTTGAGCGTTAATTCATAAACCACCCGACTTTTGTCTGCAACTTCAGCTGCTGAATTTTTATCTTTGCAGACCACAACACGACAAAACTCATCTGTACTCATATGACGAAGACATTGATCCAACTCTTCTGGCACAGTTAACGGGGGATCGCCGACGCAATATGTCACCTCCACATCCTCTGTTGAATCCGTCAGATTGCGGAAG ACAATTGTGGC CTCGGC ACCAGCAACAG G ATTGTAGATA TCCTTCC CT TTCCTAATAATTGATTTGCGAATACTTCCATCCTTGT TTCTGCTGACAT CAGAGCC ] [-] EMBL CD147583 [ aTACAATTCAATAGCAGAATCAAATTTAGAATCCTTTAGAAAGTTGTTCGCTTTTTCTTTCAGTACATTNGCATACGCNATCTGCTCTGAAAATGGTGAGATACCAGATAGATGTTTAGTCTTCTCAAAAGACTTGAGCGTTAATTCATAAACCACCCGACTTTNGTCTGCAACTTCAGCTGCTGAATTTTNATCTTTGCAGACCACAACACGACAATACACATCTGTACTCATATGACGAAGACATTGATCCAACTCTTCTGGCACAGTTAACGGGGGATCGCCGACGCAATATGTCACCTCCACATCCTCTGTTGAATCCGTCAGATTGCGGA ] [-] EMBL CD115844 [ AATAGCAGAATCAAATTTAGAATCCTTTAGAAAGTTGTTCGCTTTTTCTTTCAGTACATTTGCATACGCCATCTGCTCTGAAAATGGTGAGATACCAGATAGATGTTTAGTCTTCTCAAAAGACTTGAGCGTTAATTCACAAACCACCCGACTTTTGTCTGCAACTTCAGCTGCTGAATTTTTATCTTTGCAGACCACAACACGACAAAACTCATCTGTACTCATATGACGAAGACATTGATCCAACTCTTCTGGCACAGTTAACGGGGGATCGCCGACGCAATATGTCACCTCCACATCCTCTGTTGAATCCGTCAGATTGCGGAAG ACAATTGTGGC CTCGGC ACCAGCAACAG G ATTGTAGATA TCCTTCC CT TTCCTAATAATTGATTTGCGAATACTTCCATCCTTGT TTCTGCTGACAT CAGAGCCC ] [-] EMBL CD153800 [ AATAGCAGAATCAAATTTAGAGTCCTTTAGAAATTTGTTCGCTTTTTCTTTCAGCACATTTGCATAGGCCATCTGCTCTGANAATGGTGAGATACCAGATAGATGTTTAGTCTCTTCAAAAGACTTGAGCGTTAATTCGTAAACTACCCGACTTTTGTCTGCAACTTCAGCTGCTGAATTTTTATCTTTGCAGACCATAACACGACTGAACTCATCTGTATTCATATGACGAACACATTGATCCAACTCTTCTGGCACAGTTAACGAGGGGTCGCCGACGCAATACGTCACCTCCACATCCTCTGTTGAATCCGTCAAATTGCGGAAG ACAATTGTGGC TTCAGC GCCAGCAACAG G ATTGTAGATA TCCTTCC CT TTCCTAAGAACTGATTTGCGAATACTTCCATCCTTGT TTCTGCTGACAT CAGAGCCCAAGGTT TCGAAAAGCTCCACCTCAAACTTTAGAGTTTTCCCATCTTTGTAAGCATAATCAGGAGACGCAATTAGTTCACAA ] [-] EMBL CD154136 [ AATAGCAGAATCAAATTTAGAGTCCTTTAGAAATTTGTTCGCTTTTTCTTTCAGCACATNTGCATAGGCCATCTGCTCTGAAAATGGTGAGATACCAGATAGATGTTTAGTCTTTTCAAAAGACTTGAGCGTTAATTCGTAAACTACCCGACTTTTGTCTGCAACTTCAGCTGCTGAATTTTTATCTTTGCAGACCATAACACGACTGAACTCATCTGTATTCATATGACGAACACATTGATCCAACTCTTCTGGCACAGTTAACGAGGGGTCGCCGACGCAATACGTCACCTCCACATCCTCTGTTGAATCCGTCAAATTGCGGAAG ACAATTGTGGC TTCAGC GCCAGCAACAG G ATTGTAGATA TCCTTCC CT TTCCTAAGAACTGATTTGCGAATACTTCCATCCTTGT TTCTGCTGACAT CAGAGCCCAAGGTT TCGAAAAGCTCCACCTCAAACTTTAGAGTTTTCCCATCTTTGTAAGCATAATCAGGAGACGCAATTAGTTCACAAGTTTCTCCCAACTTCATTGTAGCGACACCGACATCCCAA ] [-] EMBL CD152669 [ TTTAGAATCCTTTAGAAAGTTGTTCGCTTTTTCTTTCAGTACATTTGCATACGCCATCTGCTCTGAAAATGGTGAGATACCAGATAGATGTTTAGTCTTCTCAAAAGACTTGAGCGTTAATTCATAAACCACCCGACTTTTGTCTGCAACTTCAGCTGCTGAATTTTTATCTTTGCAGACCACAACACGACAAAACTCATCTGTACTCATATGACGAAGACATTGATCCAACTCTTCTGGCACAGTTAACGGGGGATCGCCGACGCAATATGTCAC ] [-] EMBL CD153945 [ CATACGCCATCTGCTCTGAAAATGGTGAGATACCAGATAGATGTTTAGTCTTCTCAAAAGACTTGAGCGTTAATTCATAAACCACCCGACTTTTGTCTGCAACTTCAGCTGCTGAATTTTTATCTTTGCAGACCACAACACGACAAAACTCATCTGTACTCATATGACGAAGACATTGATCCAACTCTTCTGGCACAGTTAACGGGGGATCGCCGACGCAATATGTCACCTCCACATCCTCTGTTGAATCCGTCAGATTGCGGAAG ACAATTGTGGC CTCGGC ACCAGCAACAG G ATTGTAGATA TCCTTCC CT TTCCTAATAATTGATTTGCGAATACTTCCATCCTTGT TTCTGCTGACAT CAGAGCCCAAGGTT TCGAAAAGCTCCACCTCAAATTTTAGAGTTTTCCCATCTTTGTAAGCATAATCAGGAGACGCAATTAGTTCACAAATTTCTCCCAACTTCATTGTAGCGACACCGACATCCCAAGCCTTTATTACACTGCCATTTCCAATAGTAAATTCAAACTTCTCATTTCGAGCCCTACTTGAGTCAAAGACCTCACCGTG ] [-] EMBL CD157829 [ CATCTGTACTCATATGACGAAGACATTGATCCAACTCTTCTGGCACAGTTAACGGGGGATCGCCGACGCAATATGTCACCTCCACATCCTCTGTTGAATCCGTCAGATTGCGGAAG ACAATTGTGGC CTCGGC ACCAGCAACAG G ATTGTAGATA TCCTTCC CT TTCCTAATAAGTGATTTGAGAATACTTCCATCATTGT TTATGCTGACAT CAGAGCCCAAGGTT TCGAAAAGCTCCACCTCAAATTTTAGAG ] [+] EMBL CD188786 [ CGGGGGATCGCCGACGCAATATGTCACCTCCACATCCTCTGTTGAATCCGTCAGATTGCGGAAG ACAATTGTGGC CTCGGC ACCAGCAACAG G ATTGTAGATA TCCTTCC CT TTCCTAATAATTGATTTGCGAATACTTCCATCCTTGT TTCTGCTGACAT CAGAGCCCAAGGTT TCGAAAAGCTCCGCCTCAAATTTTAGAGTTTTCCCATCTTTGTAAGCATAATCAGGAGACGCAATTAGTTCACAAATTTCTCCCAACTTCATTGTAGCGACACCGACATCCCAAGCCTTTATTACACTGCCATTTCCAATAGTAAATTCAAACTTCTCATTTCGAGCCCTACTTGAGTCAAAGACCTCACC ] [+] EMBL CD133661 [ CGGGGGATCGCCGACGCAATATGTCACCTCCACATCCTCTGTTGAATCCGTCAGATTGCGGAAG ACAATTGTGGC CTCGGC ACCAGCAACAG G ATTGGAGGGG TCCTTCC CT TTCCTAATAATTGATTTGCGAATACTTCCATCCTTGT TTCTGCTGACAT CAGAGCCCAAGGTT TCGAAAAGCTCCACCTCAAATTGTAGAGTTT ] [-] EMBL CD113083 [ GGGATCGCCGACGCAATATGTCACCTCCACATCCTCTGTTGAATCCGTCAGATTGCGGAAG ACAATTGTGGC CTCGGC ACCAGCAACGG G ATTGTAGATA TCCTTCC CT TTCCTAATAATTGATTTGCGAATACTTCCATCCTTGT TTCTGCTGACAT CAGAGCCCAAGGTT TCGAAAAGCTCCACCTCAAATTTTAGAGTTTTCCCATCTTTGT AGCATAATCAGGAGACGCAATTAGTTCACAAATTTCTCCCAACTTCATTGTAGCGACACCGACATCCCTAGCCT ] [+] EMBL CD113681 [ GATCGCCGACGCAATATGTCACCTCCACATCCTCTGTTGAATCCGTCAGATTGCGGAAGAACAATTGTGGCGCTCGGCTTCTTTCAACAGNGAATTGTAAATATTCCTGCC CTGTTCCTAATAATTGATTTGCGAATACTTCCATCCTTGT TTCTAAAAACATACAAAGCCCAAGGTT TCGAAAAGCTCCGCCTCAAATTTTAGAGTTTTCCCATCTTTGTAAGCATAATCAGGATACGCAATTAGTTCACAAATTTCTCCCAACTTCATTGTAGCGACACCGACATCCCAAGCCTTTATTACACTGCCATTTCCAATAGTAAATTCAAACTTCTCATTTCGAGCCCTACTTGAGTCAAAGACCTCACCGTGTTTTTCTCCACCATAGTTGGTTCCAACATAATGTACAATCACAGTGTCGCCATCACATGGCTTGACGTCAGAATAGCCCTCTCGC ATACTTTTTTGAGGATGCCACGATCACCAGATGGGC TTAAA TCCATGAAATCCTT TAGATATTCATCTTCGACCCGTTGCTNGGCTTCAGACTCCTGACCATCATTATCAGCCATTCCGCTGACGCTTTCA] [-] EMBL CD198100 [ CTCCACATCCTCTGTTGAATCCGTCAGATTGCGGAAG ACAATTGTGGC CTCGGC ACCAGCAACAG G ATTGTAGATA TCCTTCC CT TTCCTAATAATTGATTTGCGAATACTTCCATCCTTGT TTCTGCTGACAT CAGAGCCCAAGGTT TCGAAAAGCTCCACCTCAAATTTTAGAGTTTTCCCATCTTTGTAAGCATAATCAGGAGACGCAATTAGTTCACAAATTTCTCCCAACTTCATTGTAGCGACACCGACATCCCAAGCCTTTATTACACTGCCATTTCCAATAGTAAATTCAAACTTCTCATTTCGAGCCCTACTTGAGTCAAAGACCTCACCGTGTTTTTCTCCACCATAGTTGGTTCCAACATAATGTACAATCACAGTGTCGCCATCACATGGCTTGACGTCAGAATAGCCCTCTCGCAATACTTTTTTGAGGATGCCACGATCACCAGATGGGC TTAAA TCCATGAAATCCTT TAGATATTCATCTTCGA ] [+] EMBL CD179230 [ tccccacctCANCAACAG G ATTGTAGATA TCCTTCC CT TTCCTAATAATTGATTTGCGAATACTTCCATCCTTGT TTCTGCTGACAT CAGAGCCCAAGGTTCTC AAAAGCTCCACCTCAAATTTTACAGTTTTCCCATC ] [+] EMBL CD190968 [ CAACAG G ATTGTAGATA TCCTTCC CT TTCCTAAGAACTGATTTGCGAATACTTCCATCCTTGT TTCTGCTGACAT CAGAGCCCAAGGTT TCGAAAAGCTCCACCTCTTACTTTAGAGTTTTCCCATCTTTGTAAGCATAATCAGGAGACGCAATTAGTTCACAAGTTTCTCCCAACTTCATTGTAGCGACACCGACATCCCAAGCCTTTATTACGCTGCCATTCCCAATAGTAAACTCAAATTTCTCATTTCGAGCCCTACTTGAGTCAAAGACCTCACCGTGTTTTTCCCCACCATAGTTGGTCCCGACATAATGTACAATCACAGTGTCGCCATCACATGGCTTGACGTCAGAATAGCCTTCTCGCAATAC ] [-] EMBL CD068977 [ G G ATTGTAGATA TCCTTCC CT TTCCTAATAATTGATTTGCGAATACTTCCATCCTTGT TTCTGCTGACAT CAGAGCCCAAGGTT TCGAAAAGCTCCACCTCAAATTTTAGAGTTTTCCCATCTTTGTAAGCATAATCAGGAGACGCAATTAGTTCACAAATTTCTCCCAACTTCATTGTAGCGACACCGACATCCCAAGCCTTTATTACACTGCCATTTCCAATAGTAAATTCAAACTTCTCATTTCGAGCCCTACTTGAGTCAAAGACCTCACCGTGTTTTTCTCCACCATAGTTGGTTCCAACATAATGTACAATCACAGTGTCGCCATCACATGGCTTGACGTCAGAATAGCCCTCTCGCAATACTTTTTTGAGGATGCCACGATCACCAGATGGGC TTAAACTCCATG AATCCTTGTAGATATTCATCTT ] [+] EMBL CD064599 [ cttggtCTTCCTCT TT CTAATAATTGATTTGCGAATACTTCCATCCTTGTATGCTGCTGACAT CAGAGCCCAAGGTT TCGAAAAGCTCCACCTCAAATTTTAGAGTTTTCCCATCTTTGTAAGCATAATCAGGAGACGCAATTAGTTCACAAATTTCTCCCAACTTCATTGTAGCGACACCGACATCCCAAGCCTTTATTACACTGCCATTTCCAATAGTAAATTCAAACTTCTCATTTCGAGCCCTACTTGAGTCAAAGACCTCACCGTGTTTTTCTCCACCATAGTTGGTTCCAACATAATGTACAATCAC ] [-] EMBL CD110961 [ CGAATACTTCCATCCTTGT TTCTGCTGACAT CAGAGCCCAAGGTT TCGAAAAGCTCCACCTCAAACTTTAGAGTTTTCCCATCTTTGTAAGCATAATCAGGAGACGCATTTAGTTCACAAGTTTCTCCCAACTTCATTGTAGCGACACCGACATCCCAAGCCTTTATTACGCTGCCATTCCCAATAGTAAACTCAAATTTCTCATTTCGAGCCCTACTTGAGTCAAAGACCTCACCGTGTTCTTCCCCACCATAGTTGGTCCCGACATAATGTACAATCACAGTGTCGCCATCACATGGCTCGACGTCAGAATAGCCTTCTCGCAATACTTTTGTGAGGATGCCACGATCTCCAGATGGGCATTAAA TCTATGAAATCCTT TAGATGTTC ] [-] EMBL CD112924 [ CCATCTTTGTAAGCATAATCAGGAGACGCAATTAGTTCACAAATTTCTCCCAACTTCATTGTAGCGTCACCGACATCCCAAGCCTTTATTACA CATTTCCAATAGTAAATTCAAACTTCTCATTTCGAGCCCTACTTGAGTCAAAGACCTCCCCGTGTTTTTCTCCACCATAGTTGGTTCCAACATAATGTACAATCACAGTGTCGCCATCACATGGCTTGACGTCAGAATAGCCCTCTCGCAATACT ] [-] EMBL CD192645 [ GCCTTTATTACGCTGCCATTCCCAATAGTAAACTCAAATTTCTCATTTCGAGCCCTACTTGAGTCAAAGACCTCACCGTGTTTTTCCCCACCATAGTTGGTCCCGACATAATGTACAATCACAGTGTCGgt ] [+] EMBL CD192061 [ TTATTACGCTGCCATTCCCAATAGTAAACTCAAATTTCTCATTTCGAGCCCTACTTGAGTCAAAGACCTCACCGTGTTTTTCCCCACCATAGTTGGTCCCGACATAATGTACAATCACAGTGTCGg ] [-] EMBL CD192733 [ ATTACGCTGCCATTCCCAATAGTAAACTCAAATTTCTCATTTCGAGCCCTACTTGAGTCAAAGACCTCACCGTGTTTTTCCCCACCATAGTTGGTCCCGACATAATGTACAATCACAGTGTCGgt ] [-] EMBL CD192187 [ ATTACGCTGCCATTCCCAATAGTAAACTCAAATTTCTCATTTCGAGCCCTACTTGAGTCAAAGACCTCACCGTGTTTTTCCCCACCATAGTTGGTCCCGACATAATGTACAATCACAGTGTCGgt ] [-] EMBL CD192460 [ ATTACGCTGCCATTCCCAATAGTAAACTCAAATTTCTCATTTCGAGCCCTACTTGAGTCAAAGACCTCACCGTGTTTTTCCCCACCATAGTTGGTCCCGACATAATGTACAATCACAGTGTCGgt ] [+] EMBL CD147814 [ CCAATAGTAAATTCAAACTTCTCATTTCGAGCCCTACTTGAGTCAAAGACCTCACCGTGTTTTTCTCCACCATAGTTGGTTCCAACATAATGTACAATCACAGTGTCGCCATCACATGGCTTGACGTCAGAATAGCCCTCTCGCAATACTTTTTTGAGGATGCCACGATCACCAGATGGGC TTAAA TCCATGAAATCCTT TAGATATTCATCTTC ] consensusID : consensus_11171#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 274 fasta sequence [CATCTGTACTCATATGACGAAGACATTGATCCAACTCTTCTGGCACAGTTAGCGGGGGATCGCCGACGCAATATGTCACCTCCACATCCTCTGTTGAATCCGTCAGATTGCGGAAGACAATTGTGGCCTCGGCACCAGCAACAGAATTGTAGATATCCTTCCCTTTCCTAATAATTGATTTGCGAATACTTCCATCCTTGTTTCTGCTGACATCAGAGCCCAAGGTTTCGAAAAGCTCCACCTCAAATTTTAGAGTTTTCNCCCGCGAAGTGGG] [-] EMBL CD157834 [CATCTGTACTCATATGACGAAGACATTGATCCAACTCTTCTGGCACAGTTAGCGGGGGATCGCCGACGCAATATGTCACCTCCACATCCTCTGTTGAATCCGTCAGATTGCGGAAGACAATTGTGGCCTCGGCACCAGCAACAGAATTGTAGATATCCTTCCCTTTCCTAATAATTGATTTGCGAATACTTCCATCCTTGTTTCTGCTGACATCAGAGCCCAAGGTTTCGAAAAGCTCCACCTCAAATTTTAGAGTTTTCNCCCGCGAAGTGGG] consensusID : consensus_11171#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 141 fasta sequence [CTCACAATACATTCGGAACCTTTTCTTTGCCATATCTTTGGCCTTTTGAATCTCTTCTTCGCACATATGCAACAGCTTTACAGCAGATGCATTGTTTGGATTGTTTGCTACAATCTTCTTGAAATAAACCGACGCCTCATC] [+] EMBL CD166631 [CTCACAATACATTCGGAACCTTTTCTTTGCCATATCTTTGGCCTTTTGAATCTCTTCTTCGCACATATGCAACAGCTTTACAGCAGATGCATTGTTTGGATTGTTTGCTACAATCTTCTTGAAATAAACCGACGCCTCATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11171#0 ATTTATTCACAACTTTGAAACCGGTAACAATTATAAAGGAACATTTACAAAATCACGGGC 60
consensus_11171#1 ------------------------------------------------------------
consensus_11171#2 ------------------------------------------------------------
consensus_11171#0 CGCTCATTTAGATTAAATCTAGGAGCAAACTCTTACAATGCAGATTTTTCGCCATTTAAT 120
consensus_11171#1 ------------------------------------------------------------
consensus_11171#2 ------------------------------------------------------------
consensus_11171#0 GCAACCCCGTCTTTATGCTCTTCAACACCATCCAGTCCAGAGTCTTTACAGCGCTCAAAA 180
consensus_11171#1 ------------------------------------------------------------
consensus_11171#2 ------------------------------------------------------------
consensus_11171#0 ATACTTCGGAACCTTTTCTTTGCCATATCTTTGGCCTTTTGAATCTCTTCTTCACACATA 240
consensus_11171#1 ------------------------------------------------------------
consensus_11171#2 ------------------------------------------------------------
consensus_11171#0 TGCAGCAGCTTTACAGCCGATGCATTGTTGGGATTCTTTGCTACAATCTTCTTGAAATAA 300
consensus_11171#1 ------------------------------------------------------------
consensus_11171#2 ------------------------------------------------------------
consensus_11171#0 ACCAATGCCTCATCGTGGTCGTTACGCAGTAGATGCGCCTGACCCATCCTGAATAACGCC 360
consensus_11171#1 ------------------------------------------------------------
consensus_11171#2 ------------------------------------------------------------
consensus_11171#0 TTTTCGTTGTTACCAAAAACGTCCAACACCTTCCGGCAGAACTCAATACATTTATCTGGT 420
consensus_11171#1 ------------------------------------------------------------
consensus_11171#2 ------------------------------------------------------------
consensus_11171#0 TTACATAGCTTCAGGTAAGTCAAACCTAAATTAAGTCGGACGGCTACAATAACTGCGGAT 480
consensus_11171#1 ------------------------------------------------------------
consensus_11171#2 ------------------------------------------------------------
consensus_11171#0 AATTCCTTTTGCTCTGCAGGGCCATTAGCCACAATGTACTGCAACTCATCATCTAAACGT 540
consensus_11171#1 ------------------------------------------------------------
consensus_11171#2 ------------------------------------------------------------
consensus_11171#0 TTGTACAATTCAATAGCAGAATCAAATTTAGAATCCTTTAGAAAGTTGTTCGCTTTTTCT 600
consensus_11171#1 ------------------------------------------------------------
consensus_11171#2 ------------------------------------------------------------
consensus_11171#0 TTCAGTACATTTGCATACGCCATCTGCTCTGAAAATGGTGAGATACCAGATAGATGTTTA 660
consensus_11171#1 ------------------------------------------------------------
consensus_11171#2 ------------------------------------------------------------
consensus_11171#0 GTCTTCTCAAAAGACTTGAGCGTTAATTCATAAACCACCCGACTTTTGTCTGCAACTTCA 720
consensus_11171#1 ------------------------------------------------------------
consensus_11171#2 ------------------------------------------------------------
consensus_11171#0 GCTGCTGAATTTTTATCTTTGCAGACCACAACACGACAAAACTCATCTGTACTCATATGA 780
consensus_11171#1 -------------------------------------------CATCTGTACTCATATGA 17
consensus_11171#2 ------------------------------------------------------------
consensus_11171#0 CGAAGACATTGATCCAACTCTTCTGGCACAGTTAACGGGGGATCGCCGACGCAATATGTC 840
consensus_11171#1 CGAAGACATTGATCCAACTCTTCTGGCACAGTTAGCGGGGGATCGCCGACGCAATATGTC 77
consensus_11171#2 -----------------------------------------------CTCACAATACATT 13
* ***** *
consensus_11171#0 ACCTCCACATCCTCTGTTGAATCCGTCAGATTGCGGAAGACAATTGTGGCCTCGGCACCA 900
consensus_11171#1 ACCTCCACATCCTCTGTTGAATCCGTCAGATTGCGGAAGACAATTGTGGCCTCGGCACCA 137
consensus_11171#2 CGGAACCTTTTCTTTGCCATATCT-TTGGCCTTTTGAATCTCTTCTTCGC----ACATAT 68
* * ** ** *** * * * *** * * ** **
consensus_11171#0 GCAACAGGATTGTAG-ATATCCTTCCCTTTCCTAATAATTGATTTGCGAATACTTCCATC 959
consensus_11171#1 GCAACAGAATTGTAG-ATATCCTTCCCTTTCCTAATAATTGATTTGCGAATACTTCCATC 196
consensus_11171#2 GCAACAGCTTTACAGCAGATGCATTGTTTG------GATTG-TTTGC---TACAATCTTC 118
******* ** ** * ** * * ** **** ***** *** * **
consensus_11171#0 CTTGTTTCTGCTGACATCAGAGCCCAAGGTTTCGAAAAGCTCCACCTCAAATTTTAGAGT 1019
consensus_11171#1 CTTGTTTCTGCTGACATCAGAGCCCAAGGTTTCGAAAAGCTCCACCTCAAATTTTAGAGT 256
consensus_11171#2 TTGAAATAAACCGACGCCTCATC------------------------------------- 141
* * * *** * * *
consensus_11171#0 TTTCCCAT-CTTTGTAAGCATAATCAGGAGACGCAATTAGTTCACAAATTTCTCCCAACT 1078
consensus_11171#1 TTTCNCCCGCGAAGTGGG------------------------------------------ 274
consensus_11171#2 ------------------------------------------------------------
consensus_11171#0 TCATTGTAGCGACACCGACATCCCAAGCCTTTATTACACTGCCATTTCCAATAGTAAATT 1138
consensus_11171#1 ------------------------------------------------------------
consensus_11171#2 ------------------------------------------------------------
consensus_11171#0 CAAACTTCTCATTTCGAGCCCTACTTGAGTCAAAGACCTCACCGTGTTTTTCTCCACCAT 1198
consensus_11171#1 ------------------------------------------------------------
consensus_11171#2 ------------------------------------------------------------
consensus_11171#0 AGTTGGTTCCAACATAATGTACAATCACAGTGTCGCCATCACATGGCTTGACGTCAGAAT 1258
consensus_11171#1 ------------------------------------------------------------
consensus_11171#2 ------------------------------------------------------------
consensus_11171#0 AGCCCTCTCGCAATACTTTTTTGAGGATGCCACGATCACCAGATGGGCTTAAATCCATGA 1318
consensus_11171#1 ------------------------------------------------------------
consensus_11171#2 ------------------------------------------------------------
consensus_11171#0 AATCCTTTAGATATTCATCTTCGACCCGTTGCTGGGCTCCAGACTCCTGACCATCATTAT 1378
consensus_11171#1 ------------------------------------------------------------
consensus_11171#2 ------------------------------------------------------------
consensus_11171#0 CAGCCATTCCGCTGACGCTTTCA 1401
consensus_11171#1 -----------------------
consensus_11171#2 -----------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||