These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11173#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 28 consensus length = 1172 fasta sequence [CCTGGAATACCTTGACGGCGTGATTGTTCAGTCCGCGTGACACCAGAAATGAAGAAACACAAAGTTAGAGCTGGTAATGTGGGAGCTATTCAGGCAGCTGAGTCCTTTGCGGTAATTTCAGAGGACAAGAAACCTACTTTAGATTGCAGCCAATGGCCATTATTGTTGAAAAATGTTCATCTTATGAA-TGTACGCGAGTGTCATTTCGAGGCTGACACAACAGGCTACTCACCTTTACACAGACCTCTGGATGAATACATCAAGAGTGGAGTCATCAACCTCGACAAGCCATGCAACCCATCATCTCATGAAGTTGTTGCGTGGGTGAAAAGAGCCCTTGGAGTCAACAAAACCGGTCATAGTGGCACTTTAGACCCCAAAGTTTCTGGTTGTCTTATTGTCTGTATCGATCGTGCTACTAGGCTTGTAAAGTCTCAGCAAAGTGCTGGTAAAGAGTATGTATGCATATTTAGACTTCACGAGTCCGTGGATGAGATCAAAAAGATACAAAAAGCTGTAGAAGGGCTGACTGGAGCATTATTCCAGAGACCCCCGCTAGTTGCTGCTGTTAAGCGCCAGCTCAGAGTTCGTACAATATACGAGTGTAAACTTTTGGAGTATG-AAAAAAGTAAAAATTTGGGGCTAATAATGGTGCGCTGTGAGGCTGGAACGTATGTTCGGACGCTTTGTGTGCATTTGGGTTTGCTTTTAGGTTGTGGAGGTGTTATGGAGGAACTTAGGCGGTCTAAAACTGGTTTTATGTCTGAAAGGGACAATCTGGTTACTATGCATGATATACTAGATGCTAAGTGGCTTTATGACAATAGGCGAGATGAGACTTACTTGCGTCGTGTTATTATGCCTCTCGAAAAGCTGCTGATCAAACACAAACGGATTATGCTTAAAGATACTGCCGTGTGCGCTATTTGCTTCGGTGCGAAACTTATGTTGCCTGGCGTACTCCGTTACGACAACGACATCAATGTCAACGATGAAATAGTCCTAATGACTACCAAAGGCGAAGCCGTAGCTCTTGCTGTTGCACTAATGACTACTGCAACAATCGCGACGTGTGACCATGTATTAGTCGCAAAACTGAAAAGAGTGATAATGGAGCGTGATCTCTATCCTCGCCAGTGGGGTCGTGGTCCTGTTTCCATGGAAAGGAAAAA] [+] EMBL CD159412 [CCTGGAATACCTTGACGGCGTGATTGCTCATTCCACGGGACACCATAAATGGAGAAACACAAAGATAGAGCTGGTAATGCGGGAGCTATTCAGGCAGCTGAGTCCTTTGCGGTAATTTCAGAGGACAAGAACACTACTTTAGATTGCACCCTTTGGCCATTATTGTTGAAAAATGTTCATCTTATGAACTGTACTCGAGTGGCATTTCGAGGCTGACACAACAGGCTACTCACCTTTACACAGACCTCTGGATGAATACATTAAGAGGGGAGTCATCA ] [-] EMBL CD199456 [ ACCTTGACGGCGTGATTGTTCAGTCCGCGTGACNCCAGAAATGAAGAAACACAAAGTTAGAGCTGGTAATGTGGGAGCTATTCAGGCAGCTGAGTCCTTTGCGGTAATTTCAGAGGACAAGAAACCTACTTTAGATTGCAGCCAATGGCCATTATTGTTGAAAAATGTTCATCTTATGAA TGTACGCGAGTGTCATTTCGAGGCTGACACAACAGGCTACTCACCTTTACACAGATCTCTGGATGAATACATCAAGAGTGGAGTCATCAACCTC ] [-] EMBL CD199394 [ gACCTTGACGGCGTGATCGTTCAGTCCGCGTGACACCAGAAATGAAGAAACACAAAGTTAGAGCTGGTAATGTGGGAGCTATTCAGGCAGCTGAGTCCTTTGCGGTAATTTCAGAGGACAAGAAACCTACTNTAGATTGCAGCCAATGGCCATTATTGTTGAAAAATGTTCATCTTATGAA TGTACGCGAGTGTCATTTCGAGGCTGACACAACAGGCTACTCACCTTTACACAGACCTCTGGATGAATACATCAAGAGTGGAGTCATCAACCTC ] [-] EMBL CD199420 [ ACCTTGACGGCGTGATTGTTCAGTCCGCGTGACNCCAGAAATGAAGAAACACAAAGTTAGAGCTGGTAATGTGGGAGCTACTCAGGCAGCTGAGTCCTTTGCGGTAATTTCAGAGGACAAGAAACCTACTTTAGATTGCAGCCAATGGCCATTATTGTTGAAAAATGTTCATCTTATGAA TGTACGCGAGTGTCATTTCGAGGCTGACACAACAGGCTACTCACCTTTACACAGACCTCTGGATGAATACATCAAGAGTGGAGTCATCAACCTC ] [+] EMBL CD185873 [ AGTCCGCGTGACACCAGAAATGAAGAAACACAAAGTTAGAGCTGGTAATGTGGGAGCTATTCAGGCAGCTGAGTCCTTTGCGGTAATTTCAGAGGACAAGAAACCTACTTTAGATTGCAGCCAATGGCCATTATTGTTGAAAAATGTTCATCTTATGAA TGTACGCGAGTGTCATTTCGAGGCTGACACAACAGGCTACTCACCTTTACACAGACCTCTGGATGAATACATCAAGAGTGGAGTCATCAACCTCGACAAGCCATGCAACCCATCATCTCATGAAGTTGTTGCGTGGGTGAAAAGAGCCCTTGGAGTCAACAAAACCGGTCATAGTGGCACTTTAGACCCCAAAGTTTCTGGTTGTCTTATTGTCTGTATCGATCGTGCTACTAGGCTTGTAAAGTCTCAGCAAAGTGCTGGTAAAGAGTATGTATGCATATTTAGACTTCGCGAGTCCGTGGATGAGATCAAAAAGATACAAAAAGCTGTAGAAGGGCTGACTGGAGCATTATTCCAGAGACCCCCGCTAGTTGCTGCTGT ] [+] EMBL CD138208 [ AGAAACACAAAGTTAGAGCTGGTAATGTGGGAGCTATTCAGGCAGCTGAGTCCTTTGCGGTAATTTCAGAGGACAAGAAACCTACTTTAGATTGCAGCCAATGGCCATTATTGTTGAAAAATGTTCATCTTATGAA TGTACGCGAGTGTCATTTCGAGGCTGACACAACAGGCTACTCACCTTTACACAGACCTCTGGATGAATACATCAAGAGTGGAGTCATCAACCTCGACAAGCCATGCAACCCATCATCTCATGAAGTTGTTGCGTGGGTGAAAAGAGCCCTTGGAGTCAACAAAACCGGTCATAGTGGCACTTTAGACCCCAAAGTTTCTGGTTGTCTTATTGTCTGTATCGATCGTGCTACTA ] [+] EMBL CD153655 [ ACAACAGGCTACTCACCTTTACACAGACCTCTGGATGAATACATCAAGAGTGGAGTCATCAACCTCGACAAGCCATGCAACCCATCATCTCATGAAGTTGTTGCGTGGGTGAAAAGAGCCCTTGGAGTCAACAAAACCGGTCATAGTGGCACTTTAGACCCCAAAGTTTCTGGTTGTCCTATTGTCTGTATCGATCGTGCTACTAGGCTTGTAAAGTCTCAGCAAAGTGCTGGTAAAGAGTATGTATGCATATTTAGACTTCACGAGTCCGTGGATGAGATCAAAAAGATACAAAAAGCTGTAGAAGGGCTGACTGGAGCATTATTCCAGAGACCCCCGCTAGTTGCTGCTGTTAAGCGCCAGCTCGGAGTTCGTACAATATACGAGTGTAAACTTTTGGAGTATG AAAAAAGTAAAAATTTGGGGCTAATAATGGTGCGCTGTGAGGCTGGAACGTATGTTCGGACGCTTTGTGTGCATTTGGGTTTGCTTTTAAGTTGTGGAGG ] [+] EMBL CD156679 [ TGAATACATCAAGAGTGGAGTCATCAACCTCGACAAGCCATGCAACCCATCATCTCATGAAGTTGTTGCGTGGGTGAAAAGAGCCCTTGGAGTCAACAAAACCGGTCATAGTGGCACTTTAGACCCCAAAGTTTCTGGTTGTCTTATTGTCTGTATCGATCGTGCTACTAGGCTTGTAAAGTCTCAGCAAAGTGCTGGTAAAGAGTATGTATGCATATTTAGACTTCACGAGTCCGTGGATGAGATCAAAAAGATACAAAAAGCTGTAGAAGGGCTGACTGGAGCATTATTCCAGAGACCCCCGCTAGTTGCTGCTGTTAAGCGCCAGCTCAGAGCTCGTACAATATACGAGTGTAAACTTTTGGAGTATG AAAAAAGTAAAAATTTGGGGCTAATAATGGTGCGCTGT ] [-] EMBL CD156592 [ GAATACATCAAGAGTGGAGTCATCAACCTCGACAAGCCATGCAACCCATCATCTCATGAAGTTGTTGCGTGGGTGAAAAGAGCCCTTGGAGTCAACAAAACCGGTCATAGTGGCACTTTAGACCCCAAAGTTTCTGGTTGTCTTATTGTCTGTATCGATCGTGCTACTAGGCTTGTAAAGTCTCAGCAAAGTGCTGGTAAAGAGTATGTATGCATATTTAGACTTCACGAGTCCGTGGATGAGATCAAAAAGATACAAAAAGCTGTAGAAGGGCTGACTGGAGCATTATTCCAGAGACCCCCGCTAGTTGCTGCTGTTAAGCGCCAGCTCAGAGTTCGTACAATATACGAGTGTAAACTTTTGGAGTATG AAAAAAGTAAAAATTTGGGGCTAATAATGGTGCGCTGTG ] [+] EMBL CD144268 [ ACATCAAGAGTGGAGTCATCAACCTCGACAAGCCATGCAACCCATCATCTCATGAAGTTGTTGCGTGGGTGAAAAGAGCCCTTGGAGTCAACAAAACCGGTCATAGTGGCACTTTAGACCCCAAAGTTTCTGGTTGTCTTATTGTCTGTATCGATCGTGCTACTAGGCTTGTAAAGTCTCAGCAAAGTGCTGGTAAAGAGTATGTATGCATATTTAGACTTCACGAGTCCGTGGATGAGATCAAAAAGATACAAAAAGCTGTAGAAGGGCTGACTGGAGCATTATTCCAGAGACCCCCGCTAGTTGCTGCTGTTAAGCGCCAGCTCAGAGTTCGTACAATATACGAGTGTAAACTTTTGGAGTATG AAAAAGGTAAAAATTTGGGGCTAATAATGGTGCGCTGTGAGGCTGGAACGTATGTTCNGACGCTNTGTGTGCATTTGGGTTTGCTT ] [+] EMBL CD164637 [ acacgagacCATCAAGAGTGGAGTCATCAACCTCGACAAGCCATGCAACCCATCATCTCATGAAGTTGTTGCGTGGGTGAAAAGAGCCCTTGGAGTCAACAAAACCGGTCATAGTAGCACTTTAGACCCCAAAGTTTCTGGTTGTCTTATTGTCTGTATCGATCGTGCTACTAGGCTTGTAAAGTCTCAGCAAAGTGCTGGTAAAGAGTATGTATGCATATTTA ] [+] EMBL CD148778 [ GGAGTCATCAACCTCGACAAGCCATGCAACCCATCATCTCATGAAGTTGTTGCGTGGGTGAAAAGAGCCCTTGGAGTCAACAAAACCGGTCATAGTGGCACTTTAGACCCCAAAGTTTCTGGTTGTCTTATTGTCTGTATCGATCGTGCTACTAGGCTTGTAAAGTCTCAGCAAAGTGCTGGTAAAGAGTATGTATGCATATTTAGACTTCACGAGTCCGTGGATGAGATCAAAAAGATACAAAAAGCTGTAGAAGGGCTGACTGGAGCATTATT ] [+] EMBL CD187883 [ CTCGACAAGCCATGCAACCCATCATCTCATGAAGTTGTTGCGTGGGTGAAAAGAGCCCTTGGAGTCAACAAAACCGGTCATAGTGGCACTTTAGACCCCAAAGTTTCTGGTTGTCTTATTGTCTGTATCGATCGTGCTACTAGGCTTGTAAAGTCTCAGCAAAGTGCTGGTAAAGAGTATGTATGCATATTTAGACTTCACGAGTCCGTGGATGAGATCAAAAAGATACAAAAAGCTGTAGAAGGGCTGACTGGAGCATTATTCCAGAGACCCCCGCTAATTGCTGCTGTTAAGCGCCAGCTCAGAGTTCGTACAATATACGAGTGTAAACTTTTGGAGTATGAAAAAAAGTAAAAATTTGGGGCTAATAATGGTGCGCTGTGAGGCTGGAACGTATGTTCGGACGCTTTGTGTGCATTTGGGTTTGCTTTTAGGTTGTGG ] [-] EMBL CD157422 [ CATGCAACCCATCATCTCATGAAGTTGTTGCGTGGGTGAAAAGAGCCCTTGGAGTCAACAAAACCGGTCATAGTGGCACTTTAGACCCCAAAGTTTCTGGTTGTCTTATTGTCTGTATCGATCGTGCTACTAGGCTTGTAAAGTCTCAGCAAAGTGCTGGTAAAGAGTATGTATGCATATTTAGACTTCACGAGTCCGTGGATGAGATCAAAAAGATACAAAAAACTGTAGAAGGGCTGACTGGAGCATTATTCCAGAGACCCCCGCTAGTTACTGCTGTTAAGCGCCAGCTCAGAGTTCGTACAATATACGAGTGTAAACTTTTGGAGTATG AAAAAAGTAAAAATTTGGGGCTAATAATGGTGCGCTGTGAGGCTGGAACGTATGTTCGGACGCTTTGTGTGCATTTGGGTTTGCTTTTAGGTTGTGGAGGTGTTAT ] [+] EMBL CD123704 [ GTTGCGTGGGTGAAAAGAGCCCTTGGAGTCAACAAAACCGGTCATAGTGGCACTTTAGACCCCAAAGTTTCTGGTTGTCTTATTGTCTGTATCGATCGTGCTACTAGGCTTGTAAAGTCTCAGCAAAGTGCTGGTAAAGAGTATGTATGCATATTTAGACTTCACGAGTCCGTGGATGAGATCAAAAAGATACAAAAAGCTGTAGAAGGGCTGACTGGAGCATTATTCCAGAGACCCCCGCTAGTTGCTGC ] [-] EMBL CD194048 [ GGGTGAAAAGAGCCTTTGGAGTCAACAAAACCGGTCATAGTGGCACTTTAGACCCCAAAGTTTCTGGTTGTCTTATTGTCTGTATCGATCGTGCTACTAGGCTTGTAAAGTCTCAGCAAAGTGCTGGTAAAGAGTATGTATGCATATTTAGACTTCACGAGTCCGTGGATGAGATCAAAAAGATACAAAAAGCTGTAGAAGGGCTGACTGGAGCATTATTCCAGAGACCCCCGCTAGTTGCTGCTGTTAAGCGCCAGCTCAGAGTTCGTACAATATACGAGTGTAAACTTTTGGAGTATG AAAAAAGTAAAAATTTGGGGCTAATAATGGTGCGCTGTG ] [+] EMBL CD090634 [ GTGAAAAGAGCCCTTGGAGTCAACAAAACCGGTCATAGTGGCACTTTAGACCCCAAAGTTTCTGGTTGTCTTATTGTCTGTATCGATCGTGCTACTAGGCTTGTAAAGTCTCAGCAAAGTGCTGGTAAAGAGTATGTATGCATATTTAGACTTCATGAGTCCGTGGATGAGATCAAAAAGATACAAAAAGCTGTAGAAGGGCTGACTGGAGCATTATTCCAGAGACCCCCGCTAGTTGCTGCTGTTAAGCGCCAGCTCAGAGTTCGTACAATATACGAGTGTAAACTTTTGGAGTATG AAAAAAGTAAAAATTTGGGGCTAATAATGGTGCGCTGTGAGGCTGGAACGT TGTggaggt ] [+] EMBL CD125702 [ AACCGGTCATAGTGGCACTTTAGACCCCAAAGTTTCTGGTTGTCTTATTGTCTGTATCGATCGTGCTACTAGGCTTGTAAAGTCTCAGCAAAGTGCTGGTAAAGAGTATGTATGCATATTTAGACTTCACGAGTCCGTGGATGAGATC AAAAGAT ] [+] EMBL CD149756 [ GGCACTTTAGACCCCAAAGTTTCTGGTTGTCTTATTGTCTGTATCGATCGTGCTACTAGGCTTGTAAAGTCTCAGCAAAGTGCTGGTAAAGAGTATGTATGCATATTTAGACTTCACGAGTCCGTGGATGAGATCAAAAAGATACAAAAAGCTGTAGAAGGGCTGACTGGAGCATTATTCCAGAGACCCCCGCTAGTTGCTGCTGTTAAGCGCCAGCTCAGAGTTCGTACAATATACGAGTGTAAACTTTTGGAGTATG AAAAAAGTAAAAATTTGGGGCTAATAATGGTGCGCTGTGAGGCTGGAACGTATGTTCGGACGCTTTGTGTGCATTTGGGTTTGCTTTTAAGTTGTGGAGGTGTTATGGAAGAACTTAAGCGGTCTAAAACTGGTTTTATGTCTGAAAGGGACAATCTGGGTACTATGCATGATATACTACATGCTCAGTGGCCTTA ] [+] EMBL CD191271 [ gtaACTAGGCTTGTAAAGTCTCAGCAAAGTGCTGGTAAAGAGGCTGTATGCATATTTAGACTTCACGAGTCCGTGGATGAGATCAAAAAGATACAAAAAGCTGTAGAAGGGCTGACTGGAGCATTATTCCAGAGACCCCCGCTAGTTGCTGCTGTTAAGCGCCAGCTCAGAGTTCGTACAATATACGAGGGTGAACTTTTGGAGTATG AAAAAAGTAA ] [-] EMBL CD200319 [ CTGCTGTTAAGCGCCAGCTCAGAGTTCGTACAATATACGAGTGTAAACTTTTGGAGTATG AAAAAAGTAAAAATTTGGGGCTAATAATGGTGCGCTGTGAGGCTGGAACGTATGTTCGGACGCTTTGTGTGCATTTGGGTT ] [+] EMBL CD159713 [ TGGGGCTAATAATGGTGCGCTGTGAGGCTGGAACGTATGTTCGGACGCTTTGTGTGCATTTGGGTTTGCTTTTAGGTTGTGGAGGTGTTATGGAGGAACTTAGGCGGTCTAAAACTGGTTTTATGTCTGAAAGGGACAATCTGGTTACTATGCATGATATACTAGATGCTAAGTGGCTTTATGACAATAGGCGAGATGAGACTTACTTGCGTCGTGTTATTATGCCTCTCGAAAAGCTGCTGATCAAACACAAACGGATTATGCTTAAAGATACTGCCGTGTGCGCTATTTGCTTCGGTGCGAAACTTATGTTGCCTGGCGTACTCCGTTACGACAACGACATTCATGTCCACGAT ] [+] EMBL CD159698 [ TGGGGCTAATAATGGTGCGCTGTGAGGCTGGAACGTATGTTCGGACGCTTTGTGTGCATTTGGGTTTGCTTTTAGGTTGTGGAGGTGTTATGGAGGAACTTAGGCGGTCTAAAACTGGTTTTATGTCTGAAAGGGACAATCTGGTTACTATGCATGATATACTAGATGCTAAGTGGCTTTATGACAATAGGCGAGATGAGACTTACTTGCGTCGTGTTATTATGCCTCTCGAAAAGCTGCTGATCAAACACAAACGGATTATGCTTAAAGATACTGCCGTGTGCGCTATTTGCTTCGGTGCGAAACTTATGTTGCCTGGCGTACTCCGTTACGACAACGACATCAATGTTCACGATGAAATAGTCCTAATGACTACCANAGGCGAAGCCGTAGCTCTTGCTGTTGCACTTATGACTACTGCGACca ] [+] EMBL AI976858 [ AATAATGGTGCGCTGTGAGGCTGGAACGTATGTTCGGACGCTTTGTGTGCATTTGGGTTTGCTTTTAGGTTGTGGAGGTGTTATGGAGGAACTTAGGCGGTCTAAAACTGGTTTTATGTCTGAAAGGGACAATCTGGTTACTATGCATGATATACTAGATGCTAAGTGGCTTTATGACAATAGGCGAGATGAGACTTACTTGCGTCGTGTTATTATGCCTCTCGAAAAGCTGCTGATCAAACACAAACGGATTATGCTTAAAGATACTGCCGTGTGCGCTATTTGCTTCGGTGCGAAACTTATGTTGCCTGGCGTACTCCGTTACGACAACGACATCAATGTCAACGATGAAATAGTCCTAATGACTACCAAAGGCGAAGCCGTAGCTCTTGCTGTTGCACTAATGACTACTGCAACAATCGCGACGTGTGACCATGTATTAGTCGCAAAACTGAAAAGAGTGATAATGGAGCGTGATCTCTATCCTCGCCAGTGGGGTCGTGGTCCTGTTTC ] [-] EMBL CD123132 [ ATGGAGGAACTTAGGCGGTCTAAAACTGGTTTTATGTCCGAAAGGGACAATCTGGTTACTATGCATGATATACTAGATGCTAAGTGGCTTTATGACAATAGGCGAGATGAGACTTACTTGCGTCGTGTTATTATGCCTCTCGAAAAGCTGCTGATCAAACACAAACGGATTATGCTTAAAGATACTGCCGTGTGCGCTATTTGCTTCGGTGCGAAACTTATGTTGCCTGGCGTACTCCGTTACGACAACGACATCAATGTCAACGATGAAATAGTCCTAATGACTACCAAAGGCGAAGCCGTAGCTCTTGCTGTTGCACTAA ] [+] EMBL CD091026 [ TGGTTACTATGCATGATGTACTAGATGCTAAGTGGCTTTATGACAATAGGCGAGATGAGACTTACTTGCGTCGTGTTATTATGCCTCTCGAAAAGCTGCTGATCAAACACAAACGGATTATGCTTAAAGATACTGCCGTGTGCGCTATTTGCTTCGGTGCGAAGCTTATGTTGCCTGGCGTACTCCGTTACGACAACGACATCAATGTCAACGATGAAATAGTCCTAATGACTACCAAAGGCGAAGCCGTAGCTCTTGCTGTTGCACTAATGACTACTGCAACAA ] [+] EMBL CD091025 [ TGGTTACTATGCATGATATACTAGATGCTAAGTGGCTTTATGACAGTAGGCGAGATGAGACTTACTTGCGTCGTGTTATTATGCCTCTCGAAAAGCTGCTGATCAAACACAAACGGATTATGCTTAAAGATACTGCCGTGTGCGCTATTTGCTTCGGTGCGAAACTTATGTTGCCTGGCGTACTCCGTTACGACAACGACATCAATGTCAACGATGAAATAGTCCTAATGACTACCAAAGGCGAAGCCGTAGCTCTTGCTGTTGCACTAATGACTACTGCAACAA ] [-] EMBL CD147954 [ ATGTCAACGATGAAATAGTCCTAATGACTACCAAAGGCGAAGCCGTAGCTCTTGCTGTTGCACTAATGACTACTGCAACAATCGCGACGTGTGACCATGGATTAGTCGCAAAACTGAAAAGAGTGATAATGGAGCGTGATCTCTATCCTCGCCAGTGGGGTCGTGGTCCTGTTTCCATGGAAAGGAAAAA] consensusID : consensus_11173#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 679 fasta sequence [GGCTTTATGACAATAGGCGAGATGAGACTTACTTGCGTCGTGTTATTATGCCTCTCGAAAAGCTGCTGATCAAATACAAACGGATTATGCTTAAAGATACTGCCGTAAGTTCCTTTACATATAGAAGCATGTGTCGATTAGGTGTGCGCTATTTGCTTCGGTGCGAAACTTATGTTGCCTGGCGTACTCCGTTACGACAACGACATCAATGTCAACGATGAAATAGTCCTAATGACTACCAAAGGCGAAGCCGTAGCTCTTGGTAGGTCATTTCAGACTAACATCAACTTCAAGCTGTTGCACTAATGACTACTGCAACAATCGCGACGTGTGACCATGGATTAGTCGCAAAACTGAAAAGAGTGATAATGGAGCGTGATCTCTATCCTCGCCAGTGGGGTCGTGGTCCTGTTTCCATGGAAAGGAAAAAACTCGTTGCCCAAGGTTTACTTAAAAAGTTTTCCAAATCTGACGGTGTGACGAATACTTCGAACTCTGTTGGATTGAAAACCAAGATGGAAGTAAGTGAAGCTGGGGAGGCTGTAACGTAAGTTCACTACTTTCCTTCGACATCTTTGATAGAAGGCGAATTAAAGCACCAAATCCTTCCGACTCAAGTGACGATGAAATGGCAAGGTAAGTTTAGAATCCAATAGCTGTGATGATCAAGCATATGTCT] [+] EMBL CD084293 [GGCTTTATGACAATAGGCGAGATGAGACTTACTTGCGTCGTGTTATTATGCCTCTCGAAAAGCTGCTGATCAAATACAAACGGATTATGCTTAAAGATACTGCCGTAAGTTCCTTTACATATAGAAGCATGTGTCGATTAGGTGTGCGCTATTTGCTTCGGTGCGAAACTTATGTTGCCTGGCGTACTCCGTTACGACAACGACATCAATGTCAACGATGAAATAGTCCTAATGACTACCAAAGGCGAAGCCGTAGCTCTTGGTAGGTCATTTCAGACTAACATCAACTTCAAGCTGTTGCACTAATGACTACTGCAACAATCGCGACGTGTGACCATGGATTAGTCGCAAAACTGAAAAGAGTGATAATGGAGCGTGATCTCTATCCTCGCCAGTGGGGTCGTGGTCCTGTTTCCATGGAAAGGAAAAAACTCGTTGCCCAAGGTTTACTTAAAAAGTTTTCCAAATCTGACGGTGTGACGAATACTTCGAACTCTGTTGGATTGAAAACCAAGATGGAAGTAAGTGAAGC ] [-] EMBL CD119290 [ CACTAATGACTACTGCAACAATCGCGACGTGTGACCATGGATTAGTCGCAAAACTGAAAAGAGTGATAATGGAGCGTGATCTCTATCCTCGCCAGTGGGGTCGTGGTCCTGTTTCCATGGAAAGGAAAAAACTCGTTGCCCAAGGTTTACTTAAAAAGTTTTCCAAATCTGACGGTGTGACGAATACTTCGAACTCTGTTGGATTGAAAACCAAGATGGAAGTAAGTGAAGCTGGGGAGGCTGTAACGTAAGTTCACTACTTTCCTTCGACATCTTTGATAGAAGGCGAATTAAAGCACCAAATCCTTCCGACTCAAGTGACGATGAAATGGCAAGGTAAGTTTAGAATCCAATAGCTGTGATGATCAAGCATATGTCT] [+] EMBL CD147995 [ AAAACTGAAAAGAGTGATAATGGAGCGTGATCTCTATCCTCGCCAGTGGGGTCGTGGTCCTGTTTCCATGGAAAGGAAAAAACTCGTTGCCCAAGGTTTACTTAAAAAGTTTTCCAAATCTGACGGTGTGACGAATACTTCGAACTCTGTT ] [-] EMBL CD148116 [ AAACTGAAAAGAGTGATAATGGAGCGTGATCTCTATCCTCGCCAGTGGGGTCGTGGTCCTGTTTCCATGGAAAGGAAAAAACTCGTTGCCCAAGGTTTACTTAAAAAGTTTTCCAAATCTGACGGTGTGACGAATACTTCGAACTCTGTTG ] [-] EMBL CD148079 [ AAACTGAAAAGAGTGATAATGGAGCGTGATCTCTATCCTCGCCAGTGGGGTCGTGGTCCTGTTTCCATGGAAAGGAAAAAACTCGTTGCCCAAGGTTTACTTAAAAAGTTTTCCAAATCTGACGGTGTGACGAATACTTCGAACTCTGTTG ] consensusID : consensus_11173#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 469 fasta sequence [AATCTTCTATCCAGTTCGGCAACACTGTTGAAAACTTTTCCTGGTGCCGATAGTAGTGTGATGTCTCTGTAGTTTTCACATTTGCTCAGATCCCCTTTCTTTGATATCTTGGTGAGGTATCCTTGTTTCCAGTCTATCGGCACTTGTTCTTCCTCCCAAATCTTCCTGAATAGAATGTGGGAGCTATTCAGGCAGCTGAGTCCTTTGCGGTAATTTCAGAGGACAAGAAACCTACTTTAGATTGCAGCCAATGGCCATTATTGTTGAAAAATGTTCATCTTATGAATGTACGCGAGTGTCATTTCGAGGCTGACACAACAGGCTACTCACCTTTACACAGACCTCTGGATGAATACATCAAGTTTGTCTGAACCATCTCTGTAACTTTTAAGGAGTGGAGTCATCAACCTCGACAAGCCATGCAACCCATCATCTCATGAAGTTGTTGCGTGGGTGAAAAGAGCCCTTG] [+] EMBL CD184929 [AATCTTCTATCCAGTTCGGCAACACTGTTGAAAACTTTTCCTGGTGCCGATAGTAGTGTGATGTCTCTGTAGTTTTCACATTTGCTCAGATCCCCTTTCTTTGATATCTTGGTGAGGTATCCTTGTTTCCAGTCTATCGGCACTTGTTCTTCCTCCCAAATCTTCCTGAATAGAATGTGGGAGCTATTCAGGCAGCTGAGTCCTTTGCGGTAATTTCAGAGGACAAGAAACCTACTTTAGATTGCAGCCAATGGCCATTATTGTTGAAAAATGTTCATCTTATGAATGTACGCGAGTGTCATTTCGAGGCTGACACAACAGGCTACTCACCTTTACACAGACCTCTGGATGAATACATCAAGTTTGTCTGAACCATCTCTGTAACTTTTAAGGAGTGGAGTCATCAACCTCGACAAGCCATGCAACCCATCATCTCATGAAGTTGTTGCGTGGGTGAAAAGAGCCCTTG] consensusID : consensus_11173#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 299 fasta sequence [CGGCGTGATTGTTCAGTCCGCGTGACACCAGAAATGAAGAAACACAAAGTTAGGGCTGGTAATGTGGGAGCTATTCAGGCAGCTGAGTCCTTTGCGGTAATTTCAGAGGACAAGAAACCTACTTTAGATTGCAGCCAATGGCCATTATTGTTGAAAAATGTTCATCTTATGAATGTGCGCGAGTGTCATTTCGAGGCTGACACAACAGGCTACTCACCTTTACACAGACCTCTGGATGAATACATCAAGTTTGTCTGAACCATCTCTGTAACTTTTAAGGAGTGGAGTCATCAACCTCG] [+] EMBL CD161316 [CGGCGTGATTGTTCAGTCCGCGTGACACCAGAAATGAAGAAACACAAAGTTAGGGCTGGTAATGTGGGAGCTATTCAGGCAGCTGAGTCCTTTGCGGTAATTTCAGAGGACAAGAAACCTACTTTAGATTGCAGCCAATGGCCATTATTGTTGAAAAATGTTCATCTTATGAATGTGCGCGAGTGTCATTTCGAGGCTGACACAACAGGCTACTCACCTTTACACAGACCTCTGGATGAATACATCAAGTTTGTCTGAACCATCTCTGTAACTTTTAAGGAGTGGAGTCATCAACCTCG] [+] EMBL CD159398 [ GATTGTTCAGTCCGCGTGACACCAGAAATGCAGAAACACAAAGTTAGAGCTGGTAATGTGGGAGCTATTCAGGCAGCTGAGTCCTTTGCGGTAATTTCAGAGGACAAGAAACCTACTTTAGATTGCAGCCAATGGCCATTATTGTTGAAAAATGTTCATCTTATGAATGTACGCGAGTGTCATTTCGAGGCTGACACAACAGGCTACTCACCTTTACACAGACCTCTGGATGAATACATCAAGTTTGTCTGAACCATCTCTGTAACTTTTAAGGAGTGGAGTCA ] consensusID : consensus_11173#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 175 fasta sequence [TCGTGGTCCCGTTTCCATGGAAAGGAAAAAACTCGTTGCCCAAGGTTTACTTAAAAAGTTTTCCAAATCTGACGGTGTGACGAATACTTCGAACTCTGTTGGGTAGGTGATCAATGTTTGATAACGCGTACTTCAGATTGAAAACCAAGATGGAAGTAAGTGAAGCCGGGGAGGG] [+] EMBL CD087387 [TCGTGGTCCCGTTTCCATGGAAAGGAAAAAACTCGTTGCCCAAGGTTTACTTAAAAAGTTTTCCAAATCTGACGGTGTGACGAATACTTCGAACTCTGTTGGGTAGGTGATCAATGTTTGATAACGCGTACTTCAGATTGAAAACCAAGATGGAAGTAAGTGAAGCCGGGGAGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11173#2 ------------------------------------------------------------ consensus_11173#3 ------------------------------------------------------------ consensus_11173#0 ------------------------------------------------------------ consensus_11173#1 GGCTTTATGACAATAGGCGAGATGAGACTTACTTGCGTCGTGTTATTATGCCTCTCGAAA 60 consensus_11173#4 ------------------------------------------------------------ consensus_11173#2 ------------------------------------------------------------ consensus_11173#3 ------------------------------------------------------------ consensus_11173#0 ------------------------------------------------------------ consensus_11173#1 AGCTGCTGATCAAATACAAACGGATTATGCTTAAAGATACTGCCGTAAGTTCCTTTACAT 120 consensus_11173#4 ------------------------------------------------------------ consensus_11173#2 -----------AATCTTCTATCCAGTTCGGCAACACTGTTGAAAACTTTTCCTGGTGCCG 49 consensus_11173#3 ------------------------------------------------------------ consensus_11173#0 ------------------------------------------------------------ consensus_11173#1 ATAGAAGCATGTGTCGATTAGGTGTGCGCTATTTGCTTCGGTGCGAAACTTATGTTGCCT 180 consensus_11173#4 ------------------------------------------------------------ consensus_11173#2 ATAGTAGTGTGATGTCTCTGTAGTTTTCACATTTGCTCAGATCCCCTTTCTTTGATATCT 109 consensus_11173#3 ------------------------------------------------------------ consensus_11173#0 ---------------------------------------------CCTGGAATACCTTGA 15 consensus_11173#1 GGCGTACTCCGTTACGACAACGACATCAATGTCAACGATGAAATAGTCCTAATGACTACC 240 consensus_11173#4 ------------------------------------------------------------ consensus_11173#2 TGGTGAGGTATCCTTGTTTCCAGTCTATCGGCACTTGTTCTTCCTC-CCAAATCTTCCTG 168 consensus_11173#3 CGGCGTGATTGTTCAGTCCGCGTGACACCAGAAATGAAGAAACAC-----AAAGTTAGGG 55 consensus_11173#0 CGGCGTGATTGTTCAGTCCGCGTGACACCAGAAATGAAGAAACAC-----AAAGTTAGAG 70 consensus_11173#1 AAAGGCGAAGCCGTAGCTCTTGGTAGGTCATTTCAGACTAACATCAACTTCAAGCTGTTG 300 consensus_11173#4 ------------------------------------------------------------ consensus_11173#2 AATAGAATGTGGGAGCTATTCAGGCAGCTGAGTCCTTTGCGGTAATTTCAGAGGACAAGA 228 consensus_11173#3 CTGGTAATGTGGGAGCTATTCAGGCAGCTGAGTCCTTTGCGGTAATTTCAGAGGACAAGA 115 consensus_11173#0 CTGGTAATGTGGGAGCTATTCAGGCAGCTGAGTCCTTTGCGGTAATTTCAGAGGACAAGA 130 consensus_11173#1 CACTAATGACTACTGCAACAATCGCGACGTGTGACCATGGATTAGTCGCAAAACTGAAAA 360 consensus_11173#4 ------------------------------------------------------------ consensus_11173#2 AACCTACTTTAGATTGCAGCCAATGGCCATTATTGTTGAAAAATGTTCATCTTATGAATG 288 consensus_11173#3 AACCTACTTTAGATTGCAGCCAATGGCCATTATTGTTGAAAAATGTTCATCTTATGAATG 175 consensus_11173#0 AACCTACTTTAGATTGCAGCCAATGGCCATTATTGTTGAAAAATGTTCATCTTATGAATG 190 consensus_11173#1 GAGTGATAATGGAGCGTGATCTCTATCCTCGCCAGTGGGGTCGTGGTCCTGTTTCCATGG 420 consensus_11173#4 ----------------------------------------TCGTGGTCCCGTTTCCATGG 20 ** ** ** * * consensus_11173#2 TACGCGAGTG--TCATT--TCGAGGCTGACACAACAGGCTACTCACCTTTACACAGACCT 344 consensus_11173#3 TGCGCGAGTG--TCATT--TCGAGGCTGACACAACAGGCTACTCACCTTTACACAGACCT 231 consensus_11173#0 TACGCGAGTG--TCATT--TCGAGGCTGACACAACAGGCTACTCACCTTTACACAGACCT 246 consensus_11173#1 AAAGGAAAAAACTCGTTGCCCAAGGTTTACTTAAAAAGTTTTCCAAATCT-----GACGG 475 consensus_11173#4 AAAGGAAAAAACTCGTTGCCCAAGGTTTACTTAAAAAGTTTTCCAAATCT-----GACGG 75 * * ** ** * *** * ** ** * * * ** * * *** consensus_11173#2 CTGGATGAATACATCAAGTTTGTCTGAACCATCTCTGTAACTTTTAAGGAGTGGAGTCAT 404 consensus_11173#3 CTGGATGAATACATCAAGTTTGTCTGAACCATCTCTGTAACTTTTAAGGAGTGGAGTCAT 291 consensus_11173#0 CTGGATGAATACATCAAG-------------------------------AGTGGAGTCAT 275 consensus_11173#1 TGTGACGAATACTTCGAACTCTGTTGGATTGAAAACCAAGATGGAAGTAAGTGAAGCTGG 535 consensus_11173#4 TGTGACGAATACTTCGAACTCTGTTGGGTAGGTGATCAATGTTTGATAACGCGTACTTC- 134 ** ****** ** * * * * consensus_11173#2 CAACCTCGACAAGCCATGCAACCCATCATCTCATGAAGTTGTTGCGTGGGTGAAAAGAGC 464 consensus_11173#3 CAACCTCG---------------------------------------------------- 299 consensus_11173#0 CAACCTCGACAAGCCATGCAACCCATCATCTCATGAAGTTGTTGCGTGGGTGAAAAGAGC 335 consensus_11173#1 GGAGGCTGT-AACGTAAGTTCACTACTTTCCTTCGACATCTTTGATAGAAGGCGAATTAA 594 consensus_11173#4 --AGATTGA-AAACCAAGATGGAAGTAA----GTGAAGCCGGGGAGGG------------ 175 * * consensus_11173#2 CCTTG------------------------------------------------------- 469 consensus_11173#3 ------------------------------------------------------------ consensus_11173#0 CCTTGGAGTCAACAAAACCGGTCATAGTGGCACTTTAGACCCCAAAGTTTCTGGTTGTCT 395 consensus_11173#1 AGCACCAAATCCTTCCGACTCAAGTGACGATGAAATGGCAAGGTAAGTTTAGAATCCAAT 654 consensus_11173#4 ------------------------------------------------------------ consensus_11173#2 ------------------------------------------------------------ consensus_11173#3 ------------------------------------------------------------ consensus_11173#0 TATTGTCTGTATCGATCGTGCTACTAGGCTTGTAAAGTCTCAGCAAAGTGCTGGTAAAGA 455 consensus_11173#1 AGCTGTGATGATCAAGCATATGTCT----------------------------------- 679 consensus_11173#4 ------------------------------------------------------------ consensus_11173#2 ------------------------------------------------------------ consensus_11173#3 ------------------------------------------------------------ consensus_11173#0 GTATGTATGCATATTTAGACTTCACGAGTCCGTGGATGAGATCAAAAAGATACAAAAAGC 515 consensus_11173#1 ------------------------------------------------------------ consensus_11173#4 ------------------------------------------------------------ consensus_11173#2 ------------------------------------------------------------ consensus_11173#3 ------------------------------------------------------------ consensus_11173#0 TGTAGAAGGGCTGACTGGAGCATTATTCCAGAGACCCCCGCTAGTTGCTGCTGTTAAGCG 575 consensus_11173#1 ------------------------------------------------------------ consensus_11173#4 ------------------------------------------------------------ consensus_11173#2 ------------------------------------------------------------ consensus_11173#3 ------------------------------------------------------------ consensus_11173#0 CCAGCTCAGAGTTCGTACAATATACGAGTGTAAACTTTTGGAGTATGAAAAAAGTAAAAA 635 consensus_11173#1 ------------------------------------------------------------ consensus_11173#4 ------------------------------------------------------------ consensus_11173#2 ------------------------------------------------------------ consensus_11173#3 ------------------------------------------------------------ consensus_11173#0 TTTGGGGCTAATAATGGTGCGCTGTGAGGCTGGAACGTATGTTCGGACGCTTTGTGTGCA 695 consensus_11173#1 ------------------------------------------------------------ consensus_11173#4 ------------------------------------------------------------ consensus_11173#2 ------------------------------------------------------------ consensus_11173#3 ------------------------------------------------------------ consensus_11173#0 TTTGGGTTTGCTTTTAGGTTGTGGAGGTGTTATGGAGGAACTTAGGCGGTCTAAAACTGG 755 consensus_11173#1 ------------------------------------------------------------ consensus_11173#4 ------------------------------------------------------------ consensus_11173#2 ------------------------------------------------------------ consensus_11173#3 ------------------------------------------------------------ consensus_11173#0 TTTTATGTCTGAAAGGGACAATCTGGTTACTATGCATGATATACTAGATGCTAAGTGGCT 815 consensus_11173#1 ------------------------------------------------------------ consensus_11173#4 ------------------------------------------------------------ consensus_11173#2 ------------------------------------------------------------ consensus_11173#3 ------------------------------------------------------------ consensus_11173#0 TTATGACAATAGGCGAGATGAGACTTACTTGCGTCGTGTTATTATGCCTCTCGAAAAGCT 875 consensus_11173#1 ------------------------------------------------------------ consensus_11173#4 ------------------------------------------------------------ consensus_11173#2 ------------------------------------------------------------ consensus_11173#3 ------------------------------------------------------------ consensus_11173#0 GCTGATCAAACACAAACGGATTATGCTTAAAGATACTGCCGTGTGCGCTATTTGCTTCGG 935 consensus_11173#1 ------------------------------------------------------------ consensus_11173#4 ------------------------------------------------------------ consensus_11173#2 ------------------------------------------------------------ consensus_11173#3 ------------------------------------------------------------ consensus_11173#0 TGCGAAACTTATGTTGCCTGGCGTACTCCGTTACGACAACGACATCAATGTCAACGATGA 995 consensus_11173#1 ------------------------------------------------------------ consensus_11173#4 ------------------------------------------------------------ consensus_11173#2 ------------------------------------------------------------ consensus_11173#3 ------------------------------------------------------------ consensus_11173#0 AATAGTCCTAATGACTACCAAAGGCGAAGCCGTAGCTCTTGCTGTTGCACTAATGACTAC 1055 consensus_11173#1 ------------------------------------------------------------ consensus_11173#4 ------------------------------------------------------------ consensus_11173#2 ------------------------------------------------------------ consensus_11173#3 ------------------------------------------------------------ consensus_11173#0 TGCAACAATCGCGACGTGTGACCATGTATTAGTCGCAAAACTGAAAAGAGTGATAATGGA 1115 consensus_11173#1 ------------------------------------------------------------ consensus_11173#4 ------------------------------------------------------------ consensus_11173#2 --------------------------------------------------------- consensus_11173#3 --------------------------------------------------------- consensus_11173#0 GCGTGATCTCTATCCTCGCCAGTGGGGTCGTGGTCCTGTTTCCATGGAAAGGAAAAA 1172 consensus_11173#1 --------------------------------------------------------- consensus_11173#4 --------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||