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Schistosoma mansoni
cluster # 11204 cluster # 11204       Sequences # 39       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11204#0 length = 905 sequences # 28  
consensus_11204#1 length = 422 sequences # 9  
consensus_11204#2 length = 260 sequences # 1  
consensus_11204#3 length = 218 sequences # 1  

consensusID : consensus_11204#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 28
consensus length = 905
fasta sequence
                              [TANCGGTTTTTACACACAATTGCAATTATATATAAAGCGTTAAAAGGCTGAAGAGTATACCTTAACAACTGACCACAATGGAACTACACAGTATAATCAGATAACATTGTGATACTGTTATTAACTGCTTTTACAAACCCACTTAAGAAACAACTCACCACTCCTTCGGAAAAACCATTTGTCGTTTATAGAATCTAGATTTTGGTGAGGTCCTTTTAACTTCGGGTTTTGATTCCATGAAATAAACTTTTGGCAGACTAGAGATTACAACTAATGATAGCTGTTTCAATAACGGTGTCATTCGACACTGCTGGAATTCAGACAAACAGTACCCGAGATTACAACTTATGAAGATGAACAGGATATTTTGATAAACTTGTGTTGGGGATGAAAAAACTTGGTACAAGATATAGAAAATAACTTCCAACAAAAGGTTTATTCGACATTCACTTTAGGATGACTTTACATTGGAATTCGGGCCTCTTCTTCTTCCACCAGGTTGTTGTACAACTGCTACAAATCGCTTATTGTACTGCATCCTACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT--GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA-CACGGGTATCAAACGACTTAACGAACACCTTCATGTTTCTCAAACAACCTAGTCACGCCAAATTTGTAAACCCGCAACTA]

[+] EMBL CD148325             [TANCGGTTTTTACACACAATTGCAATTATATATAAAGCGTTAAAAGGCTGAAGAGTATACCTTAACAACTGACCACAATGGAACTACACAGTATAATCAGATAACATTGTGATACTGTTATTAACTGCTTTTACAAACCCACTTAAGAAACAACTCACCACTCCTTCGGAAAAACCATTTGTCGTTTATAGAATCTAGATTTTGGTGAGGTCCTTTTAACTTCGGGTTTTGATTCCATGAAATAAACTTTTGGCAGACTAGAGATTACAACTAATGATAGCTGTTTCAATAACGGTGTCATTCGACACTGCTGGAATTCAGACAAACAGTACCCGAGATTACAACTTATGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CD078504             [                                                                                                                                                                                             AGAATCTAGATTTTGGTGAGGTCCTTTTAACTTCGGGTTTTGATTCCATGAAATAAACTTTTGGCAGACTAGAGATTACAACTAATGATAGCTGTTTCAATAACGGTGTCATTCGACACTGCTGGAATTCAGACAAACAGTACCCGAGATTACAACTTATGAAGATGAACAGGATATTTTGATAAACTTGTGTTGGGGATGAAAAAACTTGGTACAAGATATAGAAAATAACTTCCAACAAAAGGTTTATTCGACATTCACTTTAGGATGACTTTACATTGGAATTCGGGCCTCTTCTTCTTCCACCAGGTTGTTGTACAACTGCTACAAATCGCTTATTGTACTGCATCCTACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT  GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAG                                                                                                                                ]
[+] EMBL CD072976             [                                                                                                                                                                                             AGAATCTAGATTTTGGTGAGGTCCTTTTAACTTCGGGTTTTGATTCCATGAAATAAACTTTTGGCAGACTAGAGATTACAACTAATGATAGCTGTTTCAATAACGGTGTCATTCGACACTGCTGGAATTCAGACAAACAGTACCCGAGATTACAACTTATGAAGATGAACAGGATATTTTGATAAACTTGTGTTGGGGATGAAAAAACTTGGTACAAGATATAGAAAATAACTTCCAACAAAAGGTTTATTCGACATTCACTTTAGGATGACTTTACATTGGAATTCGGGCCTCTTCTTCTTCCACCAGGTTGTTGTACAACTGCTACAAATCGCTTATTGTACTGCATCCTACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT  GAGAATCACTAATTAATGATCCACAGTTGTATAA                                                                                                                                                                       ]
[+] EMBL CD097483             [                                                                                                                                                                                                                                                                                                                                                                                                                          TAGAAAATAACTTCCAACAAAAGGTTTATTCGACATTCACTTTAGGATGACTTTACATTGGAATTCGGGCCTCTTCTTCTTCCACCAGGTTGTTGTACAACTGCTACAAATCGCTTATTGTACTGCATCCTACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT  GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTT                                           ]
[+] EMBL CD097482             [                                                                                                                                                                                                                                                                                                                                                                                                                          TAGAAAATAACTTCCAACAAAAGGTTTATTCGACATTCACTTTAGGATGACTTTACATTGGAATTCGGGCCTCTTCTTCTTCCACCAGGTTGTTGTACAACTGCTACAAATCGCTTATTGTACTGCATCCTACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT  GAGAATCACTA                                                                                                                                                                                              ]
[-] EMBL BF440143             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TCTTCTTCTTCCACCAGGTTGTTGTACAACTGCTACAAATCGCTTATTGTACTGCATCCTACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCNCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT  GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTTTCTCAAACAAC                                ]
[+] EMBL CD141771             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CTTCCACCAGGTTGTTGTACAACTGCTACAAATCGCTTATTGTACTGCATCCTACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGATAGATGTGTCACTGGACAGAGATGCTAAAGATT  GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCT                                                  ]
[-] EMBL CD130724             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CAGGTTGTTGTACAACTGCTACAAATCGCTTATTGTACTGCATCCTACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGATAGATGTGTCACTGGACAGAGATGCTAAAGATT  GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAAC                                                          ]
[-] EMBL CD163035             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AACTGCTACAAATCGCTTATTGTACTGCATCCTACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT  GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGCCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTTTCTCAAACAACCTAGTCACGCCAAATTTG              ]
[-] EMBL CD132742             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGATAGATGTGTCACTGGACAGAGATGCTAAAGATT  GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTTTCTCAAACAACCTAGTCACGCCAAATTTGTAAACCCGCAACTA]
[-] EMBL CD148130             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ACC TTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT  GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGCCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTTT                                          ]
[+] EMBL CD148059             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT  GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTGGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTT                                           ]
[+] EMBL CD147955             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT  GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTT                                           ]
[-] EMBL CD148078             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ACGGACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT  GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATC TTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTACCAAACGACTTAACGAACACCTTCATGTTTCTCAAACAAC                                ]
[+] EMBL CD148174             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAGGATT  GAGAATCACTAATTAATGATCCACAGTTGTATTACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTT                                           ]
[+] EMBL CD148042             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT  GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTT                                           ]
[+] EMBL CD147985             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT  GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTT                                           ]
[+] EMBL CD147984             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT  GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTT                                           ]
[+] EMBL CD097437             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT  GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGGATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTT                                           ]
[+] EMBL CD147974             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT  GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTT                                           ]
[-] EMBL CD148084             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT  GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTTTCTCGGACGTCCTAGTCACGACAAATTTG              ]
[-] EMBL CD148082             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CGAACTTTACCAGCGCGCGCAAGAGATCCATGGTCCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT  GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTTT                                          ]
[-] EMBL SMRAP143             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTTATACCGGAACNACGACATCGACAGATGTGTCACTGGACAGAGATNCCCAAGATTGGGAGAATCACT                                                                                                                                                                                               ]
[+] EMBL CD148049             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT  GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTT                                           ]
[-] EMBL BG930427             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GAGATCCATGGACCTTACTTCCTAATGCCGG ACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT  GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTTTCTCAAACAACCTAGTCACGCCAAATTTGTAgaa         ]
[-] EMBL CD148083             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT  GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGAGCACGGGTATCAAACGACTTAACGAACACCTTCACGTTT                                          ]
[-] EMBL CD148170             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GTCACTGGACAGAGATGCCAAAGATT  GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTTT                                          ]
[-] EMBL CD191944             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TCACTGGACAGAGATGCCAAAGATT  GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAAC                                                      ]


>consensus_11204#0 TANCGGTTTTTACACACAATTGCAATTATATATAAAGCGTTAAAAGGCTGAAGAGTATAC CTTAACAACTGACCACAATGGAACTACACAGTATAATCAGATAACATTGTGATACTGTTA TTAACTGCTTTTACAAACCCACTTAAGAAACAACTCACCACTCCTTCGGAAAAACCATTT GTCGTTTATAGAATCTAGATTTTGGTGAGGTCCTTTTAACTTCGGGTTTTGATTCCATGA AATAAACTTTTGGCAGACTAGAGATTACAACTAATGATAGCTGTTTCAATAACGGTGTCA TTCGACACTGCTGGAATTCAGACAAACAGTACCCGAGATTACAACTTATGAAGATGAACA GGATATTTTGATAAACTTGTGTTGGGGATGAAAAAACTTGGTACAAGATATAGAAAATAA CTTCCAACAAAAGGTTTATTCGACATTCACTTTAGGATGACTTTACATTGGAATTCGGGC CTCTTCTTCTTCCACCAGGTTGTTGTACAACTGCTACAAATCGCTTATTGTACTGCATCC TACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTT GCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAA CAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATTGAGAATCACTAATTA ATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTA GAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGACACGGGTATCAAACG ACTTAACGAACACCTTCATGTTTCTCAAACAACCTAGTCACGCCAAATTTGTAAACCCGC AACTA



consensusID : consensus_11204#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 422
fasta sequence
                              [AAAAGGTTTATTCGACATTCACTTTAGGATGACTTTACATTGGAATTCGGGCCTCTTCTTCTTCCACCAGGTTGTTGTACAACTGCTACAAATCGCTTATTGTACTGCATCCTACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGATAGATGTGTCACTGGACAGAGATGCTAAAGATTGAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGAACGGGATCAACCTCGTCCGATTCTG]

[-] EMBL CD084206             [AAAAGGTTTATTCGACATTCACTTTAGGATGACTTTACATTGGAATTCGGGCCTCTTCTTCTTCCACCAGGTTGTTGTACAACTGCTACAAATCGCTTATTGTACTGCATCCTACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATTGAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGAACGGGATCAACCTCGTCCGATTCTG]
[+] EMBL CD135151             [                                                      CTACTTCTTCCACCAGGTTGTTGTACAACTGCTACAAATCGCTTATTGTACTGCATCCTACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGATAGATGTGTCACTGGACAGAGATGCTAAAGATTGAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATT                                                                                       ]
[-] EMBL CD138949             [                                                                                                   TTGTACTGCATCCTACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGATAGATGTGTCACTGGACAGAGATGCTAAAGATTGAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATC                                                                 ]
[+] EMBL CD139070             [                                                                                                                                        ACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGATAGATGTGTCACTGGACAGAGATGCTAAAGATTGAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAAT                                                                  ]
[+] EMBL CD139021             [                                                                                                                                        ACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGATAGATGTGTCACTGGACAGAGATGCTAAAGATTGAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAAT                                                                  ]
[+] EMBL CD139022             [                                                                                                                                        ACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGATAGATGTGTCACTGGACAGAGATGCTAAAGATTGAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAAT                                                                  ]
[-] EMBL CD138968             [                                                                                                                                         CTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGATAGATGTGTCACTGGACAGAGATGCTAAAGATCGAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATC                                                                 ]
[+] EMBL CD138963             [                                                                                                                                                                                                          ATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGATAGATGTGCCACTGGACAGAGATGCTAAAGATTGAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAAT                                                                  ]
[+] EMBL CD134880             [                                                                                                                                                                                                                                                           GTCGCTGGACAGAGATGCTAAAGATTGAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATT                                                                                       ]


>consensus_11204#1 AAAAGGTTTATTCGACATTCACTTTAGGATGACTTTACATTGGAATTCGGGCCTCTTCTT CTTCCACCAGGTTGTTGTACAACTGCTACAAATCGCTTATTGTACTGCATCCTACGCTTA GCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGA ACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACA TCGATAGATGTGTCACTGGACAGAGATGCTAAAGATTGAGAATCACTAATTAATGATCCA CAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTT AGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGAACGGGATCAACCTCGTCCGATTC TG



consensusID : consensus_11204#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 260
fasta sequence
                              [CGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGAAAGCTGTGTCAATGGACAGAGATGACAAAGATTGAGAATCACTGAATTAATGATCACACAATTGTATAAATGCAAACTATGCAGTGGTAGATTGTCCATGTTGGCTAGTAGAATCTGTAGATGGACAGCAGATGGGCAGTCATTGGCGTGTATGACACGGGTATCAGACGACTTAACGAACACCTTCATGTTT]

[-] EMBL CD148092             [CGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGAAAGCTGTGTCAATGGACAGAGATGACAAAGATTGAGAATCACTGAATTAATGATCACACAATTGTATAAATGCAAACTATGCAGTGGTAGATTGTCCATGTTGGCTAGTAGAATCTGTAGATGGACAGCAGATGGGCAGTCATTGGCGTGTATGACACGGGTATCAGACGACTTAACGAACACCTTCATGTTT]


>consensus_11204#2 CGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACG ACATCGAAAGCTGTGTCAATGGACAGAGATGACAAAGATTGAGAATCACTGAATTAATGA TCACACAATTGTATAAATGCAAACTATGCAGTGGTAGATTGTCCATGTTGGCTAGTAGAA TCTGTAGATGGACAGCAGATGGGCAGTCATTGGCGTGTATGACACGGGTATCAGACGACT TAACGAACACCTTCATGTTT



consensusID : consensus_11204#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 218
fasta sequence
                              [ACTGCTTTGCTATGTGCTCGTCTCTGTTGAGGATAGCCGCGACCTGTATAGTGGCCCGCCAGAGATGCATGGACCTTACCTGCTAATGCCGGAACAAAGACATCGACAGATGTGTCACTGGACAGAGATGCTAAAAATTGAAAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTACTAGAAT]

[+] EMBL CD138958             [ACTGCTTTGCTATGTGCTCGTCTCTGTTGAGGATAGCCGCGACCTGTATAGTGGCCCGCCAGAGATGCATGGACCTTACCTGCTAATGCCGGAACAAAGACATCGACAGATGTGTCACTGGACAGAGATGCTAAAAATTGAAAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTACTAGAAT]


>consensus_11204#3 ACTGCTTTGCTATGTGCTCGTCTCTGTTGAGGATAGCCGCGACCTGTATAGTGGCCCGCC AGAGATGCATGGACCTTACCTGCTAATGCCGGAACAAAGACATCGACAGATGTGTCACTG GACAGAGATGCTAAAAATTGAAAATCACTAATTAATGATCCACAGTTGTATAACTGCAAA CTATCCAGTGGTAAATTGTCCTTGTTGGCTACTAGAAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11204#1      ------------------------------------------------------------
consensus_11204#3      ------------------------------------------------------------
consensus_11204#0      TANCGGTTTTTACACACAATTGCAATTATATATAAAGCGTTAAAAGGCTGAAGAGTATAC 60
consensus_11204#2      ------------------------------------------------------------
                                                                                   

consensus_11204#1      ------------------------------------------------------------
consensus_11204#3      ------------------------------------------------------------
consensus_11204#0      CTTAACAACTGACCACAATGGAACTACACAGTATAATCAGATAACATTGTGATACTGTTA 120
consensus_11204#2      ------------------------------------------------------------
                                                                                   

consensus_11204#1      ------------------------------------------------------------
consensus_11204#3      ------------------------------------------------------------
consensus_11204#0      TTAACTGCTTTTACAAACCCACTTAAGAAACAACTCACCACTCCTTCGGAAAAACCATTT 180
consensus_11204#2      ------------------------------------------------------------
                                                                                   

consensus_11204#1      ------------------------------------------------------------
consensus_11204#3      ------------------------------------------------------------
consensus_11204#0      GTCGTTTATAGAATCTAGATTTTGGTGAGGTCCTTTTAACTTCGGGTTTTGATTCCATGA 240
consensus_11204#2      ------------------------------------------------------------
                                                                                   

consensus_11204#1      ------------------------------------------------------------
consensus_11204#3      ------------------------------------------------------------
consensus_11204#0      AATAAACTTTTGGCAGACTAGAGATTACAACTAATGATAGCTGTTTCAATAACGGTGTCA 300
consensus_11204#2      ------------------------------------------------------------
                                                                                   

consensus_11204#1      ------------------------------------------------------------
consensus_11204#3      ------------------------------------------------------------
consensus_11204#0      TTCGACACTGCTGGAATTCAGACAAACAGTACCCGAGATTACAACTTATGAAGATGAACA 360
consensus_11204#2      ------------------------------------------------------------
                                                                                   

consensus_11204#1      ------------------------------------------------------------
consensus_11204#3      ------------------------------------------------------------
consensus_11204#0      GGATATTTTGATAAACTTGTGTTGGGGATGAAAAAACTTGGTACAAGATATAGAAAATAA 420
consensus_11204#2      ------------------------------------------------------------
                                                                                   

consensus_11204#1      --------AAAAGGTTTATTCGACATTCACTTTAGGATGACTTTACATTGGAATTCGGGC 52
consensus_11204#3      ------------------------------------------------------------
consensus_11204#0      CTTCCAACAAAAGGTTTATTCGACATTCACTTTAGGATGACTTTACATTGGAATTCGGGC 480
consensus_11204#2      ------------------------------------------------------------
                                                                                   

consensus_11204#1      CTCTTCTTCTTCCACCAGGTTGTTGTACAACTGCTACAAATCGCTTATTGTACTGCATCC 112
consensus_11204#3      ------------------------------------------------------------
consensus_11204#0      CTCTTCTTCTTCCACCAGGTTGTTGTACAACTGCTACAAATCGCTTATTGTACTGCATCC 540
consensus_11204#2      ------------------------------------------------------------
                                                                                   

consensus_11204#1      TACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTT 172
consensus_11204#3      ------------------------ACTGCTTTGCTATGTGCTCGTC--TCTGTTGAGGAT 34
consensus_11204#0      TACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTT 600
consensus_11204#2      ------------------------------------------------------------
                                                                                   

consensus_11204#1      GCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAA 232
consensus_11204#3      AGCCGCGACCTGTATAGTGGCCCGCCAGAGATGCATGGACCTTACCTGCTAATGCCGGAA 94
consensus_11204#0      GCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAA 660
consensus_11204#2      -----CGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAA 55
                            *** ** **     ** *** ****** ************** ************

consensus_11204#1      CAACGACATCGATAGATGTGTCACTGGACAGAGATGCTAAAGATTGAGAATCACT-AATT 291
consensus_11204#3      CAAAGACATCGACAGATGTGTCACTGGACAGAGATGCTAAAAATTGAAAATCACT-AATT 153
consensus_11204#0      CAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATTGAGAATCACT-AATT 719
consensus_11204#2      CAACGACATCGAAAGCTGTGTCAATGGACAGAGATGACAAAGATTGAGAATCACTGAATT 115
                       *** ******** ** ******* ************  *** ***** ******* ****

consensus_11204#1      AATGATC-CACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAG 350
consensus_11204#3      AATGATC-CACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAC 212
consensus_11204#0      AATGATC-CACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAG 778
consensus_11204#2      AATGATCACACAATTGTATAAATGCAAACTATGCAGTGGTAGATTGTCCATGTTGGCTAG 175
                       ******* **** ******** ********** ******** ******* ********* 

consensus_11204#1      TAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGAACGGGATCAACCT 410
consensus_11204#3      TAGAAT------------------------------------------------------ 218
consensus_11204#0      TAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGACACGGGTATCAAA 838
consensus_11204#2      TAGAATCTGTAGATGGACAGCAGATGGGCAGTCATTGGCGTGTATGACACGGGTATCAGA 235
                       ******                                                      

consensus_11204#1      CGTCCGATTCTG------------------------------------------------ 422
consensus_11204#3      ------------------------------------------------------------
consensus_11204#0      CGACTTAACGAACACCTTCATGTTTCTCAAACAACCTAGTCACGCCAAATTTGTAAACCC 898
consensus_11204#2      CGACTTAACGAACACCTTCATGTTT----------------------------------- 260
                                                                                   

consensus_11204#1      -------
consensus_11204#3      -------
consensus_11204#0      GCAACTA 905
consensus_11204#2      -------
                              




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)