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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11198#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 29 consensus length = 855 fasta sequence
[CGCAACTTATTTATTTAAATCATAGCTTTAAGTAATCGGTTTATATAGGTTTCTCGGTTGCCAAAATCACCACCTTCAACAAAGTGTTTTCCTTTCTTGCGAAAACCGCCACTAGGATTGCTCAACTTGAATGTCCATAGAAAAGCAACAGCATGTTTGAAGTTTG-GTCCAACTGTATATATTTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAG-TTTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGA-ACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCAC-GACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAACGTCATTTCCCGCTTTGCCATTCTGCGGTACTCATGCATGTATTTTTCCGC-TCTTTGCTTCATGAGAGACTTTAACTTCATATAAGTCTGTCGGCGTATCACCTTTTTGCGAGCTACTGTAATCAATTTTCGTCGTCTAATCTTTTCCTTCACGCGGAGACCTTCTGGCTTCCTAGGTCTCTTAGGAGTAGCTGACTGAGTATCAGTTTTTTTTACGTCCGACATGATCTGTTCACGATGGCACCTAACAGATATTAAACTGTCACGCTGTAGATTCAAAGACACAAACAGGCGCCAGGCAGAGGTA]
[+] EMBL CD074392 [CGCAACTTATTTATTTAAATCATAGCTTTAAGTAATCGGTTTATATAGGTTTCTCGGTTGCCAAAATCACCACCTTCAACAAAGTGTTTTCCTTTCTTGCGAAAACCGCCACTAGGATTGCTCAACTTGAATGTCCATAGAAAAGCAACAGCATGTTTGAAGTTTG GTCCAACTGTATATATTTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAG TTTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGA ACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCAC GACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAACGTCATTTCCCGCTTTGCCATTCTGCGGTACTCATGCATGTATTT ]
[-] EMBL BG931600 [ TCGGTTGCCAAAATCACCACCTTCAACAAAGTGTTTTCCTTTCTTGCGAAAACCGCCACTAGGATTGCTCAACTTGAATGTCCATAGAAAAGCAACAGCATGTTTGAAGTTTG GTCCAACTGTATATATTTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAG TTTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGA ACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGAa ]
[+] EMBL CD117035 [ GCCAAAATCACCACCTTCAACAAAGTGTTTTCCTTTCTTGCGAAAACCGCCACTAGGATTGCTCAACTTGAATGTCCATAGAAAAGCAACAGCATGTTTGAAGTTTG GTCCAACTGTATATATTTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAG TTTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGA ACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATCCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCAC GACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAACGTCATTTCTCGCTTTGCCATTCTGCGGTACTCATGCATGTATTTTTCCGC TCTTTGCTTCATGAGAGACTTTAACTTCATANTAGTCTG ]
[+] EMBL CD117124 [ GCCAAAATCACCACCTTCAACAAAGTGTTTTCCTTTCTTGCGAAAACCGCCACTAGGATTGCTCAACTTGAATGTCCATAGAAAAGCAACACCATGTTTGAAGTTGGCCCCCAACTGTATATATTTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAG TTTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGA ACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATCCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGA ]
[+] EMBL CD117742 [ GCCAAAATCACCACCTTCAACAAAGTGTTCTCCTTTCTTGCGAAAACCGCCACTAGGATTGCTCAACTTGAATGTCCATAGAAAAGCAACAGCATGTTTGAAGTTTG GTCCAACTGTATATATTTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAG TTTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGA ACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCCTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCAC GACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAA ]
[+] EMBL CD117683 [ GCCAAAATCACCACCTTCAACAAAGTGTTCTCCTTTCTTGCGAAAACCGCCACTAGGATTGCTCAACTTGAATGTCCATAGAAAAGCAACAGCATGTTTGAAGTTTG GTCCAACTGTATATATTTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAG TTTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGA ACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCAC GACAAACGCGAGTTTTGGTTCAGCTGGAACATAGA ]
[-] EMBL CD194335 [ TGCGAAAACCGCCACTAGGATTGCTCAACTTGAATGTCCATAGAAAAGCAACAGCATGTTTGAAGTTTG GTCCAACTGTATATATTTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAG TTTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGA ACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCAC GACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAACGTCATTTCCCGCTTTGCCATTCTGCGGTACTCATGCATGTATTTTTCCGCTTCTTTGCTTCATGAGAGACTTTAACTTCATATAAGTCTGTCGGCGT ]
[-] EMBL CD117206 [ TGCGAAAACCGCCACTAGGATTGCTCAACTTGAATGTCCATAGAAAAGCAACAGCATGTTTGAAGTTTG GTCCAACTGTATATATTTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAG TTTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGA ACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCAC GACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAACGTCATTTCCCGCTTTGCCATTCTGCGGTACTCATGCATGTATTTTTCCGC TCTTTGCTTCATGAGAGACTTTAACTTCATATAAGTCTGT ]
[-] EMBL CD083990 [ GCCACTAGGATTGCTCAACTTGAATGTCCATAGAAAAGCAACAGCATGTTTGAAGTTTG GTCCAACTGTATATATTTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAG TTTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGA ACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCACAGACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTCCT ]
[+] EMBL CD144414 [ TGCTCAACTTGAATGTCCATAGAAAAGCAACAGCATGTTTGAAGTTTG GTCCAACTGTATATATTTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAG TTTGTGTTGAATTAGCTCATTTGTTANAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGA ACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATCGCANCAACATCCCGTTGTTGATTT ]
[+] EMBL CD144390 [ TGCTCAACTTGAATGTCCATAGAAAAGCAACAGCATGTTTGAAGTTTG GTCCAACTGTATATATTTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAG TTTGTGTTGAATTAGCTCATTTGTTANAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGA ACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTT ]
[+] EMBL CD144436 [ TGCTCAACTTGAATGTCCATAGAAAAGCAACAGCATGTTTGAAGTTTG GTCCAACTGTATATATTACATGTACAAGGTCCTCAACGCATATTNAACC AGATGTCCAAGTTTTGTGTTGAATTA ]
[-] EMBL CD118284 [ TCAACTTCAATGTCCATATAAAAGCATCAGCATGTTTAAAGTTTG GTCCAACTGTATATATTTCATGTCCAAGGTCCTCGACGCATATTAATCCAAGATGTCCAAG TGTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTT ACGACACAATTTTTAGAGTAGGATAACCCCAAGCGACGTACGGATCAATTATTAGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCT ]
[+] EMBL CD147311 [ TGAATGTCCATAGAAAAGCAACAGCATGTTTGAAGTTTG GTCCAACTGTATATATTTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAG TTTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGA ACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATCGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTG ]
[+] EMBL CD122711 [ AATGTCCATAGAAAAGCAACAGCATGTTTGAAGTTTG GTCCAACTGTATATATTTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAG TTTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGA ACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGCTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCAC GACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTAAGCATTACGCTGCAACGTCATTTCCCGCTTTGCCATTCTGCGGTACTCATGCATGTATTTTTCCGC TCTTTGCTTCATGAGAGACTTTAACTTCATATAAGTCTGTCGGCGTATCACCTTTTTGCGAGCTACTGTAATCGATTTTCGTCGTCT ]
[+] EMBL CD121438 [ TATTTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAG TTTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGA ACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCAC GACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAACGTC ]
[+] EMBL CD121447 [ TATTTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAG TTTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGA ACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCAC GACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAACGTC ]
[+] EMBL CD121444 [ TATTTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAG TTTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGA ACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCAC GACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAACGTCATTTCCCGCTTTGCCATTC ]
[+] EMBL CD121487 [ TATTTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAG TTTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGA ACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCAC GACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAACGTCATTTCCCGCTTTGACAT ]
[+] EMBL CD121415 [ TATTTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAG TTTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGA ACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGG ]
[+] EMBL CD121491 [ TATTTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAG TTTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGA ACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCAC GACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAACGTCATTTCCCGCTTT ]
[+] EMBL CD121449 [ TATTTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAG TTTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTCGTGTACCATGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGA ACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCAC GACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAACGTCATTT ]
[+] EMBL CD111495 [ AGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCAC GACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAACGTCATTTCCCGCTTTGCCATTCTGCGGTACTCATGCATGTATTTTTCCGC TCTTTGCTTCATGAGAGACTTTAACTTCATATAAGTCTGTCGGCGTATCACCTTTTTGCGAGCTACTGTAATCAATTTTCGTCGTCTAATCTTTTCCTTCACGCGGAGACCTTCTGGC TCCTAGGTCTCTTAGGAGTAGCTGACTGAGTATCAGTTTTTTTTACGTCCGACATGATCTGTTCACGATGGCACCTAACAGATATT ]
[-] EMBL CD148768 [ GCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCAC GACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAACGTCATTTCCCGCTTTGCCATTCTGCGGTACTCATGCATGTATTTTTCCGC TCTTTGCTTCATGAGAGACTTTAACTTCATATAAGTCTGTCGGCGTATCACCTTTTTGCGAGCTACTGTAATCAATTTTCGTCGTCTAATCTTTTCCTTCACGCGGAGACCTTCTGGCTTCCTAGGTCTCTTAGGAGTAGCTGACTGAGTATCAGTTTTTTTTACGTCCGACATGATCTGTTCACGATGGCACCTAACAGATATTAAACTGTCACGCTGTAGATTCAAAGACACAAACAGGCGCCAGGCAGAGGTA]
[-] EMBL CD111397 [ ATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCAC GACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAACGTCATTTCCCGCTTTGCCATTCTGCGGTACTCATGCATGTATTTTTCCGC TCTTTGCTTCATGAGAGACTTTAACTTCATATAAGTCTGTCGGCGTATCACCTTTTTGCGAGCTACTGTAATCAATTTTCGTCGTCTACTCTTTTCCTTCACGCGGAGACCTTCTGGCTTCCTAGGTCTCTTAGGAGTAGCTGACTGAGTATCAG TTTTTTTACGTCCGACATGATCTGTTCACGATGGCACCTAACAGATATTAAACTGTCACGCT ]
[+] EMBL CD111308 [ TCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCAC GACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAACGTCATTTCCCGCTTTGCCATTCTGCGGTACTCATGCATGTATTTTTCCGC TCTTTGCTTCATGAGAGACTTTAACTTCATATAAGTCTGTCGGCGTATCACCTTTTTGCGAGCTACTGTAATCAATTTTCGTCGTCTAATCTTTTCCTTCACGCGGAGACCTTCTGGCTTCCTAGGTCTCTTAGGAGTAGCTGACTGAGTATCAGTTTTTTTTACGTCCGACATGATCTGTTCACGATGGCACCTAACAGATATTAAACTGTCACGC ]
[-] EMBL CD111065 [ TCGCAC GACAAACGCGAGTTTTGCTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAACGTCATTTCCCGCTTTGCCATTCTGCGGTACTCATGCATGTATTTTTCCGC TCTTTGCTTCATGAGAGACTTTAACTTCATATAAGTCTGTCGGCGTATCACCTTTTTGCGAGCTACTGTAATCAATTTTCGTCGTCTAATCTTTTCCTTCACGCGGAGACCTTCTGGCTTCCTAGGTCTCTTAGGAGTAGCTGACTGAGTATCAGTTTTTTTTACGTCCGACATGATCTGTTCACGATGGCACCTAACAGATATTAAACTGTCACGCat ]
[-] EMBL CD184109 [ GTCTCCCGTCTTCTTAGCATTACGCTGCAACGTCATTTCCCGCATAGCCATTCTGCGGTACTCATGCATGTATTTTCCCGC TCTATGCTTCATGAGAGACTTTAACTTCATATAAGTCTGTCGGCGTATCACCTTTATGCGAGATACTGTAATCAATGTTCGTCGTCTAATCTTTTCCTTCACGCGGAGACCTTTTGGCTTCATAGGTCTCTCAGAAGTAGCTGACTGAGCATCAGTTTTTTTTACGTCCGACATGATCTGTTCACGATGGCACCTAACAGATATTAAACTGTCACGCTGTACATTCAAAGACACAAACAGGCGCCAGGCAGAGGTA]
[+] EMBL CD163639 [ CATGAGAGACTTTAACTTCATATAAGTCTGTCGGCGTATCACCTTTTTGCGAGCTACTGTAATCAATTTTCGTCGTCTAATCTTTTCCTTCACGCGGAGACCTTCTGGCTTCCTAGGTTTCTTAGGAGTAGCTGACTGAGTATCAGTTTTTTTTACGTCCGACATGATCTGTTCACGATGGCACCTAACAGATATTAAACTGTCACGCTGTAGATTCAAAG ]
consensusID : consensus_11198#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 781 fasta sequence
[CACTATTTATTTAATCTAGCTTAAGTATCGGTTTAATAGGTTTTCGGTGCCNAAATCACACCCTTCANCAANGTGTTTCCTTTCTGCGAANNCCGCCACTAGATTGCTCACTGAAATGTCCATAGNAAAGCAACAGCATGTTGAAGTTTGGTCCAACTGTATATATNTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAGTTTG-TGTTGAATTAG-CTCATTTG--TTAAAGGGAGTCGTGTA-CCAT-GGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGAACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCACGACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAACGTCATTTCCCGCTTTGCCATTCTGCGGTACTCATGCATGTATTTTTCCGCTCTTTGCTTCATGAGAGACTTTAACTTCATATAAGTCTGTCGGCGTATCACCTTTTTGCGAGCTACTGTAATCAATTTTCGTCGTCTAATCTTTTCCTTCACGCGGAGACCTTCTGGCTTCCTAGGTCTCTTAGGAGTAGCTGACTGAGTATCAGTTTTTTTTACGTCCGAGCCCTCGTGCCGAATTTTTGGCCTCGG]
[-] EMBL CD080481 [CACTATTTATTTAATCTAGCTTAAGTATCGGTTTAATAGGTTTTCGGTGCCNAAATCACACCCTTCANCAANGTGTTTCCTTTCTGCGAANNCCGCCACTAGATTGCTCACTGAAATGTCCATAGNAAAGCAACAGCATGTTGAAGTTTGGTCCAACTGTATATATNTCATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAGTTTG TGTTGAATTAG CTCATTTG TTAAAGGGAGTCGTGTA CCAT GGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGAACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCACGACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAACGTCATTTCCCGCTTTGCCATTCTGCGGTACTCATGCATGTATTTTTCCGCTCTTTGCTTCATGAGAGACTTTAACTTCATATAAGTCTGTCGGCGTATCACCTTTTTGCGAGCTACTGTAATCAATTTTCGTCGTCTAATCTTTTCCTTCACGCGGAGACCTTCTGGCTTCCTAGGTCTCTTAGGAGTAGCTGACTGAGTATCAGTTTTTTTTACGTCCGAGCCCTCGTGCCGAATTTTTGGCCTCGG]
[-] EMBL CD187051 [ ATGTACAAGGTCCTCAACGCATATTAAACCAAGATGTCCAAGTTTGTTGTTGAATTAGCCTCATTTGGTTTAAAGGGAGTCGTGTACCCATGGGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGAACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCACGACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAA ]
[-] EMBL CD134275 [ TTAAACCAAGATGTCCAAGTTTG TGTTGAATTAG CTCATTTG TTAAAGGGAGTCGTGTA CCAT GGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGAACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATCGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCACGACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAACGTCATTTCCCGCTTTGCCATTCTGCGGTACTCATGCATGTATTTTTCCGCTCTTTGCTTCATGAGAGACTTTAACTTCATATAAGTCTGTCGGCGTATCACCTTTTTGCGAGCTACTGTAATCAATTTTCGTCGTCTAATCTTTTCCTTCACGCGGAGACCTTCTGGCTTCCTAGGTCTCTTAGGAGTAGCTGGCTGAGTATCAGTTT ]
[+] EMBL CD165848 [ CAAGATGTCCAAGTTTG TGTTGAATTAG CTCATTTG TTAAAGGGAGTCGTGTA CCAT GGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGAACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCACGACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAACGTCATTTCCCGCTTTGCCATTCTGCGGTACTCATGCATGTATTTTTCCGCTCTTTGCTTCATGAGAGACTTTAACTTCATATAAGTCTGTCGGCGTATCACCTTTTTGC ]
[-] EMBL CD165595 [ AAGTTTG CGTTGAATTAG CTCATTTG TTAAAGGGAGTCGTGTA CCAT GGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGAACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATA TCTTTTTTGGGCacgcag ]
[+] EMBL CD154996 [ TTTG TGTTGAATTAG CTCATTTG TTAAAGGGAGTCGTGTA CCAT GGTACTTACAAAATCCGCGTTTATAAATGAGTTGACGAACAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTGTTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTAATACCCCGGATTCGCACGACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCCGTCTTCTTAGCATTACGCTGCAACGTCATTTCCCGCTTTGCCATTCTGCGGTACTCATGCAT ]
consensusID : consensus_11198#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 296 fasta sequence
[TGAATGTCCANAGAAAAACCAACAGCATGTTTGAAGNNNTGGNCCCACTGTATATATTTCATGTACNAGGTCCTCCNACGCATATTAAACCNAGATGTCCAAGTTTGTTGGTGAATTAGCTCATTTGTTAAAAGGGAGTCGTGTACCNTGGTACTTACCCAAATCCGCGTTTATAAATGAGTTGACGANCAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGNTCAATTANTCGAAGCATGTTAAGAGTTGCCTTANTTAATCGCACCAACATCCCGTTGTTGATTTTCCGG]
[-] EMBL SM287 [TGAATGTCCANAGAAAAACCAACAGCATGTTTGAAGNNNTGGNCCCACTGTATATATTTCATGTACNAGGTCCTCCNACGCATATTAAACCNAGATGTCCAAGTTTGTTGGTGAATTAGCTCATTTGTTAAAAGGGAGTCGTGTACCNTGGTACTTACCCAAATCCGCGTTTATAAATGAGTTGACGANCAATTTTAAGACTAGGATAACCCCAAGCGACGTACGGNTCAATTANTCGAAGCATGTTAAGAGTTGCCTTANTTAATCGCACCAACATCCCGTTGTTGATTTTCCGG]
consensusID : consensus_11198#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 234 fasta sequence
[CTTATTTATTTATCTCTATAGCTTTTAGAATCGGTTTATATAGGTTTCTCGTTGCCAAAATCACCACCTTCAACAAAGTGGTTTCCCTTTTTGCGAAAACCGCCACTAGGATTGCTCAACTTGTATGTCCATAGAATAGCAACAGCATGTTTTTAAGTTTGGTCCAACTGTATATTTTTTTTGTACAAGGTCCTCAACGCATATTATCCCAAGATGTCCAAGTTTGTTTTGAAT]
[+] EMBL SMAA40600 [CTTATTTATTTATCTCTATAGCTTTTAGAATCGGTTTATATAGGTTTCTCGTTGCCAAAATCACCACCTTCAACAAAGTGGTTTCCCTTTTTGCGAAAACCGCCACTAGGATTGCTCAACTTGTATGTCCATAGAATAGCAACAGCATGTTTTTAAGTTTGGTCCAACTGTATATTTTTTTTGTACAAGGTCCTCAACGCATATTATCCCAAGATGTCCAAGTTTGTTTTGAAT]
consensusID : consensus_11198#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 207 fasta sequence
[TNNTTCAAACTTGAATGTCCCATAGNAAAGNCGANCAGNCATGTTTGANNAAAAATCCAACCTGTATATATTTTCATGTACAAGGTTCCTCNACGCATATTAAAACCAAGATGTNCCAAGTTTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTNGTGTAGCCATGGTACTTACAAAATGCCGCGTTTATAAATGAGTTGACGAACA]
[-] EMBL AA559364 [TNNTTCAAACTTGAATGTCCCATAGNAAAGNCGANCAGNCATGTTTGANNAAAAATCCAACCTGTATATATTTTCATGTACAAGGTTCCTCNACGCATATTAAAACCAAGATGTNCCAAGTTTGTGTTGAATTAGCTCATTTGTTAAAGGGAGTNGTGTAGCCATGGTACTTACAAAATGCCGCGTTTATAAATGAGTTGACGAACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11198#2 ------------------------------------------------------------
consensus_11198#4 ------------------------------------------------------------
consensus_11198#1 ---------------CACTATTTATTTAATCTAGCTTAAGTATCGGTTTAATAGGTTTTC 45
consensus_11198#0 CGCAACTTATTTATTTAAATCATAGCTTTAAGTAATCGGTTTATATAGGTTTCTCGGTTG 60
consensus_11198#3 ------------------------------------------------------------
consensus_11198#2 ------------------------------------------------------------
consensus_11198#4 --------------------------------------------------------TNNT 4
consensus_11198#1 GGTGCCNAAATCACACCCTTCANCAANGTGTTTCCTTTCTGCGAANNCCGCCACTAGATT 105
consensus_11198#0 CCAAAATCACCACCTTCAACAAAGTGTTTTCCTTTCTTGCGAAAACCGCCACTAGGATTG 120
consensus_11198#3 ------------------------------------------------------------
consensus_11198#2 -------TGAATGTCC-ANAGAAAAACCAAC--AGCATGTTTGAAGNNNTGGNCCCACTG 50
consensus_11198#4 TCAAACTTGAATGTCCCATAGNAAAGNCGANCAGNCATGTTTGANNAAAAATCCAACCTG 64
consensus_11198#1 GCTCACTGAAATGTCC-ATAGNAAAGC-AAC--AGCATGTT--GAAGTTTGGTCCAACTG 159
consensus_11198#0 CTCAACTTGAATGTCC-ATAGAAAAGC-AAC--AGCATGTTTGAAGTTTGGTCCAA-CTG 175
consensus_11198#3 -----CTTATTTATTTATCTCTATAGCTTTTAGAATCGGTTT-ATATAGGTTTCTCGTTG 54
* * * * *** * **
consensus_11198#2 TATATATTT-CATGTACNAGGTCCTCCNACGCATATTAAA-CCNAGATGTCCAAGTTTGT 108
consensus_11198#4 TATATATTTTCATGTACAAGGTTCCTCNACGCATATTAAAACCAAGATGTNCCAAGTTTG 124
consensus_11198#1 TATATATNT-CATGTACAAGGT-CCTCAACGCATATTAAA-CCAAGATGTCC-AAGTTTG 215
consensus_11198#0 TATATATTT-CATGTACAAGGT-CCTCAACGCATATTAAA-CCAAGATGTCC-AAGTTTG 231
consensus_11198#3 CCAAAATCACCACCTTCAACAAAGTGGTTTCCCTTTTTG--CGAAAACCGCCACTAGGAT 112
* ** ** * * * * * ** * * * *
consensus_11198#2 TGGTGAATTAGCTCATTTGTTAAAAGGGAGTCGTGTA-CCNTGGTACTTACCCAAATCCG 167
consensus_11198#4 TGTTGAATTAGCTCATTTGTTAAA-GGGAGTNGTGTAGCCATGGTACTTACAAAATGCCG 183
consensus_11198#1 TGTTGAATTAGCTCATTTGTTAAA-GGGAGTCGTGTA-CCATGGTACTTACAAAAT-CCG 272
consensus_11198#0 TGTTGAATTAGCTCATTTGTTAAA-GGGAGTCGTGTA-CCATGGTACTTACAAAAT-CCG 288
consensus_11198#3 TGCTCAACTTGTATGTCCATAGAATAGCAACAGCATGTTTTTAAGTTTGGTCCAACTGTA 172
** * ** * * * * ** * * * * * * **
consensus_11198#2 CGTTTAT---AAATGAGTTGACGANCAATTTTAAGACTAGGATAACCCCAAGCGACGTAC 224
consensus_11198#4 CGTTTAT---AAATGAGTTGACGAACA--------------------------------- 207
consensus_11198#1 CGTTTAT---AAATGAGTTGACGAACAATTTTAAGACTAGGATAACCCCAAGCGACGTAC 329
consensus_11198#0 CGTTTAT---AAATGAGTTGACGAACAATTTTAAGACTAGGATAACCCCAAGCGACGTAC 345
consensus_11198#3 TATTTTTTTTGTACAAGGTCCTCAACGCATATTATCCCAAGATGTCCAAGTTTGTTTTGA 232
*** * * ** * * *
consensus_11198#2 GGNTCAATTANTCGAAGCATGTTAAGAGTTGCCTTANTTAATCGCACCAACATCCCGTTG 284
consensus_11198#4 ------------------------------------------------------------
consensus_11198#1 GGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTG 389
consensus_11198#0 GGATCAATTATTCGAAGCATGTTAAGAGTTGCCTTATTTAATAGCACAAACATCCCGTTG 405
consensus_11198#3 AT---------------------------------------------------------- 234
consensus_11198#2 TTGATTTTCCGG------------------------------------------------ 296
consensus_11198#4 ------------------------------------------------------------
consensus_11198#1 TTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTA 449
consensus_11198#0 TTGATTTGCCGGAGGCGAAACAGTTGCATAGTCTTTCTTGGGCGTGGGTGGACACCGTTA 465
consensus_11198#3 ------------------------------------------------------------
consensus_11198#2 ------------------------------------------------------------
consensus_11198#4 ------------------------------------------------------------
consensus_11198#1 ATACCCCGGATTCGCACGACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCC 509
consensus_11198#0 ATACCCCGGATTCGCACGACAAACGCGAGTTTTGGTTCAGCTGGAACATAGAAGTCTCCC 525
consensus_11198#3 ------------------------------------------------------------
consensus_11198#2 ------------------------------------------------------------
consensus_11198#4 ------------------------------------------------------------
consensus_11198#1 GTCTTCTTAGCATTACGCTGCAACGTCATTTCCCGCTTTGCCATTCTGCGGTACTCATGC 569
consensus_11198#0 GTCTTCTTAGCATTACGCTGCAACGTCATTTCCCGCTTTGCCATTCTGCGGTACTCATGC 585
consensus_11198#3 ------------------------------------------------------------
consensus_11198#2 ------------------------------------------------------------
consensus_11198#4 ------------------------------------------------------------
consensus_11198#1 ATGTATTTTTCCGCTCTTTGCTTCATGAGAGACTTTAACTTCATATAAGTCTGTCGGCGT 629
consensus_11198#0 ATGTATTTTTCCGCTCTTTGCTTCATGAGAGACTTTAACTTCATATAAGTCTGTCGGCGT 645
consensus_11198#3 ------------------------------------------------------------
consensus_11198#2 ------------------------------------------------------------
consensus_11198#4 ------------------------------------------------------------
consensus_11198#1 ATCACCTTTTTGCGAGCTACTGTAATCAATTTTCGTCGTCTAATCTTTTCCTTCACGCGG 689
consensus_11198#0 ATCACCTTTTTGCGAGCTACTGTAATCAATTTTCGTCGTCTAATCTTTTCCTTCACGCGG 705
consensus_11198#3 ------------------------------------------------------------
consensus_11198#2 ------------------------------------------------------------
consensus_11198#4 ------------------------------------------------------------
consensus_11198#1 AGACCTTCTGGCTTCCTAGGTCTCTTAGGAGTAGCTGACTGAGTATCAGTTTTTTTTACG 749
consensus_11198#0 AGACCTTCTGGCTTCCTAGGTCTCTTAGGAGTAGCTGACTGAGTATCAGTTTTTTTTACG 765
consensus_11198#3 ------------------------------------------------------------
consensus_11198#2 ------------------------------------------------------------
consensus_11198#4 ------------------------------------------------------------
consensus_11198#1 TCCGAGCCCTCGTGCCGAATTTTTGGCCTCGG---------------------------- 781
consensus_11198#0 TCCGACATGATCTGTTCACGATGGCACCTAACAGATATTAAACTGTCACGCTGTAGATTC 825
consensus_11198#3 ------------------------------------------------------------
consensus_11198#2 ------------------------------
consensus_11198#4 ------------------------------
consensus_11198#1 ------------------------------
consensus_11198#0 AAAGACACAAACAGGCGCCAGGCAGAGGTA 855
consensus_11198#3 ------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||