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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11207#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 27 consensus length = 1497 fasta sequence
[GACGTATCATTACCACGGAGTAGAGAGGACATTAGGTTGCAACGTTTCATCATGGATCTCTCTGGGAAACTTATTATCAAAGCTCAACTTGGACATGACTTGAGACGCATCCCAATACATAATGAGGAAATTACTTATGATGAACTTATTTTAATGATGCAACGTGTCTTCAAACAGTATATAACAAAGGAAGATGAATTATTGGTAAAATATAAAGACGAAGATGGGGACTTTATAACGATTGAGGATGAGTCTGAGCTCTCTCTCGCCATACAATCCAGCAGGGTGTTACAAATTAAAATCTTCGTTGTTAACAAACCTGAAATATTACAATGTACTGCTCCATTTAAGAGCAGAACAGACGATGAAGCTAAAAAACTCGAATCAGGAGATACGTTATCTTTAGTTTACGAACTTCAACGGCTTGGTAACCACATCCTAAACGTTGCTGA-TCGTATGCAAAAGACGTTTTCTGCCAACAACTCTATGGACATAGCTCTCACTAACTGTAATCGACTTGAGATAGTAAACAAAAGAGACTCAATATGCAACCCGGAGAGTAACAAGGAATTCGATCCGTTATCTAATGTTCGATCTACAGATGTTACAATCTCTTCTCCGAATCCACCCATCTACTTGTCATCAGTCAACAGTTCAGATGACATTTCGAAATCAGAATCTTGTGAAAATTACATGGTTT--CCAAATCAACTTTCTCAACAGCTGGGTCGTTAGATAACGAGGGGCTAAATTCGTCC-AAAAAGTCTGCTGATCATGACCCTATAGATCTCCAAGCTCCTACTACATTTAGTCATTCTAATGCAGAAGCGGTCCCATCGGCAGTGCTTAATAGTAGTTCTACACTCTCCACTACGATACTGCCGTCTCAGGGTCAACCGTTGACACCAAATACTCAGATAATATCATCATTTTATCAACAACCTTCAGGACATCAAAACCATCTTCCCA-CCCAGTCTC-GAGTACAACCCTCAATACCTCTATCCTCT-CAAAACTCAGCACAACCTAAAGTTGATTGCAATGATACTCCTAGGATGCCTAACACATCAACTCCGACGTTACAACAGTATAGTACGCCATCTTTCAGGCCTCCCGGTGTAGCAAACATGCCACCAAATATGGGTCCTTACGCTCGGCAATCTGGAACACAACCAAACACCAATAGACCTATGGGTATGCTTGTAACCCCTCCAAATCCATCATCTAACATGTTTACACCTGTAATTCCACCGTGCGATCCTTCAGCTGGATTAGGGACACCACAGCGTCCAATTATGCCGCCTCTTTCAGGCTCTCCTAGGAATTCTACGACACAAAGTGCAATACAGTCCACACCTATGATTCCACATTTTTGTAATGGTTATCGCATTGTGTATAATTTGGAAGGGTATATCTATCACAGTCTGCCATAATCATCCTTCATTGTAACCACAAACATCGAAATTAAGAGGTTGTGTGTCACAATGAACAAAATAGTTCTG]
[+] EMBL AI067328 [GACGTATCATTACCACGGAGTAGAGAGGACATTAGGTTGCAACGTTTCATCATGGATCTCTCTGGGAAACTTATTATCAAAGCTCAACTTGGACATGACTTGAGACGCATCCCAATACATAATGAGGAAATTACTTATGATGAACTTATTTTAATGATGCAACGTGTCTTCAAACAGTATATAACAAAGGAAGATGAATTATTGGTAAAATATAAAGACGAAGATGGGGACTTTATAACGATTGAGGATGAGTCTGAGCTCTCTCTCGCCATACAATCCAGCAGGGTGTTACAAATTAAAATCTTCGTTGTTAACAAACCTGAAATATTACAATGTACTGCTCCATTTAAGAGCAGAACAGACGATGAAGCTAAAGAACTCGA ]
[+] EMBL CD149652 [ cagcTGAGACGCGTCCCAATACATAATGAGGAAATTACTTATGATGAACTTATTTTAATGATGCAACGTGTCTTCAAACAGTATATAACAAAGGAAGATGAATTATTGGTAAAATATAAAGACGAAGATGGGGACTTTATAACGATTGAGGATGAGTCTGAGCTCTCTCTCGCCATACAATCCAGCAGGGTGTTACAAATTAAAATCTTCGTTGTTAACAAACCTGAAATATTACAATGTACTGCTCCATTTAAAAACAGAAAAGACGATGAAGCTAAAAAACTCGAATCAGGAGATACGTTATCTTTAGTTTACGAACTTCAACGGCTTGGTAACCACATCCTAAACGTTGCTGA TCGTATGCAAAAGACGTTTTCTGCCAACAACTCTATGGACATAGCTCTCACTAACTGTAATCGACTTGAGATAGTAAACAAAAGAGACTCAATATGCAACCCGGAGAGGTACAAGGAATTCGATCCGTTATCTAATGT ]
[+] EMBL CD071590 [ AAACTCGAATCAGGAGATACGTTATCTTTAGTTTACGAACTTCAACGGCTTGGTAACCACATCCTAAACGTTGCTGA TCGTATGCAAAAGACGTTTTCTGCCAACAACTCTATGGACATAGCTCTCACTAACTGTAATCGACTTGAGATAGTAAACAAAAGAGACTCAATATGCAACCCGGAGAGTAACAAGGAATTCGATCCGTTATCTAATGTTCGATCTACAGATGTTACAATCTCTTCTCCGAATCCACCCATCTACTTGTCATCAGTCAACAGTTCAGATGACATTTCGAAATCAGAATCTTGTGAAAATTACATGGTTT CCAAATCAACTTTCTCAACAGCTGGGTCGTTAGATAACGAGGGGCTAAATTCGTCC AAAAAGTCTGCTGATCATGACCCTATAGATCTCCAAGCTCCTACTACATTTAGTCACTCTAATGCAGAAGCGGTCCCATCGGCAGTGCTTAATAGTAGTTCTACACTCTCCACTACGATACTGCCGTCTCAGGGTCAACCGTTGACACCAAATACTCAGATAATATCATCATTTTATCAACAACCTTCAGGACATCAA ]
[+] EMBL CD118370 [ CTTTAGTTTACGAACTTCAACGGCTTGGTAACCACATCCTAAACGTTGCTGA TCGTATGCAAAAGACGTTTTCTGCCAACAACTCTATGGACATAGCTCTCACTGACTGTAATCGACTTGAGATAGTAAACAAAAGAGACTCAATATGCAACCCGGAGAGTAACAAGGAATTCGATCCGTTATCTAATGTTCGATCTACAGATGTTACAATCTCTTCTCCGAATCCACCCATCTACTTGTCATCAGTCAACAGTTCAGATGACATTTCGAAATCAGAATCTTGTGAAAATTACATGGTTTTCCCAAATCAACTTTCCCAACAGCTGGGTCGTT ]
[-] EMBL CD155577 [ TTTAGTTTACGAACTTCAACGGCTTGGTAACCACATCCTAAACG TGCTGANTCGTATGCAAAAGACGTTTTCTGCCAACAACTCTATGGACATAGCTCTCACTAACTGTAATCGACTTGAGATAGTAAACAAAAGAGACTCAATATGCAACCCGGAGAGTAACAAGGAATCCGATCCGTTATCTAATGTTCGATCTACAGATGTTACAATCTCTTCTCCGAATCCACCCATCTACTCGTCATCAGTCAACAGTTCAGATGACATTTCGAAATCAGAATCTTGTGAAAATTACATGGTTT CCAAATCAACTTTCTCAACAGCTGGGTCGTTAGATAACGAGGGGCTAAATTCGTCC AAAAAGTCTGCTGATCATGACCCTATAGATCTCCAAGCTCCTACTACATTTAGTCATTCTAATGCAGAAGCGGTCCCATCGGCAGTGCTTAATAGTAGTTCTACACTCTCCACTACGATACTGCCGTCTCAGGGTCAACCGTTGACACCAAATACTCAGATAATATCATCATTTTATCAACAACCTTCAGGACATCAAAACCATCTTCCCA CCCAGTCTC GAGTACAACCCTCAATACCTCTATCCTCT CAAAACTCAGCACAACCTAAAGTTGATT ]
[-] EMBL CD155612 [ TTTAGTTTACGAACTTCAACGGCTTGGTAACCACATCCTAAACGTTGCTGA TCGTATGCAAAAGACGTTTTCTGCCAACAGCTCTATGGACATAGCTCTCACTAACTGTAATCGACTTGAGATAGTAAACAAAAGAGACTCAATATGCAACCCGGAGAGTAACAAGGAATTCGATCCGTTATCTAATGTTCGATCTACAGATGTTACAATCTCTTCTCCGAATCCACCCATCTACTTGTCATCAGTCAACAGTTCAGATGACATTTCGAAATCAGAATCTTGTGAAAATTACATGGTTT CCAAATCAACTTTCTCAACAGCTGGGTCGTTAGATAACGAGGGGCTAAATTCGTCC AAAAAGTCTGCTGATCATGACCCTATAG ]
[-] EMBL CD155696 [ TTTAGTTTACGAACTTCAACGGCTTGGTAACCACATCCTAAACGTTGCTGA TCGTATGCAAAAGACGTTTTCTGCCAACAACTCTATGGACATAGCTCTCACTAACTGTAATCGACTTGAGATAGTAAACAAAAGAGACTCAATATGCAACCCGGAGAGTAACAAGGAATTCGATCCGTTATCTAATGTTCGATCTACAGATGTTACGATCTCTTCTCCGAATCCACCCATCTACTTGTCATCAGTCAACAGTTCAGATGACATTTCGAAATCAGAATCTTGTGAAAATTACATGGTTT CCAAATCAACTTTCTCAACAGCTGGGTCGTTAGATAACGAGGGGCTAAATTCGT ]
[-] EMBL CD135877 [ TTTAGTTTACGAACTTCAACGGCTTGGTAACCACATCTTAAACGTTGCTGA CCGTATGCAAAAGACGTTTTCTGCTAACAACTCTATGGACATAGCTCTCACTAACTGTAATCGACTTGAGATAGTAAACAAAAGAGACTCAATATGCAACCCGGAGAGTAACAAGGAATTCGATCCGTTATATAATGTTCGATCTACAGATGTTACAATCTCTTCTacata ]
[-] EMBL CD155583 [ TTTAGTTTACGAACTTCAACGGCTTGGTAACCACATCCTAAACGTTGCTGA TCGTATGCAAAAGACGTTTTCTGCCAACAACTCTATGGACATAGCTCTCACTAACTGTAATCGACTTCAGATAGTAAACAAAAG ]
[-] EMBL CD155615 [ TTTAGTTTACGAACTTCAACGGCTTGGTAACCACATCCTAAACGTTGCTGA TCGTATGCAAAAGACGTTTTCTGCCAACAGCTCTATGGACATAGCTCTCACTAACTGTAATCGACTTGAGATAGTAAACAAAAGAGACTCAATATGCAACCCGGAGAGTAACAAGGAATTCGATCCGTTATCTAATGTTCGATCTACAGATGTTACAATCTCTTCTCCGAATCCACCCATCTACTTGTCATCAGTCAACAGTTCAGATGACATTTCGAAATCAGAATCTTGTGAAAATTACATGGTTT CCAAATCAACTTTCTCAACAGCTGGGTCGTTAGATAACGAGGGGCTAAATTCGTCC AAAAAGTCTGCTGATCATGACCCTATAG ]
[-] EMBL CD155631 [ TTTAGTTTACGAACTTCAACGGCTTGGTAACCACATCCTAAACGTTGCTGA TCGTATGCAAAAGACGTTTTCTGCCAACAGCTCTATGGACATAGCTCTCACTAACTGTAATCGACTTGAGATAGTAAACAAAAGAGACTCAATATGCAACCCGGAGAGTAACAAGGAATTCGATCCGTTATCTAATGTTCGATCTACAGATGTTACAATCTCTTCTCCGAATCCACCCATCTACTTGTCATCAGTCAACAGTTCAGATGACATTTCGAAATCAGAATCTTGTGAAAATTACATGGTTT CCAAATCAACTTTCTCAACAGCTGGGTCGTTAGATAACGAGGGGCTAAATTCGTCC AAAAAGTCTGCTGATCATGACCCTATAG ]
[-] EMBL CD155582 [ TTTAGTTTACGAACTTCAACGGCTTGGTAACCACATCCTAAACGTTGCTGA TCGTATGCAAAAGACGTTTTCTGCCAACAACTCTATGGACATAGCTCTCACTAACTGTAATCGACTTGAGATAGTAAACAAAAGAGACTCAATATGCAACCCGGAGAGTAACAAGGAATTCGATCCGTTATCTAATGTTCGATCTACAGATGTTACAATCTCTTCTCCGAATCCACCCATCTACTTGTCATCAGTCAACAGTTCAGATGACATTTCGAAATCAGAATCTTGTGAAAATTACATGGTTT CCAAATCAACTTTCTCAACAGCTGGGTCGTTAGATAACGAGGGGCTAAATTCGTCC AAAAAGTCTGCTGATCATGACCCTATAG ]
[-] EMBL CD155611 [ TTTAGTTTACGAACTTCAACGGCTTGGTAACCACATCCTAAACGTTGCTGA TCGTATGCAAAAGACGTTTTCTGCCAACAACTCTATGGACATAGCTCTCACTAACTGTAATCGACTTGAGATAGTAAACAAAAGAGACTCAATATGCAACCCGGAGAGTAACAAGGAATTCGATCCGTTATCTAATGTTCGATCTACAGATGTTACAATCTCTTCTCCGAATCCACCCATCTACTTGTCATCAGTCAACAGTTCAGATGACATTTCGAAATCAGAATCTTGTGAAAATTACATGGTTT CCAAATCAACTTTCTCAACAGCTGGGTCGTTAGATAACGAGGGGCTAAATTCGTCC AAAAAGTCTGCTGATCATGACCCTATAG ]
[-] EMBL CD135821 [ cgCTGTAATCGACTTGAGATAGTAAACAAAAGAGACTCAATATGCAACCCGGAGAGTAACAAGGAATTCGATCCGTTATGTAATGTTCGATCTACAGATGTTACAATCTCTTCTCCGAATCCACCCATTTACTTGTCATCAGTCAACA TTCGGATGc ]
[+] EMBL CD148155 [ GAGACTCAATATGCAACCCGGAGAGTAACAAGGAATTCGATCCGTTATCTAATGTTCGATCTACAGATGTTCCAATCTCTTCTCCGAATCCACCCATCTACTTGTCATCAGTCAACAGTTCAGATGACATTTCGAAATCAGAATCTTGTGAAAATTACATGGTTT CCAAATCAACTTTCTCAACAGCTGGGTCGTTAGATAACGAGGGGCTAAATTCGTCC AAAAAGTCTGCTGATCATGACC ]
[-] EMBL CD155601 [ GACTCAATATGCAACCCGGAGAGTAACAAGGAATCCGATCCGTTATCTAATGTTCGATCTACAGATGTTACAATCTCTTCTCCGAATCCACCCATCTACTCGTCATCAGTCAACAGTTCAGATGACATTTCGAAATCAGAATCTTGTGAAAATTACATGGTTT CCAAATCAACTTTCTCAACAGCTGGGTCGTTAGATAACGAGGGGCTAAATTCGTCC AAAAAGTCTGCTGATCATGACCCTATAGATCTCCAAGCTCCTACTACATTTAGTCATTCTAATGCAGAAGCGGTCCCATCGGCAGTGCTTAATAGTAGTTCTACACTCTCCACTACGATACTGCCGTCTCAGGGTCACCCGTTGACACCAAATACTCAGATAATATCATCATTTTATCAACAACCTTCAGGACATCAAAACCATCTTCCCA CCCAGTCTC GAGTACAACCCTCAATACCTCTATCCTCT CAAAACTCAGCACAACCTAAAGTTGATT ]
[-] EMBL CD201155 [ AATTCGATCCGTTATCTAATGTTCGATCTACAGATGTTACAATCTCTTCTCCGAATCCACCCATCTACTTGTCATCAGTCAACAGTTCAGATGACATTTCGAAATCAGAATCTTGTGAAAATTACATGGTTT CCAAATCAACTTTCTCAACAGCTGGGTCGTTAGATAACGAGGGGCTAAATTCGTCCAAAAAAGTCTGCTGATCATGACCCTATAG ]
[-] EMBL CD113145 [ GATGACATTTCGAAATCAGAATCTTGTGAAAATTACATGGTTT CCAAATCAACTTTCTCAACAGCTGGGTCGTTAGATAACGAGGGGCTAAATTCGTCC AAAAAGTCTGCTGATCATGAC ]
[-] EMBL CD155769 [ AAATCAACTTTCTCAACAGCTGGGTCGTTAGATAACGAGGGGCTAAATTCGTCC ANAAAGTCTGCTGATCATGACCCTATAG ]
[+] EMBL CD197857 [ GATCTCCAAGCTCCTACTACATTTAGTCATTCTAATGCAGAAGCGGTCCCATCGGCAGTGCTGAGTAGTAGTTCTACACTCTCCACTACGATACTGCCGTCTCAGGGTCAACCGTTGACACCAAATACTCAGATAATATCATCATTTTATCAACAACCTTCAGGACATCAAAACCATCTTCCCA CCCAGTCTC GAGTACAACCCTCAATACCTCTATCCTCT CAAAACTCAGCACAACCTATAGTTGATTGCAATGATACTCCTAGGATGCCTAACACATCAACTCCGACGTTACAACAGTATAGTACGCCATCTTTCAGGCCTCCCGGTGTAGCAAACATGCCACCAAATATGGGTCCTTACGCTCGGCAATCTGGAACACAACCAAACACCAATAGACCTATGGGTATGCTTGTAACCCCTCCAAATCCATCATCTAACATG ]
[+] EMBL CD197716 [ GATCTCCAAGCTCCTACTACATTTAGTCATTCTAATGCAGAAGCGGTCCCATCGGCAGCGCTTAATAGTAGTTCTACACTCTCCACTACGATACTGCCGTCTCAGGGTCAACCGTTGACACCAAATACTCAGATAATATCATCATTTTATCAACAACCTTCAGGACATCAAAACCATCTTCCCA CCCAGTCTC GAGTACAACCCTCAATACCTCTATCCTCT CAAAACTCAGCACAACCTAAAGTTGATTGCAATGATACTCCTAGGATGCCTAACACATCAACTCCGACGTTACAACAGTATAGTACGCCATCTTTCAGGCCTCCCGGTGTAGCAAACATGCCACCCAATATTGGTCCTTACGCTCGGCAATCTGGAACACAACCCAACACCCATA ]
[+] EMBL BG931106 [ aTCAACCGTTGACACCAAATACTCAGATAATATCATCATTTTATCAACAACCTTCAGGACATCAAAACCATCTTCCCA CCCAGTCTC GAGTACAACCCTCAATACCTCTATCCTCT CAAAACTCAGCACAACCTAAAGTTGATTGCAATGATACTCCTAGGATGCCTAACACATCAACTCCGACGTTACAACAGTATAGTACGCCATCTTTCAGGCCTCCCGGTGTAGCAAACATGCCACCAAATATGGGTCCTTACGCTCGGCAATCTGGAACACAACCAAACACCAATAGACCTATGGGTATGCTTGTg ]
[-] EMBL CD197726 [ TCCCACCCCAGTCTCGGAGTACAACCCTCAATACCTCTATCCTTTCCAAAACTCAGCACAACCTAAAGTTGATTGCAGTGATACTCCTAGGATGCCTAACACATCAACTCCGACGTTACAACAGTATAGTACGCCATCTTTCAGGCCTCCCGGTGTAGCAAACATGCCACCANATATGGGTCCTTACGCTCGGCGATCTGGAACACAACCAAACACCAATAGACCTATGGGTATGCTTGTAACCCCTCCAAATCCATCATCTAACATGTTTACACCTGTAATTCCACCGTGCGATCCTTCAGCTGGATTAGGGACACCACAGCGTCCAATTATGCCGCCTCTTTCAGGCTCTCCTAGGAATTCTACGACACAAAGTGCAATACAG ]
[-] EMBL CD180896 [ AACCCTCAATACCTCTATCCTCT CAAAACTCAGCACAACCTAAAGTTGATTGCAATGATACTCCTAGGATGCCTAACACATCAACTCCGACGTTCCAACAGTATAGTACGCCATCTTTCAGGCCTCCCGGTGTAGCAAACATGCCACCAAATATGGGTCCTTTCGCTCGGCAATCTGGAACACAACCAAACACCAATAGACCTATGGGTATGCTTGTAACCCCTCCAAATCCATCATCTAACATGTTTACACCTGTAATTCCACCGTGCG ]
[-] EMBL CD069013 [ TGATTGCAATGATACTCTTAGGATGCCTAACACATCAACTCTGACGTTACAACAGTATAGTACGCCATCTTTCAGGCCTCCCGGTGTAGCAAACATGCCACCAAATATGGGTCCTTACGCTCGGCAATCTGGAACACAACCAAACACCAATAGACCTATGGGTATGCTTGTAACCCCTCCAAATCCATCATCTAACATGTTTACACCT ]
[-] EMBL CD060730 [ CGCCATCTTTCAGGCCTCCCGGTGTAGCAAACATGCCACCAAATATGGGTCCTTACGCTCGGCAATTTGGAACGCAACCAAACACCAATAGACCTATGGGTATGCTTGTAACCCCTCCAAATCCATCATCTAACATGTTTACACCTGTAATTCCACCCTGCGA ]
[+] EMBL CD119284 [ CTTTCAGGCCTCCCGGTGTAGCAAACATGCCACCAAATATGGGTCCTTACGCTCGGCAATCTGGAACACAACCAAACACCAATAGACCTATGGGTATGCTTGTAACCCCTCCAAATCCATCATCTAACATGTTTACACCTGTAATTCCACCGTGCGATCCTTCAGCTGGATTAGGGACACCACAGCGTCCAATTATGCCGCCTCTTTCAGGCTCTCCTAGGAATTCTACGACACAAAGTGCAATACAGTCCACACCTATGATTCCACATTTTTGTAATGGTTATCGCATTGTGTATAATTTGGAAGGGTATATCTATCACAGTCTGCCATAATCATCCTTCATTGTAACCACAAACATCGAAATTAAGAGGTTGTGTGTCACAATGAACAAAATAGTTCTG]
consensusID : consensus_11207#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 618 fasta sequence
[GCCACCAAATATGGGTCCTTACGCTCGGCAATCTGGAACACAACCAAACACCAATAGACCTATGGGTATGCTTGTAACCCCTCCAAATCCATCATCTAACATGTTTACACCTGTAATTCCACCGTGCGATCCTTCAGCTGGATTAGGGACACCACAGCGTCCAATTATGCCGCCTCTTTCAGGCTCTCCTAGGAATTCTACGACACAAAGTGCAATACAGTCCACACCTATGATTCCACATGGCATGTCATATCCACCTATGTATCCNCCTCCAGCTCAAAGTATGGATTCTTCGACACGTCCCATGTGTCCTCCAATTCAAAATACTTTTGTATCGGGTTCCTACAATTCAATGCATTCTAGTGCTGCCCTTCCTGTAACATCACTAAACACTATCTTATCAAAAGCAAGCCCGGCTCCTAATGAGACTCATTATTACACCCCATCCTATCCTAATTATCAATAATGATGCCTTATTTTTACTCCAAGGTGCTTATTGTTTAAGCTGGCCTGTCATTCGATAGCTTCACATCGTGA-TGTGACATACAGTTATTTAGAATTTCCTAAATTTCAGCATATTTTGCGTTAAGTGCACAATGTCGGATTCGGGGATCCTCT]
[+] EMBL CD070487 [GCCACCAAATATGGGTCCTTACGCTCGGCAATCTGGAACACAACCAAACACCAATAGACCTATGGGTATGCTTGTAACCCCTCCAAATCCATCATCTAACATGTTTACACCTGTAATTCCACCGTGCGATCCTTCAGCTGGATTAGGGACACCACAGCGTCCAATTATGCCGCCTCTTTCAGGCTCTCCTAGGAATTCTACGACACAAAGTGCAATACAGTCCACACCTATGATTCCACATGGCATGTCATATCCACCTATGTATCCNCCTCCAGCTCAAAGTATGGATTCTTCGACACG ]
[-] EMBL CD143511 [ CCACCAAATATGGGTCCTTACGCTCGGCAATTTGGTACACAACCAAACACCAATAGACTTATGGGTATGCTTGTAACCCCTCCAAATCCATCATTTAACATGTTTACACCTGTAATTCCACCGTGCGATCCTTCAGCTGGATTAGGGACACCACAGCGTCCAATTATGCCGCATCTTTCAGGCTCCCCTAGG ]
[-] EMBL CD154693 [ TTACACCTGTAATTCCACCGTGCGATCCTTCAGCTGGATTAGGGACACCACAGCGTCCAATTATGCCGCCTCTTTCAGGCTCTCCTAGGAATTCTACGACACAAAGTGCAATACAGTCCACACCTATGATTCCACATGGCATGTCATA ]
[+] EMBL CD061289 [ TACAGTCCACACCTATGATTCCACATGGCATGTCATATCCACCTATGTATCC CCTCCAGCTCAAAGTATGGATTCTTCGACACGTCCCATGTGTCCTCCAATTCAAAATACTTTTGTATCGGGTTCCTACAATTCAATGCATTCTAGTGCTGCCCTTCCTGTAACATCACTAAACACTATCTTATCAAAAGCAAGCCCGGCTCCTAATGAGACTCATTATTACACCCCATCCTATCCTAATTATCAATAATGATGCCTTATTTTTACTCCAAGGTGCTTATTGTACAAGCTGGCCTGTCATTCGATAGCTTCACATCGTGA TGTGACATACAGTTATTTAGAATTACCTAAATTTCAGCATATT ]
[-] EMBL CD061217 [ CACCTATGATTCCACATGGCATGTCATATCCACCTATGTATCCCCCTCCAGCTCAAAGTATGGATTCTTCGACACGTCCCATGTGTCCTCCAATTCAAAATACTTTTGTATCGGGTTCCTACAATTCAATGCATTCTAGTGCTGCCCTTCCTGTAACATCACTAAACACTATCTTATCAAAAGCAAGCCCGGCTCCTAATGAGACTCATTATTACACCCCATCCTATCCTAATTATCAATAATGATGCCTTATTTTTACTCCAAGGTGCTTATTGTTTAAGCTGGCCTGTCATTCGATAGCTTCACATCGTGA TGTGACATACAGTTATTTAGAATTTCCTAAATTTCAGCATATTTTGCGTTAAGTGCACAATGTCGGATTCGGGGATCCTCT]
[+] EMBL AW063009 [ CCTCCAATTCAAAATACTTTTGTATCGGGTTCCTACAATTCAATGCATTCTAGTGCTGCCCTTCCTGTAACATCACTAAACACTATCTTATCAAAAGCAAGCCCGG TCCTAATGAGATTC TTATTAAAACCC TTCTATACT ATTATC ATAATGATGCCTTATTTTTACTCCAAGGTGCTTATTGTTTAAGCTGG CTGTCATTCGATAGCTTCACATCGTGATTGTGACATAAAGTTATTTAGAATTTCCTAAATTTCc ]
consensusID : consensus_11207#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 553 fasta sequence
[TTCGATAGCTTCACATCGTGATGTGACATACAGTTATTTAGAATTTCCTAAATTTCAGCATATTTTGCGTTAAGTGCACACGCAAATTGATTACTTTGGTTTATGGTTACATAAAATTTTGATTATAAACCCCTTAAAATGATATTTTGAATTCAATTTCTTTTACACTTGGTTTCTTATCAATTTTGGTCAGTAATATGTATTAATCATGTTTTGTGGTTTTATTTCATCTTTTACTGCAGTTTTGTAATGGTTATCGCATTGTGTATAATTTGGAAGGGTATATCTATCACAGTCTGCCATAATCATCCTTCATTGTAACCACAAACATCGAAATTAAGAGG-TTGTGTGTCACAATG-AACAAAATAGTTCTGCGATTTCTGGG--ATGTNTGTT-AGAAAATCTTTTTATTGTACTGGGATTTAAACTTCAGTAGTTAAACNATATATTTGAAAATACACTGTATTCCTCGTAAAACTATAAGAAAATCAAATGTCTCGTGTTTTGCAAATATTTCTTAGTAGTTCTATAACTCTTAAGTTGGGAGTGTCTATA]
[+] EMBL AI111114 [TTCGATAGCTTCACATCGTGATGTGACATACAGTTATTTAGAATTTCCTAAATTTCAGCATATTTTGCGTTAAGTGCACACGCAAATTGATTACTTTGGTTTATGGTTACATAAAATTTTGATTATAAACCCCTTAAAATGATATTTTGAATTCAATTTCTTTTACACTTGGTTTCTTATCAATTTTGGTCAGTAATATGTATTAATCATGTTTTGTGGTTTTATTTCATCTTTTACTGCAGTTTTGTAATGGTTATCGCATTGTGTATAATTTGGAAGGGTATATCTATCACAGTCTGCCATAATCATCCTTCATTGTAACCACAAACATCGAAATTAANAGG TTGTGTGTCACAATGAAACAAAATAGTTCTGCNATTTCTGGG ATGTATGTT AGAAAATCTTTTTATTGTACTGGGATTTAAACTTCAGTAGTTAAACNATATATTTGAAAATACACTGTATTCCTCGTAAAACTATAAGAAAATCAAATGTCTCGTGTTTTGCAAATATTTCTTAGTAGTTCTATAACTCTTAAGTTGGGAGTGTCTATA]
[+] EMBL AI111038 [TTCGATAGCTTCACATCGTGATGTGACATACAGTTATTTAGAATTTCCTAAATTTCAGCATATTTTGCGTTAAGTGCACACGCAAATTGATTACTTTGGTTTATGGTTACATAAAATTTTGATTATAAACCCCTTAAAATGATATTTTGAATTCAATTTCTTTTACACTTGGTTTCTTATCAATTTTGGTCAGTAATATGTATTAATCATGTTTTGTGGTTTTATTTCATCTTTTACTGCAGTTTTGTAATGGTTATCGCATTGTGTATAATTTGGAAGGGTATATCTATCACAGTCTGCCATAATCATCCTTCATTGTAACCACAAACATCGAAATTAAGAGGTTTGTGTGTCACAATG AACAAAATAGTTCTGCGATTTCTGGGGAATGTNTGTTAAGAAAATCTTTTTATTGTACTGGGATTTAAACTTCAGTta ]
[+] EMBL AI111080 [TTCGATAGCTTCACATCGTGATGTGACATACAGTTATTTAGAATTTCCTAAATTTCAGCATATTTTGCGTTAAGTGCACACNCAAATTGATTACTTTGGTTTATGGTTACATAAAATTTTGATTATAAACCCCTTAAAATGATATTTTGAATTCAATTTCTTTTACACTTGGTTTCTTATCAATTTTGGTCAGTAATATGTATTAATCATGTTTTGTGGTTTTATTTCATCTTTTACTGCAGTTTTGTAATGGTTATCGCATTGTGTATAATTTGGAAGGGTNTATCTATCACAGTCTGCCATAATCATCCTTCATTGTTACCCCAAACA ]
[-] EMBL CD118184 [ CACACGCAGATTGATTACTTTGGTTTATGGTTACATAAAATTTTGATTATAAACCCCTTAAAATGATATTTTGAATTCAATTTCTTTTACACTTGGTTTCTTATCAATTTTGGTCAGTAATATGTATTAATCATGTTTTGTGGTTTTATTTCATCTTTTACTGCAGTTTTGTAATGGTTATCGCATTGTGTATAATTTGGAAGGGTATATCTATCACAGTCTGCCATAATCATCCTTCATTGTAACCACAAACATCGAAATTAAGAGG TTGTGTGTCACAATG AACAAAATAGTTCTGCGATTCCTGGG ATGTGTGTT AGAAAATCTTTTTATTGTACTGGGATTTAAACTTCAGTAGTTAAACGATATATTTGAAAATACACTATATTCCTCGTAAAACTATAAG AAATCAAATGTCTCGTGTTTTGCAGATATTTCTTAGTAGTTCTA ]
consensusID : consensus_11207#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 362 fasta sequence
[TTTTTTTTTTTTTTTTTTAAAACCACAAAACATGATTAATACATATTACTGACCAAAATTGATAAGAAACCAAGTGTAAAAGAAATTGAATTCAAAATATCATTTTAAGGGGTTTATAATCAAAATTTTATGTAACCATAAACCAAAGTAATCAATCTGCGTGTGCACTTAACGCAAAATATGCTGAAATTTAGGAAATTCTAAATAACTGTATGTCACATCACGATGTGAAGCTATCGAATGACAGGCCAGCTTAAACAATAAGCACCTTGGAGTAAAAATAAGGCATCATTATTGATAATTAGGATAGATGGGGTGTAAAAATGGGGTCCTCATTAGGAGCCGGGCTTGCTTTCTGAAAG]
[+] EMBL AI395069 [TTTTTTTTTTTTTTTTTTAAAACCACAAAACATGATTAATACATATTACTGACCAAAATTGATAAGAAACCAAGTGTAAAAGAAATTGAATTCAAAATATCATTTTAAGGGGTTTATAATCAAAATTTTATGTAACCATAAACCAAAGTAATCAATCTGCGTGTGCACTTAACGCAAAATATGCTGAAATTTAGGAAATTCTAAATAACTGTATGTCACATCACGATGTGAAGCTATCGAATGACAGGCCAGCTTAAACAATAAGCACCTTGGAGTAAAAATAAGGCATCATTATTGATAATTAGGATAGATGGGGTGTAAAAATGGGGTCCTCATTAGGAGCCGGGCTTGCTTTCTGAAAG]
[+] EMBL AI395105 [TTTTTTTTTTTTTTTTTTAAAACCACAAAACATGATTAATACATATTACTGACCAAAATTGATAAGAAACCAAGTGTAAAAGAAATTGAATTCAAAATATCATTTTAAGGGGTTTATAATCAAAATTTTATGTAACCATAAACCAAAGTAATCAATCTGCGTGTGCACTTAACGCAAAATATGCTGAAATTTAGGAAATTCTAAATAACTGTATGTCACATCACGATGTGAAGCTATCGAATGACAGGCCAGCTTAAACAATAAGCACCTTGGAGTAAAAATAAGGCATCATTANTGA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11207#0 GACGTATCATTACCACGGAGTAGAGAGGACATTAGGTTGCAACGTTTCATCATGGATCTC 60
consensus_11207#1 ------------------------------------------------------------
consensus_11207#2 ------------------------------------------------------------
consensus_11207#3 ------------------------------------------------------------
consensus_11207#0 TCTGGGAAACTTATTATCAAAGCTCAACTTGGACATGACTTGAGACGCATCCCAATACAT 120
consensus_11207#1 ------------------------------------------------------------
consensus_11207#2 ------------------------------------------------------------
consensus_11207#3 ------------------------------------------------------------
consensus_11207#0 AATGAGGAAATTACTTATGATGAACTTATTTTAATGATGCAACGTGTCTTCAAACAGTAT 180
consensus_11207#1 ------------------------------------------------------------
consensus_11207#2 ------------------------------------------------------------
consensus_11207#3 ------------------------------------------------------------
consensus_11207#0 ATAACAAAGGAAGATGAATTATTGGTAAAATATAAAGACGAAGATGGGGACTTTATAACG 240
consensus_11207#1 ------------------------------------------------------------
consensus_11207#2 ------------------------------------------------------------
consensus_11207#3 ------------------------------------------------------------
consensus_11207#0 ATTGAGGATGAGTCTGAGCTCTCTCTCGCCATACAATCCAGCAGGGTGTTACAAATTAAA 300
consensus_11207#1 ------------------------------------------------------------
consensus_11207#2 ------------------------------------------------------------
consensus_11207#3 ------------------------------------------------------------
consensus_11207#0 ATCTTCGTTGTTAACAAACCTGAAATATTACAATGTACTGCTCCATTTAAGAGCAGAACA 360
consensus_11207#1 ------------------------------------------------------------
consensus_11207#2 ------------------------------------------------------------
consensus_11207#3 ------------------------------------------------------------
consensus_11207#0 GACGATGAAGCTAAAAAACTCGAATCAGGAGATACGTTATCTTTAGTTTACGAACTTCAA 420
consensus_11207#1 ------------------------------------------------------------
consensus_11207#2 ------------------------------------------------------------
consensus_11207#3 ------------------------------------------------------------
consensus_11207#0 CGGCTTGGTAACCACATCCTAAACGTTGCTGATCGTATGCAAAAGACGTTTTCTGCCAAC 480
consensus_11207#1 ------------------------------------------------------------
consensus_11207#2 ------------------------------------------------------------
consensus_11207#3 ------------------------------------------------------------
consensus_11207#0 AACTCTATGGACATAGCTCTCACTAACTGTAATCGACTTGAGATAGTAAACAAAAGAGAC 540
consensus_11207#1 ------------------------------------------------------------
consensus_11207#2 ------------------------------------------------------------
consensus_11207#3 ------------------------------------------------------------
consensus_11207#0 TCAATATGCAACCCGGAGAGTAACAAGGAATTCGATCCGTTATCTAATGTTCGATCTACA 600
consensus_11207#1 ------------------------------------------------------------
consensus_11207#2 ------------------------------------------------------------
consensus_11207#3 ------------------------------------------------------------
consensus_11207#0 GATGTTACAATCTCTTCTCCGAATCCACCCATCTACTTGTCATCAGTCAACAGTTCAGAT 660
consensus_11207#1 ------------------------------------------------------------
consensus_11207#2 ------------------------------------------------------------
consensus_11207#3 ------------------------------------------------------------
consensus_11207#0 GACATTTCGAAATCAGAATCTTGTGAAAATTACATGGTTTCCAAATCAACTTTCTCAACA 720
consensus_11207#1 ------------------------------------------------------------
consensus_11207#2 ------------------------------------------------------------
consensus_11207#3 ------------------------------------------------------------
consensus_11207#0 GCTGGGTCGTTAGATAACGAGGGGCTAAATTCGTCCAAAAAGTCTGCTGATCATGACCCT 780
consensus_11207#1 ----------------------------------------------------GCCACCAA 8
consensus_11207#2 ------------------------------------------------------------
consensus_11207#3 ------------------------------------------------------------
consensus_11207#0 ATAGATCTCCAAGCTCCTACTACATTTAGTCATTCTAATGCAGAAGCGGTCCCATCGGCA 840
consensus_11207#1 ATATGGGTCCTTACGCTCGGCAATCTGGAACACAACCAAACACCAATAGACCTATGGGTA 68
consensus_11207#2 --------------------------------------TTCGATAGCTTCACATCGTGAT 22
consensus_11207#3 ------------------------------------------------------------
consensus_11207#0 GTGCTTAATAGTAGTTCTACACTCTCCA-CTACGATACTGCCGT-CTCAGGGTCAACCGT 898
consensus_11207#1 -TGCTTG-TAACCCCTCCAAATCCATCATCTAACATGTTTACAC-CTGTAATTCCACCGT 125
consensus_11207#2 GTGACATACAGTTATTTAGAATTTCCTA-----AATTTCAGCATATTTTGCGTTAAGTGC 77
consensus_11207#3 ------------------------------------------------------------
consensus_11207#0 TGACACCAAATACTCAGATAATATCATCATTTTATCAACAACCTTCAGGACATCAAAACC 958
consensus_11207#1 GCGATCCTTCAGCTGGATTAGGGACACCACAGCGTCCAATTATGCCGCCTCTTTCAGGCT 185
consensus_11207#2 ACACGCAAATTGATTACTTTGGTTTATGGTTACATAAAATTTT-----GATTATAAACCC 132
consensus_11207#3 ----------------------------TTTTTTTTTTTTTTTTTTAAAACCACAAAACA 32
* * *
consensus_11207#0 ATCTTCCCACCCAGTCTCGAGTACAACCCTCAATACCTCTATCCTCTCAAAACTCAGCAC 1018
consensus_11207#1 ---CTCCTAGGAATTCTACGACACAAAGTGCAATACAGTC-CACACCTATGATTCCACAT 241
consensus_11207#2 --CTTAAAATGATATTTTGAATTCAATTTCTTTTACACTTGGTTTCTTATCAATTT---T 187
consensus_11207#3 TGATTAATACATATTACTGACCAAAATTGATAAGAAACCAAGTGTAAAAGAAATTG---- 88
* * * ** * * * *
consensus_11207#0 AACCTAAAGTTGATTGCAATGATACTCCTAGGATGCCTAACACATCAACTCCGACGTTAC 1078
consensus_11207#1 GGCATGTCATATCCACCTATG-TATCCNCCTCCAGCTCAAAGTATGGATTCTT-CGACAC 299
consensus_11207#2 GGTCAGTAATATGTATTAATCATGTTTT---GTGGTTT--TATTTCATCTTTTACTGCAG 242
consensus_11207#3 AATTCAAAATATCATTTTAAGGGGTTTA-----TAATCAAAATTTTA--TGTAACCATAA 141
* * * * * *
consensus_11207#0 AACAGTATAGTACGCCATCTTTCAGGCCTCCCGGTGTAGCAAACATGCCACCAAATATGG 1138
consensus_11207#1 GTCCCATGTGTCCTCCAA-TTCAAAATACTTTTGTATCGGGTTCCTACAATTCAATGCA- 357
consensus_11207#2 TTTTGTAATGGTTATCGCATTGTGTATAATTTGGAAGGGTATATCTATCAC--AGTCTG- 299
consensus_11207#3 ACCAAAGTAATCAATCTGCGTGTGCAC-TTAACGCAAAATATGC-TGAAATTTAGGAAA- 198
* * * * * *
consensus_11207#0 GTCCTTACGCTCGGCAATCTGGAACACAACCAAACACCAATAGACCTATGGGTATGCTTG 1198
consensus_11207#1 -TTCTAGTGCTGCCCTTCCTGTAACATCACTAAACACTATCTTATC-AAAAGCAAGCCCG 415
consensus_11207#2 -CCATAAT------CATCCTTCATTGTAACCACAAAC-ATCGAAATTAAGAGGTTGTGTG 351
consensus_11207#3 -TTCTAAATAACTGTATGTCACATCACGATGTGAAGCTATCGAATG-ACAGGCCAGCTTA 256
* * * * * * * * * *
consensus_11207#0 TAACCCCTCCAAATCCATCATCTAACATGTTTACACCTGTAATTCCACCGTGCGATCCTT 1258
consensus_11207#1 GCTCCTAATGAGACTCATTATTACACCCCATCCTATCC-TAATTATCAATAATGATGCCT 474
consensus_11207#2 TCAC--AATGAACAAAATAGTTCTGCGATTTCTGGGAT----GTNTGTTAGAAAATCTTT 405
consensus_11207#3 -AAC--AATAAGCACCTTGGAGTAAAAATAAGGCATCATTATTGATAATTAGGATAGATG 313
* * *
consensus_11207#0 CAGCTGGATTAGGGACACCACAGCGTCCAATTATGCCGCCTCTTTCAGGCTCTCCTAGGA 1318
consensus_11207#1 TATTTTTACTCCAAGGTGCTTATTGTTTAAGC-TGGCCTGTCATTCGATAGCTTCACATC 533
consensus_11207#2 TTATTGTACTGGGATTTAAACTTCAGT-AGTTAAACNATATATTTGAAAATACACTGTAT 464
consensus_11207#3 GGGTGTAAAAATGGGGTCCTCATTAGG-AGCCGGGCTTGCTTTCTGAAAG---------- 362
* * * *
consensus_11207#0 ATTCTACGACAC-AAAGTGCAATACAGTCCACACCTATGATTCCACATTTTTGTAATGGT 1377
consensus_11207#1 GTGATGTGACAT-ACAGTTATTTAGAATTT---CCTAAATTTCAGCATATTTT--GCGTT 587
consensus_11207#2 TCCTCGTAAAACTATAAGAAAATCAAATGT----CTCGTGTTTTGCAAATATTTCTTAGT 520
consensus_11207#3 ------------------------------------------------------------
consensus_11207#0 TATCGCATTGTGTATAATTTGGAAGGGTATATCTATCACAGTCTGCCATAATCATCCTTC 1437
consensus_11207#1 AAGTGCACAATGTCGGATTCGG---GGATCCTCT-------------------------- 618
consensus_11207#2 AGTTCTATAACTCTTAAGTTGG--GAGTGTCTATA------------------------- 553
consensus_11207#3 ------------------------------------------------------------
consensus_11207#0 ATTGTAACCACAAACATCGAAATTAAGAGGTTGTGTGTCACAATGAACAAAATAGTTCTG 1497
consensus_11207#1 ------------------------------------------------------------
consensus_11207#2 ------------------------------------------------------------
consensus_11207#3 ------------------------------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||