These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11207#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 27 consensus length = 1497 fasta sequence [GACGTATCATTACCACGGAGTAGAGAGGACATTAGGTTGCAACGTTTCATCATGGATCTCTCTGGGAAACTTATTATCAAAGCTCAACTTGGACATGACTTGAGACGCATCCCAATACATAATGAGGAAATTACTTATGATGAACTTATTTTAATGATGCAACGTGTCTTCAAACAGTATATAACAAAGGAAGATGAATTATTGGTAAAATATAAAGACGAAGATGGGGACTTTATAACGATTGAGGATGAGTCTGAGCTCTCTCTCGCCATACAATCCAGCAGGGTGTTACAAATTAAAATCTTCGTTGTTAACAAACCTGAAATATTACAATGTACTGCTCCATTTAAGAGCAGAACAGACGATGAAGCTAAAAAACTCGAATCAGGAGATACGTTATCTTTAGTTTACGAACTTCAACGGCTTGGTAACCACATCCTAAACGTTGCTGA-TCGTATGCAAAAGACGTTTTCTGCCAACAACTCTATGGACATAGCTCTCACTAACTGTAATCGACTTGAGATAGTAAACAAAAGAGACTCAATATGCAACCCGGAGAGTAACAAGGAATTCGATCCGTTATCTAATGTTCGATCTACAGATGTTACAATCTCTTCTCCGAATCCACCCATCTACTTGTCATCAGTCAACAGTTCAGATGACATTTCGAAATCAGAATCTTGTGAAAATTACATGGTTT--CCAAATCAACTTTCTCAACAGCTGGGTCGTTAGATAACGAGGGGCTAAATTCGTCC-AAAAAGTCTGCTGATCATGACCCTATAGATCTCCAAGCTCCTACTACATTTAGTCATTCTAATGCAGAAGCGGTCCCATCGGCAGTGCTTAATAGTAGTTCTACACTCTCCACTACGATACTGCCGTCTCAGGGTCAACCGTTGACACCAAATACTCAGATAATATCATCATTTTATCAACAACCTTCAGGACATCAAAACCATCTTCCCA-CCCAGTCTC-GAGTACAACCCTCAATACCTCTATCCTCT-CAAAACTCAGCACAACCTAAAGTTGATTGCAATGATACTCCTAGGATGCCTAACACATCAACTCCGACGTTACAACAGTATAGTACGCCATCTTTCAGGCCTCCCGGTGTAGCAAACATGCCACCAAATATGGGTCCTTACGCTCGGCAATCTGGAACACAACCAAACACCAATAGACCTATGGGTATGCTTGTAACCCCTCCAAATCCATCATCTAACATGTTTACACCTGTAATTCCACCGTGCGATCCTTCAGCTGGATTAGGGACACCACAGCGTCCAATTATGCCGCCTCTTTCAGGCTCTCCTAGGAATTCTACGACACAAAGTGCAATACAGTCCACACCTATGATTCCACATTTTTGTAATGGTTATCGCATTGTGTATAATTTGGAAGGGTATATCTATCACAGTCTGCCATAATCATCCTTCATTGTAACCACAAACATCGAAATTAAGAGGTTGTGTGTCACAATGAACAAAATAGTTCTG] [+] EMBL AI067328 [GACGTATCATTACCACGGAGTAGAGAGGACATTAGGTTGCAACGTTTCATCATGGATCTCTCTGGGAAACTTATTATCAAAGCTCAACTTGGACATGACTTGAGACGCATCCCAATACATAATGAGGAAATTACTTATGATGAACTTATTTTAATGATGCAACGTGTCTTCAAACAGTATATAACAAAGGAAGATGAATTATTGGTAAAATATAAAGACGAAGATGGGGACTTTATAACGATTGAGGATGAGTCTGAGCTCTCTCTCGCCATACAATCCAGCAGGGTGTTACAAATTAAAATCTTCGTTGTTAACAAACCTGAAATATTACAATGTACTGCTCCATTTAAGAGCAGAACAGACGATGAAGCTAAAGAACTCGA ] [+] EMBL CD149652 [ cagcTGAGACGCGTCCCAATACATAATGAGGAAATTACTTATGATGAACTTATTTTAATGATGCAACGTGTCTTCAAACAGTATATAACAAAGGAAGATGAATTATTGGTAAAATATAAAGACGAAGATGGGGACTTTATAACGATTGAGGATGAGTCTGAGCTCTCTCTCGCCATACAATCCAGCAGGGTGTTACAAATTAAAATCTTCGTTGTTAACAAACCTGAAATATTACAATGTACTGCTCCATTTAAAAACAGAAAAGACGATGAAGCTAAAAAACTCGAATCAGGAGATACGTTATCTTTAGTTTACGAACTTCAACGGCTTGGTAACCACATCCTAAACGTTGCTGA TCGTATGCAAAAGACGTTTTCTGCCAACAACTCTATGGACATAGCTCTCACTAACTGTAATCGACTTGAGATAGTAAACAAAAGAGACTCAATATGCAACCCGGAGAGGTACAAGGAATTCGATCCGTTATCTAATGT ] [+] EMBL CD071590 [ AAACTCGAATCAGGAGATACGTTATCTTTAGTTTACGAACTTCAACGGCTTGGTAACCACATCCTAAACGTTGCTGA TCGTATGCAAAAGACGTTTTCTGCCAACAACTCTATGGACATAGCTCTCACTAACTGTAATCGACTTGAGATAGTAAACAAAAGAGACTCAATATGCAACCCGGAGAGTAACAAGGAATTCGATCCGTTATCTAATGTTCGATCTACAGATGTTACAATCTCTTCTCCGAATCCACCCATCTACTTGTCATCAGTCAACAGTTCAGATGACATTTCGAAATCAGAATCTTGTGAAAATTACATGGTTT CCAAATCAACTTTCTCAACAGCTGGGTCGTTAGATAACGAGGGGCTAAATTCGTCC AAAAAGTCTGCTGATCATGACCCTATAGATCTCCAAGCTCCTACTACATTTAGTCACTCTAATGCAGAAGCGGTCCCATCGGCAGTGCTTAATAGTAGTTCTACACTCTCCACTACGATACTGCCGTCTCAGGGTCAACCGTTGACACCAAATACTCAGATAATATCATCATTTTATCAACAACCTTCAGGACATCAA ] [+] EMBL CD118370 [ CTTTAGTTTACGAACTTCAACGGCTTGGTAACCACATCCTAAACGTTGCTGA TCGTATGCAAAAGACGTTTTCTGCCAACAACTCTATGGACATAGCTCTCACTGACTGTAATCGACTTGAGATAGTAAACAAAAGAGACTCAATATGCAACCCGGAGAGTAACAAGGAATTCGATCCGTTATCTAATGTTCGATCTACAGATGTTACAATCTCTTCTCCGAATCCACCCATCTACTTGTCATCAGTCAACAGTTCAGATGACATTTCGAAATCAGAATCTTGTGAAAATTACATGGTTTTCCCAAATCAACTTTCCCAACAGCTGGGTCGTT ] [-] EMBL CD155577 [ TTTAGTTTACGAACTTCAACGGCTTGGTAACCACATCCTAAACG TGCTGANTCGTATGCAAAAGACGTTTTCTGCCAACAACTCTATGGACATAGCTCTCACTAACTGTAATCGACTTGAGATAGTAAACAAAAGAGACTCAATATGCAACCCGGAGAGTAACAAGGAATCCGATCCGTTATCTAATGTTCGATCTACAGATGTTACAATCTCTTCTCCGAATCCACCCATCTACTCGTCATCAGTCAACAGTTCAGATGACATTTCGAAATCAGAATCTTGTGAAAATTACATGGTTT CCAAATCAACTTTCTCAACAGCTGGGTCGTTAGATAACGAGGGGCTAAATTCGTCC AAAAAGTCTGCTGATCATGACCCTATAGATCTCCAAGCTCCTACTACATTTAGTCATTCTAATGCAGAAGCGGTCCCATCGGCAGTGCTTAATAGTAGTTCTACACTCTCCACTACGATACTGCCGTCTCAGGGTCAACCGTTGACACCAAATACTCAGATAATATCATCATTTTATCAACAACCTTCAGGACATCAAAACCATCTTCCCA CCCAGTCTC GAGTACAACCCTCAATACCTCTATCCTCT CAAAACTCAGCACAACCTAAAGTTGATT ] [-] EMBL CD155612 [ TTTAGTTTACGAACTTCAACGGCTTGGTAACCACATCCTAAACGTTGCTGA TCGTATGCAAAAGACGTTTTCTGCCAACAGCTCTATGGACATAGCTCTCACTAACTGTAATCGACTTGAGATAGTAAACAAAAGAGACTCAATATGCAACCCGGAGAGTAACAAGGAATTCGATCCGTTATCTAATGTTCGATCTACAGATGTTACAATCTCTTCTCCGAATCCACCCATCTACTTGTCATCAGTCAACAGTTCAGATGACATTTCGAAATCAGAATCTTGTGAAAATTACATGGTTT CCAAATCAACTTTCTCAACAGCTGGGTCGTTAGATAACGAGGGGCTAAATTCGTCC AAAAAGTCTGCTGATCATGACCCTATAG ] [-] EMBL CD155696 [ TTTAGTTTACGAACTTCAACGGCTTGGTAACCACATCCTAAACGTTGCTGA TCGTATGCAAAAGACGTTTTCTGCCAACAACTCTATGGACATAGCTCTCACTAACTGTAATCGACTTGAGATAGTAAACAAAAGAGACTCAATATGCAACCCGGAGAGTAACAAGGAATTCGATCCGTTATCTAATGTTCGATCTACAGATGTTACGATCTCTTCTCCGAATCCACCCATCTACTTGTCATCAGTCAACAGTTCAGATGACATTTCGAAATCAGAATCTTGTGAAAATTACATGGTTT CCAAATCAACTTTCTCAACAGCTGGGTCGTTAGATAACGAGGGGCTAAATTCGT ] [-] EMBL CD135877 [ TTTAGTTTACGAACTTCAACGGCTTGGTAACCACATCTTAAACGTTGCTGA CCGTATGCAAAAGACGTTTTCTGCTAACAACTCTATGGACATAGCTCTCACTAACTGTAATCGACTTGAGATAGTAAACAAAAGAGACTCAATATGCAACCCGGAGAGTAACAAGGAATTCGATCCGTTATATAATGTTCGATCTACAGATGTTACAATCTCTTCTacata ] [-] EMBL CD155583 [ TTTAGTTTACGAACTTCAACGGCTTGGTAACCACATCCTAAACGTTGCTGA TCGTATGCAAAAGACGTTTTCTGCCAACAACTCTATGGACATAGCTCTCACTAACTGTAATCGACTTCAGATAGTAAACAAAAG ] [-] EMBL CD155615 [ TTTAGTTTACGAACTTCAACGGCTTGGTAACCACATCCTAAACGTTGCTGA TCGTATGCAAAAGACGTTTTCTGCCAACAGCTCTATGGACATAGCTCTCACTAACTGTAATCGACTTGAGATAGTAAACAAAAGAGACTCAATATGCAACCCGGAGAGTAACAAGGAATTCGATCCGTTATCTAATGTTCGATCTACAGATGTTACAATCTCTTCTCCGAATCCACCCATCTACTTGTCATCAGTCAACAGTTCAGATGACATTTCGAAATCAGAATCTTGTGAAAATTACATGGTTT CCAAATCAACTTTCTCAACAGCTGGGTCGTTAGATAACGAGGGGCTAAATTCGTCC AAAAAGTCTGCTGATCATGACCCTATAG ] [-] EMBL CD155631 [ TTTAGTTTACGAACTTCAACGGCTTGGTAACCACATCCTAAACGTTGCTGA TCGTATGCAAAAGACGTTTTCTGCCAACAGCTCTATGGACATAGCTCTCACTAACTGTAATCGACTTGAGATAGTAAACAAAAGAGACTCAATATGCAACCCGGAGAGTAACAAGGAATTCGATCCGTTATCTAATGTTCGATCTACAGATGTTACAATCTCTTCTCCGAATCCACCCATCTACTTGTCATCAGTCAACAGTTCAGATGACATTTCGAAATCAGAATCTTGTGAAAATTACATGGTTT CCAAATCAACTTTCTCAACAGCTGGGTCGTTAGATAACGAGGGGCTAAATTCGTCC AAAAAGTCTGCTGATCATGACCCTATAG ] [-] EMBL CD155582 [ TTTAGTTTACGAACTTCAACGGCTTGGTAACCACATCCTAAACGTTGCTGA TCGTATGCAAAAGACGTTTTCTGCCAACAACTCTATGGACATAGCTCTCACTAACTGTAATCGACTTGAGATAGTAAACAAAAGAGACTCAATATGCAACCCGGAGAGTAACAAGGAATTCGATCCGTTATCTAATGTTCGATCTACAGATGTTACAATCTCTTCTCCGAATCCACCCATCTACTTGTCATCAGTCAACAGTTCAGATGACATTTCGAAATCAGAATCTTGTGAAAATTACATGGTTT CCAAATCAACTTTCTCAACAGCTGGGTCGTTAGATAACGAGGGGCTAAATTCGTCC AAAAAGTCTGCTGATCATGACCCTATAG ] [-] EMBL CD155611 [ TTTAGTTTACGAACTTCAACGGCTTGGTAACCACATCCTAAACGTTGCTGA TCGTATGCAAAAGACGTTTTCTGCCAACAACTCTATGGACATAGCTCTCACTAACTGTAATCGACTTGAGATAGTAAACAAAAGAGACTCAATATGCAACCCGGAGAGTAACAAGGAATTCGATCCGTTATCTAATGTTCGATCTACAGATGTTACAATCTCTTCTCCGAATCCACCCATCTACTTGTCATCAGTCAACAGTTCAGATGACATTTCGAAATCAGAATCTTGTGAAAATTACATGGTTT CCAAATCAACTTTCTCAACAGCTGGGTCGTTAGATAACGAGGGGCTAAATTCGTCC AAAAAGTCTGCTGATCATGACCCTATAG ] [-] EMBL CD135821 [ cgCTGTAATCGACTTGAGATAGTAAACAAAAGAGACTCAATATGCAACCCGGAGAGTAACAAGGAATTCGATCCGTTATGTAATGTTCGATCTACAGATGTTACAATCTCTTCTCCGAATCCACCCATTTACTTGTCATCAGTCAACA TTCGGATGc ] [+] EMBL CD148155 [ GAGACTCAATATGCAACCCGGAGAGTAACAAGGAATTCGATCCGTTATCTAATGTTCGATCTACAGATGTTCCAATCTCTTCTCCGAATCCACCCATCTACTTGTCATCAGTCAACAGTTCAGATGACATTTCGAAATCAGAATCTTGTGAAAATTACATGGTTT CCAAATCAACTTTCTCAACAGCTGGGTCGTTAGATAACGAGGGGCTAAATTCGTCC AAAAAGTCTGCTGATCATGACC ] [-] EMBL CD155601 [ GACTCAATATGCAACCCGGAGAGTAACAAGGAATCCGATCCGTTATCTAATGTTCGATCTACAGATGTTACAATCTCTTCTCCGAATCCACCCATCTACTCGTCATCAGTCAACAGTTCAGATGACATTTCGAAATCAGAATCTTGTGAAAATTACATGGTTT CCAAATCAACTTTCTCAACAGCTGGGTCGTTAGATAACGAGGGGCTAAATTCGTCC AAAAAGTCTGCTGATCATGACCCTATAGATCTCCAAGCTCCTACTACATTTAGTCATTCTAATGCAGAAGCGGTCCCATCGGCAGTGCTTAATAGTAGTTCTACACTCTCCACTACGATACTGCCGTCTCAGGGTCACCCGTTGACACCAAATACTCAGATAATATCATCATTTTATCAACAACCTTCAGGACATCAAAACCATCTTCCCA CCCAGTCTC GAGTACAACCCTCAATACCTCTATCCTCT CAAAACTCAGCACAACCTAAAGTTGATT ] [-] EMBL CD201155 [ AATTCGATCCGTTATCTAATGTTCGATCTACAGATGTTACAATCTCTTCTCCGAATCCACCCATCTACTTGTCATCAGTCAACAGTTCAGATGACATTTCGAAATCAGAATCTTGTGAAAATTACATGGTTT CCAAATCAACTTTCTCAACAGCTGGGTCGTTAGATAACGAGGGGCTAAATTCGTCCAAAAAAGTCTGCTGATCATGACCCTATAG ] [-] EMBL CD113145 [ GATGACATTTCGAAATCAGAATCTTGTGAAAATTACATGGTTT CCAAATCAACTTTCTCAACAGCTGGGTCGTTAGATAACGAGGGGCTAAATTCGTCC AAAAAGTCTGCTGATCATGAC ] [-] EMBL CD155769 [ AAATCAACTTTCTCAACAGCTGGGTCGTTAGATAACGAGGGGCTAAATTCGTCC ANAAAGTCTGCTGATCATGACCCTATAG ] [+] EMBL CD197857 [ GATCTCCAAGCTCCTACTACATTTAGTCATTCTAATGCAGAAGCGGTCCCATCGGCAGTGCTGAGTAGTAGTTCTACACTCTCCACTACGATACTGCCGTCTCAGGGTCAACCGTTGACACCAAATACTCAGATAATATCATCATTTTATCAACAACCTTCAGGACATCAAAACCATCTTCCCA CCCAGTCTC GAGTACAACCCTCAATACCTCTATCCTCT CAAAACTCAGCACAACCTATAGTTGATTGCAATGATACTCCTAGGATGCCTAACACATCAACTCCGACGTTACAACAGTATAGTACGCCATCTTTCAGGCCTCCCGGTGTAGCAAACATGCCACCAAATATGGGTCCTTACGCTCGGCAATCTGGAACACAACCAAACACCAATAGACCTATGGGTATGCTTGTAACCCCTCCAAATCCATCATCTAACATG ] [+] EMBL CD197716 [ GATCTCCAAGCTCCTACTACATTTAGTCATTCTAATGCAGAAGCGGTCCCATCGGCAGCGCTTAATAGTAGTTCTACACTCTCCACTACGATACTGCCGTCTCAGGGTCAACCGTTGACACCAAATACTCAGATAATATCATCATTTTATCAACAACCTTCAGGACATCAAAACCATCTTCCCA CCCAGTCTC GAGTACAACCCTCAATACCTCTATCCTCT CAAAACTCAGCACAACCTAAAGTTGATTGCAATGATACTCCTAGGATGCCTAACACATCAACTCCGACGTTACAACAGTATAGTACGCCATCTTTCAGGCCTCCCGGTGTAGCAAACATGCCACCCAATATTGGTCCTTACGCTCGGCAATCTGGAACACAACCCAACACCCATA ] [+] EMBL BG931106 [ aTCAACCGTTGACACCAAATACTCAGATAATATCATCATTTTATCAACAACCTTCAGGACATCAAAACCATCTTCCCA CCCAGTCTC GAGTACAACCCTCAATACCTCTATCCTCT CAAAACTCAGCACAACCTAAAGTTGATTGCAATGATACTCCTAGGATGCCTAACACATCAACTCCGACGTTACAACAGTATAGTACGCCATCTTTCAGGCCTCCCGGTGTAGCAAACATGCCACCAAATATGGGTCCTTACGCTCGGCAATCTGGAACACAACCAAACACCAATAGACCTATGGGTATGCTTGTg ] [-] EMBL CD197726 [ TCCCACCCCAGTCTCGGAGTACAACCCTCAATACCTCTATCCTTTCCAAAACTCAGCACAACCTAAAGTTGATTGCAGTGATACTCCTAGGATGCCTAACACATCAACTCCGACGTTACAACAGTATAGTACGCCATCTTTCAGGCCTCCCGGTGTAGCAAACATGCCACCANATATGGGTCCTTACGCTCGGCGATCTGGAACACAACCAAACACCAATAGACCTATGGGTATGCTTGTAACCCCTCCAAATCCATCATCTAACATGTTTACACCTGTAATTCCACCGTGCGATCCTTCAGCTGGATTAGGGACACCACAGCGTCCAATTATGCCGCCTCTTTCAGGCTCTCCTAGGAATTCTACGACACAAAGTGCAATACAG ] [-] EMBL CD180896 [ AACCCTCAATACCTCTATCCTCT CAAAACTCAGCACAACCTAAAGTTGATTGCAATGATACTCCTAGGATGCCTAACACATCAACTCCGACGTTCCAACAGTATAGTACGCCATCTTTCAGGCCTCCCGGTGTAGCAAACATGCCACCAAATATGGGTCCTTTCGCTCGGCAATCTGGAACACAACCAAACACCAATAGACCTATGGGTATGCTTGTAACCCCTCCAAATCCATCATCTAACATGTTTACACCTGTAATTCCACCGTGCG ] [-] EMBL CD069013 [ TGATTGCAATGATACTCTTAGGATGCCTAACACATCAACTCTGACGTTACAACAGTATAGTACGCCATCTTTCAGGCCTCCCGGTGTAGCAAACATGCCACCAAATATGGGTCCTTACGCTCGGCAATCTGGAACACAACCAAACACCAATAGACCTATGGGTATGCTTGTAACCCCTCCAAATCCATCATCTAACATGTTTACACCT ] [-] EMBL CD060730 [ CGCCATCTTTCAGGCCTCCCGGTGTAGCAAACATGCCACCAAATATGGGTCCTTACGCTCGGCAATTTGGAACGCAACCAAACACCAATAGACCTATGGGTATGCTTGTAACCCCTCCAAATCCATCATCTAACATGTTTACACCTGTAATTCCACCCTGCGA ] [+] EMBL CD119284 [ CTTTCAGGCCTCCCGGTGTAGCAAACATGCCACCAAATATGGGTCCTTACGCTCGGCAATCTGGAACACAACCAAACACCAATAGACCTATGGGTATGCTTGTAACCCCTCCAAATCCATCATCTAACATGTTTACACCTGTAATTCCACCGTGCGATCCTTCAGCTGGATTAGGGACACCACAGCGTCCAATTATGCCGCCTCTTTCAGGCTCTCCTAGGAATTCTACGACACAAAGTGCAATACAGTCCACACCTATGATTCCACATTTTTGTAATGGTTATCGCATTGTGTATAATTTGGAAGGGTATATCTATCACAGTCTGCCATAATCATCCTTCATTGTAACCACAAACATCGAAATTAAGAGGTTGTGTGTCACAATGAACAAAATAGTTCTG] consensusID : consensus_11207#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 618 fasta sequence [GCCACCAAATATGGGTCCTTACGCTCGGCAATCTGGAACACAACCAAACACCAATAGACCTATGGGTATGCTTGTAACCCCTCCAAATCCATCATCTAACATGTTTACACCTGTAATTCCACCGTGCGATCCTTCAGCTGGATTAGGGACACCACAGCGTCCAATTATGCCGCCTCTTTCAGGCTCTCCTAGGAATTCTACGACACAAAGTGCAATACAGTCCACACCTATGATTCCACATGGCATGTCATATCCACCTATGTATCCNCCTCCAGCTCAAAGTATGGATTCTTCGACACGTCCCATGTGTCCTCCAATTCAAAATACTTTTGTATCGGGTTCCTACAATTCAATGCATTCTAGTGCTGCCCTTCCTGTAACATCACTAAACACTATCTTATCAAAAGCAAGCCCGGCTCCTAATGAGACTCATTATTACACCCCATCCTATCCTAATTATCAATAATGATGCCTTATTTTTACTCCAAGGTGCTTATTGTTTAAGCTGGCCTGTCATTCGATAGCTTCACATCGTGA-TGTGACATACAGTTATTTAGAATTTCCTAAATTTCAGCATATTTTGCGTTAAGTGCACAATGTCGGATTCGGGGATCCTCT] [+] EMBL CD070487 [GCCACCAAATATGGGTCCTTACGCTCGGCAATCTGGAACACAACCAAACACCAATAGACCTATGGGTATGCTTGTAACCCCTCCAAATCCATCATCTAACATGTTTACACCTGTAATTCCACCGTGCGATCCTTCAGCTGGATTAGGGACACCACAGCGTCCAATTATGCCGCCTCTTTCAGGCTCTCCTAGGAATTCTACGACACAAAGTGCAATACAGTCCACACCTATGATTCCACATGGCATGTCATATCCACCTATGTATCCNCCTCCAGCTCAAAGTATGGATTCTTCGACACG ] [-] EMBL CD143511 [ CCACCAAATATGGGTCCTTACGCTCGGCAATTTGGTACACAACCAAACACCAATAGACTTATGGGTATGCTTGTAACCCCTCCAAATCCATCATTTAACATGTTTACACCTGTAATTCCACCGTGCGATCCTTCAGCTGGATTAGGGACACCACAGCGTCCAATTATGCCGCATCTTTCAGGCTCCCCTAGG ] [-] EMBL CD154693 [ TTACACCTGTAATTCCACCGTGCGATCCTTCAGCTGGATTAGGGACACCACAGCGTCCAATTATGCCGCCTCTTTCAGGCTCTCCTAGGAATTCTACGACACAAAGTGCAATACAGTCCACACCTATGATTCCACATGGCATGTCATA ] [+] EMBL CD061289 [ TACAGTCCACACCTATGATTCCACATGGCATGTCATATCCACCTATGTATCC CCTCCAGCTCAAAGTATGGATTCTTCGACACGTCCCATGTGTCCTCCAATTCAAAATACTTTTGTATCGGGTTCCTACAATTCAATGCATTCTAGTGCTGCCCTTCCTGTAACATCACTAAACACTATCTTATCAAAAGCAAGCCCGGCTCCTAATGAGACTCATTATTACACCCCATCCTATCCTAATTATCAATAATGATGCCTTATTTTTACTCCAAGGTGCTTATTGTACAAGCTGGCCTGTCATTCGATAGCTTCACATCGTGA TGTGACATACAGTTATTTAGAATTACCTAAATTTCAGCATATT ] [-] EMBL CD061217 [ CACCTATGATTCCACATGGCATGTCATATCCACCTATGTATCCCCCTCCAGCTCAAAGTATGGATTCTTCGACACGTCCCATGTGTCCTCCAATTCAAAATACTTTTGTATCGGGTTCCTACAATTCAATGCATTCTAGTGCTGCCCTTCCTGTAACATCACTAAACACTATCTTATCAAAAGCAAGCCCGGCTCCTAATGAGACTCATTATTACACCCCATCCTATCCTAATTATCAATAATGATGCCTTATTTTTACTCCAAGGTGCTTATTGTTTAAGCTGGCCTGTCATTCGATAGCTTCACATCGTGA TGTGACATACAGTTATTTAGAATTTCCTAAATTTCAGCATATTTTGCGTTAAGTGCACAATGTCGGATTCGGGGATCCTCT] [+] EMBL AW063009 [ CCTCCAATTCAAAATACTTTTGTATCGGGTTCCTACAATTCAATGCATTCTAGTGCTGCCCTTCCTGTAACATCACTAAACACTATCTTATCAAAAGCAAGCCCGG TCCTAATGAGATTC TTATTAAAACCC TTCTATACT ATTATC ATAATGATGCCTTATTTTTACTCCAAGGTGCTTATTGTTTAAGCTGG CTGTCATTCGATAGCTTCACATCGTGATTGTGACATAAAGTTATTTAGAATTTCCTAAATTTCc ] consensusID : consensus_11207#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 553 fasta sequence [TTCGATAGCTTCACATCGTGATGTGACATACAGTTATTTAGAATTTCCTAAATTTCAGCATATTTTGCGTTAAGTGCACACGCAAATTGATTACTTTGGTTTATGGTTACATAAAATTTTGATTATAAACCCCTTAAAATGATATTTTGAATTCAATTTCTTTTACACTTGGTTTCTTATCAATTTTGGTCAGTAATATGTATTAATCATGTTTTGTGGTTTTATTTCATCTTTTACTGCAGTTTTGTAATGGTTATCGCATTGTGTATAATTTGGAAGGGTATATCTATCACAGTCTGCCATAATCATCCTTCATTGTAACCACAAACATCGAAATTAAGAGG-TTGTGTGTCACAATG-AACAAAATAGTTCTGCGATTTCTGGG--ATGTNTGTT-AGAAAATCTTTTTATTGTACTGGGATTTAAACTTCAGTAGTTAAACNATATATTTGAAAATACACTGTATTCCTCGTAAAACTATAAGAAAATCAAATGTCTCGTGTTTTGCAAATATTTCTTAGTAGTTCTATAACTCTTAAGTTGGGAGTGTCTATA] [+] EMBL AI111114 [TTCGATAGCTTCACATCGTGATGTGACATACAGTTATTTAGAATTTCCTAAATTTCAGCATATTTTGCGTTAAGTGCACACGCAAATTGATTACTTTGGTTTATGGTTACATAAAATTTTGATTATAAACCCCTTAAAATGATATTTTGAATTCAATTTCTTTTACACTTGGTTTCTTATCAATTTTGGTCAGTAATATGTATTAATCATGTTTTGTGGTTTTATTTCATCTTTTACTGCAGTTTTGTAATGGTTATCGCATTGTGTATAATTTGGAAGGGTATATCTATCACAGTCTGCCATAATCATCCTTCATTGTAACCACAAACATCGAAATTAANAGG TTGTGTGTCACAATGAAACAAAATAGTTCTGCNATTTCTGGG ATGTATGTT AGAAAATCTTTTTATTGTACTGGGATTTAAACTTCAGTAGTTAAACNATATATTTGAAAATACACTGTATTCCTCGTAAAACTATAAGAAAATCAAATGTCTCGTGTTTTGCAAATATTTCTTAGTAGTTCTATAACTCTTAAGTTGGGAGTGTCTATA] [+] EMBL AI111038 [TTCGATAGCTTCACATCGTGATGTGACATACAGTTATTTAGAATTTCCTAAATTTCAGCATATTTTGCGTTAAGTGCACACGCAAATTGATTACTTTGGTTTATGGTTACATAAAATTTTGATTATAAACCCCTTAAAATGATATTTTGAATTCAATTTCTTTTACACTTGGTTTCTTATCAATTTTGGTCAGTAATATGTATTAATCATGTTTTGTGGTTTTATTTCATCTTTTACTGCAGTTTTGTAATGGTTATCGCATTGTGTATAATTTGGAAGGGTATATCTATCACAGTCTGCCATAATCATCCTTCATTGTAACCACAAACATCGAAATTAAGAGGTTTGTGTGTCACAATG AACAAAATAGTTCTGCGATTTCTGGGGAATGTNTGTTAAGAAAATCTTTTTATTGTACTGGGATTTAAACTTCAGTta ] [+] EMBL AI111080 [TTCGATAGCTTCACATCGTGATGTGACATACAGTTATTTAGAATTTCCTAAATTTCAGCATATTTTGCGTTAAGTGCACACNCAAATTGATTACTTTGGTTTATGGTTACATAAAATTTTGATTATAAACCCCTTAAAATGATATTTTGAATTCAATTTCTTTTACACTTGGTTTCTTATCAATTTTGGTCAGTAATATGTATTAATCATGTTTTGTGGTTTTATTTCATCTTTTACTGCAGTTTTGTAATGGTTATCGCATTGTGTATAATTTGGAAGGGTNTATCTATCACAGTCTGCCATAATCATCCTTCATTGTTACCCCAAACA ] [-] EMBL CD118184 [ CACACGCAGATTGATTACTTTGGTTTATGGTTACATAAAATTTTGATTATAAACCCCTTAAAATGATATTTTGAATTCAATTTCTTTTACACTTGGTTTCTTATCAATTTTGGTCAGTAATATGTATTAATCATGTTTTGTGGTTTTATTTCATCTTTTACTGCAGTTTTGTAATGGTTATCGCATTGTGTATAATTTGGAAGGGTATATCTATCACAGTCTGCCATAATCATCCTTCATTGTAACCACAAACATCGAAATTAAGAGG TTGTGTGTCACAATG AACAAAATAGTTCTGCGATTCCTGGG ATGTGTGTT AGAAAATCTTTTTATTGTACTGGGATTTAAACTTCAGTAGTTAAACGATATATTTGAAAATACACTATATTCCTCGTAAAACTATAAG AAATCAAATGTCTCGTGTTTTGCAGATATTTCTTAGTAGTTCTA ] consensusID : consensus_11207#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 362 fasta sequence [TTTTTTTTTTTTTTTTTTAAAACCACAAAACATGATTAATACATATTACTGACCAAAATTGATAAGAAACCAAGTGTAAAAGAAATTGAATTCAAAATATCATTTTAAGGGGTTTATAATCAAAATTTTATGTAACCATAAACCAAAGTAATCAATCTGCGTGTGCACTTAACGCAAAATATGCTGAAATTTAGGAAATTCTAAATAACTGTATGTCACATCACGATGTGAAGCTATCGAATGACAGGCCAGCTTAAACAATAAGCACCTTGGAGTAAAAATAAGGCATCATTATTGATAATTAGGATAGATGGGGTGTAAAAATGGGGTCCTCATTAGGAGCCGGGCTTGCTTTCTGAAAG] [+] EMBL AI395069 [TTTTTTTTTTTTTTTTTTAAAACCACAAAACATGATTAATACATATTACTGACCAAAATTGATAAGAAACCAAGTGTAAAAGAAATTGAATTCAAAATATCATTTTAAGGGGTTTATAATCAAAATTTTATGTAACCATAAACCAAAGTAATCAATCTGCGTGTGCACTTAACGCAAAATATGCTGAAATTTAGGAAATTCTAAATAACTGTATGTCACATCACGATGTGAAGCTATCGAATGACAGGCCAGCTTAAACAATAAGCACCTTGGAGTAAAAATAAGGCATCATTATTGATAATTAGGATAGATGGGGTGTAAAAATGGGGTCCTCATTAGGAGCCGGGCTTGCTTTCTGAAAG] [+] EMBL AI395105 [TTTTTTTTTTTTTTTTTTAAAACCACAAAACATGATTAATACATATTACTGACCAAAATTGATAAGAAACCAAGTGTAAAAGAAATTGAATTCAAAATATCATTTTAAGGGGTTTATAATCAAAATTTTATGTAACCATAAACCAAAGTAATCAATCTGCGTGTGCACTTAACGCAAAATATGCTGAAATTTAGGAAATTCTAAATAACTGTATGTCACATCACGATGTGAAGCTATCGAATGACAGGCCAGCTTAAACAATAAGCACCTTGGAGTAAAAATAAGGCATCATTANTGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11207#0 GACGTATCATTACCACGGAGTAGAGAGGACATTAGGTTGCAACGTTTCATCATGGATCTC 60 consensus_11207#1 ------------------------------------------------------------ consensus_11207#2 ------------------------------------------------------------ consensus_11207#3 ------------------------------------------------------------ consensus_11207#0 TCTGGGAAACTTATTATCAAAGCTCAACTTGGACATGACTTGAGACGCATCCCAATACAT 120 consensus_11207#1 ------------------------------------------------------------ consensus_11207#2 ------------------------------------------------------------ consensus_11207#3 ------------------------------------------------------------ consensus_11207#0 AATGAGGAAATTACTTATGATGAACTTATTTTAATGATGCAACGTGTCTTCAAACAGTAT 180 consensus_11207#1 ------------------------------------------------------------ consensus_11207#2 ------------------------------------------------------------ consensus_11207#3 ------------------------------------------------------------ consensus_11207#0 ATAACAAAGGAAGATGAATTATTGGTAAAATATAAAGACGAAGATGGGGACTTTATAACG 240 consensus_11207#1 ------------------------------------------------------------ consensus_11207#2 ------------------------------------------------------------ consensus_11207#3 ------------------------------------------------------------ consensus_11207#0 ATTGAGGATGAGTCTGAGCTCTCTCTCGCCATACAATCCAGCAGGGTGTTACAAATTAAA 300 consensus_11207#1 ------------------------------------------------------------ consensus_11207#2 ------------------------------------------------------------ consensus_11207#3 ------------------------------------------------------------ consensus_11207#0 ATCTTCGTTGTTAACAAACCTGAAATATTACAATGTACTGCTCCATTTAAGAGCAGAACA 360 consensus_11207#1 ------------------------------------------------------------ consensus_11207#2 ------------------------------------------------------------ consensus_11207#3 ------------------------------------------------------------ consensus_11207#0 GACGATGAAGCTAAAAAACTCGAATCAGGAGATACGTTATCTTTAGTTTACGAACTTCAA 420 consensus_11207#1 ------------------------------------------------------------ consensus_11207#2 ------------------------------------------------------------ consensus_11207#3 ------------------------------------------------------------ consensus_11207#0 CGGCTTGGTAACCACATCCTAAACGTTGCTGATCGTATGCAAAAGACGTTTTCTGCCAAC 480 consensus_11207#1 ------------------------------------------------------------ consensus_11207#2 ------------------------------------------------------------ consensus_11207#3 ------------------------------------------------------------ consensus_11207#0 AACTCTATGGACATAGCTCTCACTAACTGTAATCGACTTGAGATAGTAAACAAAAGAGAC 540 consensus_11207#1 ------------------------------------------------------------ consensus_11207#2 ------------------------------------------------------------ consensus_11207#3 ------------------------------------------------------------ consensus_11207#0 TCAATATGCAACCCGGAGAGTAACAAGGAATTCGATCCGTTATCTAATGTTCGATCTACA 600 consensus_11207#1 ------------------------------------------------------------ consensus_11207#2 ------------------------------------------------------------ consensus_11207#3 ------------------------------------------------------------ consensus_11207#0 GATGTTACAATCTCTTCTCCGAATCCACCCATCTACTTGTCATCAGTCAACAGTTCAGAT 660 consensus_11207#1 ------------------------------------------------------------ consensus_11207#2 ------------------------------------------------------------ consensus_11207#3 ------------------------------------------------------------ consensus_11207#0 GACATTTCGAAATCAGAATCTTGTGAAAATTACATGGTTTCCAAATCAACTTTCTCAACA 720 consensus_11207#1 ------------------------------------------------------------ consensus_11207#2 ------------------------------------------------------------ consensus_11207#3 ------------------------------------------------------------ consensus_11207#0 GCTGGGTCGTTAGATAACGAGGGGCTAAATTCGTCCAAAAAGTCTGCTGATCATGACCCT 780 consensus_11207#1 ----------------------------------------------------GCCACCAA 8 consensus_11207#2 ------------------------------------------------------------ consensus_11207#3 ------------------------------------------------------------ consensus_11207#0 ATAGATCTCCAAGCTCCTACTACATTTAGTCATTCTAATGCAGAAGCGGTCCCATCGGCA 840 consensus_11207#1 ATATGGGTCCTTACGCTCGGCAATCTGGAACACAACCAAACACCAATAGACCTATGGGTA 68 consensus_11207#2 --------------------------------------TTCGATAGCTTCACATCGTGAT 22 consensus_11207#3 ------------------------------------------------------------ consensus_11207#0 GTGCTTAATAGTAGTTCTACACTCTCCA-CTACGATACTGCCGT-CTCAGGGTCAACCGT 898 consensus_11207#1 -TGCTTG-TAACCCCTCCAAATCCATCATCTAACATGTTTACAC-CTGTAATTCCACCGT 125 consensus_11207#2 GTGACATACAGTTATTTAGAATTTCCTA-----AATTTCAGCATATTTTGCGTTAAGTGC 77 consensus_11207#3 ------------------------------------------------------------ consensus_11207#0 TGACACCAAATACTCAGATAATATCATCATTTTATCAACAACCTTCAGGACATCAAAACC 958 consensus_11207#1 GCGATCCTTCAGCTGGATTAGGGACACCACAGCGTCCAATTATGCCGCCTCTTTCAGGCT 185 consensus_11207#2 ACACGCAAATTGATTACTTTGGTTTATGGTTACATAAAATTTT-----GATTATAAACCC 132 consensus_11207#3 ----------------------------TTTTTTTTTTTTTTTTTTAAAACCACAAAACA 32 * * * consensus_11207#0 ATCTTCCCACCCAGTCTCGAGTACAACCCTCAATACCTCTATCCTCTCAAAACTCAGCAC 1018 consensus_11207#1 ---CTCCTAGGAATTCTACGACACAAAGTGCAATACAGTC-CACACCTATGATTCCACAT 241 consensus_11207#2 --CTTAAAATGATATTTTGAATTCAATTTCTTTTACACTTGGTTTCTTATCAATTT---T 187 consensus_11207#3 TGATTAATACATATTACTGACCAAAATTGATAAGAAACCAAGTGTAAAAGAAATTG---- 88 * * * ** * * * * consensus_11207#0 AACCTAAAGTTGATTGCAATGATACTCCTAGGATGCCTAACACATCAACTCCGACGTTAC 1078 consensus_11207#1 GGCATGTCATATCCACCTATG-TATCCNCCTCCAGCTCAAAGTATGGATTCTT-CGACAC 299 consensus_11207#2 GGTCAGTAATATGTATTAATCATGTTTT---GTGGTTT--TATTTCATCTTTTACTGCAG 242 consensus_11207#3 AATTCAAAATATCATTTTAAGGGGTTTA-----TAATCAAAATTTTA--TGTAACCATAA 141 * * * * * * consensus_11207#0 AACAGTATAGTACGCCATCTTTCAGGCCTCCCGGTGTAGCAAACATGCCACCAAATATGG 1138 consensus_11207#1 GTCCCATGTGTCCTCCAA-TTCAAAATACTTTTGTATCGGGTTCCTACAATTCAATGCA- 357 consensus_11207#2 TTTTGTAATGGTTATCGCATTGTGTATAATTTGGAAGGGTATATCTATCAC--AGTCTG- 299 consensus_11207#3 ACCAAAGTAATCAATCTGCGTGTGCAC-TTAACGCAAAATATGC-TGAAATTTAGGAAA- 198 * * * * * * consensus_11207#0 GTCCTTACGCTCGGCAATCTGGAACACAACCAAACACCAATAGACCTATGGGTATGCTTG 1198 consensus_11207#1 -TTCTAGTGCTGCCCTTCCTGTAACATCACTAAACACTATCTTATC-AAAAGCAAGCCCG 415 consensus_11207#2 -CCATAAT------CATCCTTCATTGTAACCACAAAC-ATCGAAATTAAGAGGTTGTGTG 351 consensus_11207#3 -TTCTAAATAACTGTATGTCACATCACGATGTGAAGCTATCGAATG-ACAGGCCAGCTTA 256 * * * * * * * * * * consensus_11207#0 TAACCCCTCCAAATCCATCATCTAACATGTTTACACCTGTAATTCCACCGTGCGATCCTT 1258 consensus_11207#1 GCTCCTAATGAGACTCATTATTACACCCCATCCTATCC-TAATTATCAATAATGATGCCT 474 consensus_11207#2 TCAC--AATGAACAAAATAGTTCTGCGATTTCTGGGAT----GTNTGTTAGAAAATCTTT 405 consensus_11207#3 -AAC--AATAAGCACCTTGGAGTAAAAATAAGGCATCATTATTGATAATTAGGATAGATG 313 * * * consensus_11207#0 CAGCTGGATTAGGGACACCACAGCGTCCAATTATGCCGCCTCTTTCAGGCTCTCCTAGGA 1318 consensus_11207#1 TATTTTTACTCCAAGGTGCTTATTGTTTAAGC-TGGCCTGTCATTCGATAGCTTCACATC 533 consensus_11207#2 TTATTGTACTGGGATTTAAACTTCAGT-AGTTAAACNATATATTTGAAAATACACTGTAT 464 consensus_11207#3 GGGTGTAAAAATGGGGTCCTCATTAGG-AGCCGGGCTTGCTTTCTGAAAG---------- 362 * * * * consensus_11207#0 ATTCTACGACAC-AAAGTGCAATACAGTCCACACCTATGATTCCACATTTTTGTAATGGT 1377 consensus_11207#1 GTGATGTGACAT-ACAGTTATTTAGAATTT---CCTAAATTTCAGCATATTTT--GCGTT 587 consensus_11207#2 TCCTCGTAAAACTATAAGAAAATCAAATGT----CTCGTGTTTTGCAAATATTTCTTAGT 520 consensus_11207#3 ------------------------------------------------------------ consensus_11207#0 TATCGCATTGTGTATAATTTGGAAGGGTATATCTATCACAGTCTGCCATAATCATCCTTC 1437 consensus_11207#1 AAGTGCACAATGTCGGATTCGG---GGATCCTCT-------------------------- 618 consensus_11207#2 AGTTCTATAACTCTTAAGTTGG--GAGTGTCTATA------------------------- 553 consensus_11207#3 ------------------------------------------------------------ consensus_11207#0 ATTGTAACCACAAACATCGAAATTAAGAGGTTGTGTGTCACAATGAACAAAATAGTTCTG 1497 consensus_11207#1 ------------------------------------------------------------ consensus_11207#2 ------------------------------------------------------------ consensus_11207#3 ------------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||