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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11215#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 36 consensus length = 1108 fasta sequence
[GATTGACCAGCAATACGTATGATAGTATATTGATGCTCACCGAGTAAAAATGTAGGCATACATTCGGCCGATATAATATATCGACTACAACTACGATCCGTTACAAGTCTTCCTGAAGTGAAATTATAAAAATTATGAGTACCCTTATACTTTTCAAGTAAACGATTAACTTGGGTAATTTGTTCAACTGTCAAACGATAAGTCCAACAAGTGGAATCGTTTAATGATGAAGTAGCAGGTGATAAGGCAAATGTAGGTAACAGATAATCATATATTCGATGTGTACACGAACTGTATGAAGAAAATCCACGAGTTACACGAATAATATCAAGAACACGAATATTTTCGGGCAAAGAGTTGTTCAATTTACTTAATAAATCTGTGTCTTCTTTTAATTGCATAGAACAAACTTGTCCAAGGGCGGAAACGGATTTGTCAGTTTTAGATGCACGTTGAAAATGAACTCTTTTATGTTCTTCACTTGTCAGATTATCGAGTTGACCACAAGTAAAGAGAGCTTTAGACAGTTCTCCTTCAATAGTTGGAAAAACAGGGCATCTTTGCATGCCATAATAACCCCAACCTGAATACATCAACAAAATGGCATTATTCCTACGTTTAGGTCTGGTGGAAGCATT-GGAG-AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT--GGTTGTTGTATATT-GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC-TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG-AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAC-GGTTTAAAGTGC-TTCTTTGG-TAA-TTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACT-GTTTGAAAGTTCACTTGTGTGTCCAACATCCAGCCGGCCCAATCACTAGGAATT]
[+] EMBL CD069238 [GATTGACCAGCAATACGTATGATAGTATATTGATGCTCACCGAGTAAAAATGTAGGCATACATTCGGCCGATATAATATATCGACTACAACTACGATCCGTTACAAGTCTTCCTGAAGTGAAATTATAAAAATTATGAGTACCCTTATACTTTTCAAGTAAACGATTAACTTGGGTAATTTGTTCAACTGTCAAACGATAAGTCCAACAAGTGGAATCGTTTAATGATGAAGTAGCAGGTGATAAGGCAAATGTAGGTAACAGATAATCATATATTCGATGTGTACACGAACTGTATGAAGAAAATCCACGAGTTACACGAATAATATCAAGAACACGAATATTTTCGGGCAAAGAGTTGTTCAATTTACTTAATAAATCTGTGTCTTCTTTTAATTGCATAGAACAAACTTGTCCAAGGGCGGAAACGGATTTGTCAGTTTTAGATGCACGTTGAACATGAACTCTTTTATGTTCTTCACTTGTCAGATTATCGAGTTGACCACAAGTAAAGA ]
[-] EMBL CD133226 [ TAAAAATTATGAGTACCCTTATACTTTTCAAGTAAACGATTAACTTGGGTAATTTGTTCAACTGTCAAACGATAAGTCCAACAAGTGGAATCGTTTAATGATGAAGTAGCAGGTGATAAGGCAAATGTAGGTAACAGATAATCATATATTCGATGTGTACACGAACTGTATGAAGAAAATCCACGAGTTACACGAATAATATCAAGAACACGAATATTTTCGGGCAAAGAGTTGTTCAATTTACTTAATAAATCTGTGTCTTCTTTTAATTGCATAGAACAAACTTGTCCAAGGGCGGAAACGGATTTGTCAGTTTTAGATGCACGTTGAAAATGAACTCTTTTATGTTCTTCACTTGTCAGATTATCGAGTTGACTACAAGTAAAGAGAGCTTTAGACAGTTCTCCTTCAATAGTTGGAAAAACAGGGCATCTTTGCATGCCATAATAACCCCAACCTGAATACATCAACAAAATGGCATTATTCCTACGTTTAGGTCTGGTGGAAGCATT GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT G ]
[+] EMBL CD141774 [ GTTCAATTTACTTAATAAATCTGTGTCTTCTTTTAATTGCATAGAACAAACTTGTCCAAGGGCGGAAACGGATTTGTCAGTTTTAGATGCACGTTGAAAATGAACTCTTTTATGTTCTTCACTTGTCAGATTATCGAGTTGACCACAAGTAAAGAGAGCTTTAGACAGTTCTCCTTCAATAGTTGGAAAAACAGGGCATCTTTGCATGCCATAATAACCCCAACCTGAATACATCAACAAAATGGCATTATTCCTACGTTTAGGTCTGGTGGAAGCATT GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTGTATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAA CGTTTAAAGTGC TTCTTTGG TAATTTCTTC TTTGCATACTAGCATAACAGCACGGCAGTTGAAACTGGTTTGAAAGTT ]
[+] EMBL CD123013 [ CTTAATAAATCTGTGTCTTCTTTTAATTGCATAGAACAAACTTGTCCAAGGGCGGAAACGGATTTGTCAGTTTTAGATGCACGTTGAAAATGAACTCTTTTATGTTCTTCACTTGTCAGATTATCGAGTTGACCACAAGTAAAGAGAGCTTTAGACAGTTCTCCTTCAATAGTTGGAAAAACAGGGCATCTTTGCATGCCATAATAACCCCAACCTGAATACATCAACAAAATGGCATTATTCCTACGTTTAGGTCTGGTGGAAGCATT GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCCTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGNGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCANACAAGTGAAGACTGTACCACGGTGA ]
[+] EMBL CD196067 [ AAAACAGGGCATCTTTGCATGCCATAATAACCCCAACCTGAATACAACAACAAAATGGCATTATTCCTACGTTTAGGTCTGGTGGAAGCATT GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTAGACAACC TTTTCATG ]
[+] EMBL CD186951 [ ATAACCCCAACCTGAATACATCAACAAAATGGCATTATTCCTACGTTTAGGTCTGGTGGAAGCATT GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCCTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAC GGTTTAAAGTGC TTCTTTGG TAA TTCTTCTTTTGCATACTAGCATAACAGCACGGCAGT ]
[+] EMBL CD187785 [ cgGGTCTGGTGGAAGCATT GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTT ]
[+] EMBL CD132420 [ tgtGTCTGGTGGAAGCATT GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTT ]
[+] EMBL CD183494 [ cctgtcaCTGGTGGAAGCATTCGGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAC GGTTTAAAGTGC TTCTTTGG TAA TTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACT GTTTGAAAGT ]
[+] EMBL CD189324 [ T GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTGTCTTTAAAAATAAGTGCTTT ]
[+] EMBL CD132390 [ T GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGC ]
[+] EMBL CD187821 [ T GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCTAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACCTTTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTC TTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAC GGTTTAAAGTGC TTCTTTGG TAA CTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACT GTTTGAAAGTca ]
[+] EMBL CD132409 [ T GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAC GGTTTAAAGTGC TTCTTTGGNAAA TTC TCTTTTGCATACTAGCATAACAGCACGGCAGNTGACACT GTTTGAAAagt ]
[+] EMBL CD132400 [ T GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAAACAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACACGGGTTAAAAGTGCTTTCTTTGA NAANTTNCTC TTTGCATACTAGCATAACAGCACGGCAGTTGACACT GGTTGAAAa ]
[+] EMBL CD187733 [ T GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAC GGTTTAAAGTGC TTCCTTGG TAA CTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACT GTTTGAAAGT ]
[+] EMBL CD132417 [ T GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCGAAACATCAAAC AGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAC GGTTTAAAGTGC TTTCTTGG NAA TTTCTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACT GTTTGAAAGT ]
[+] EMBL CD189071 [ T GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAC GGTTTAAAGTGC TTCTTTGG TAA CTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACT GTTTGAAAGT ]
[+] EMBL CD188998 [ T GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAC GGTTTAAAGTGC TTCTTTGG TAA CTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACT GTTTGANAGT ]
[+] EMBL CD188769 [ T GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAC GGTTTAAAGTGC TTCTTTGG TAA CTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACT GTTTGAAAG ]
[+] EMBL CD187636 [ T GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAAGCAGAAAGAAATCCCTGAGACGGTTTTACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATC ]
[+] EMBL CD189355 [ T GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAAT GTCATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTCTTTGATAACAGGTCGTTTATATATAT ]
[-] EMBL CD133056 [ GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAC GGTTTAAAGTGC TTCTTTGG TAA TTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACT GTTTGAAAGTTCACTTGTGTGTCCAACATCCA ]
[-] EMBL CD132381 [ GGAG AAACTAGGACTTGCCTCATCTACAATAGACCTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACCACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAC GGTTTAAAGTGC TTCTTTGG TAA TTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACT GTTTGAAAGTT ]
[-] EMBL CD188957 [ GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAGTGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTA ]
[-] EMBL CD190122 [ GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAC GGTTTAAAGTGC TTCTTTGG TAA TTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACT GTTTGAAAGTT ]
[-] EMBL CD189457 [ GGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGGCTGTACCACGGTGAGCAATCGTAAGAACAC GGTTTAAAGTGC TTCTTTGG TAA TTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACT GTTTGAAAGTT ]
[+] EMBL CD188643 [ tgcGAG AAACTAGGAACTGACTCATCTACAATAGACTTCGAAGAT GGCTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGATATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTACTCTTGTTGCTGTTTTTTGATAACAGGTCGCTTATATATATAATACTGCGCTAGTGATAGGACTGTGCACCCTGTGAGGGCTACACCG AACATCAGACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAC GGTTTANAGTGC TTCTTTGG TAA TTCTTCTTTTGCATACTAGCATAACAACACTGCAGTTGACACT GTTTGATAGTTCA ]
[-] EMBL CD132421 [ GAGAAAACTAGGANCTGACTCATCTACAATAGACTTCGAAGAT GGTTG TGTATATTNGGTANCCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAC GGTTTAAAGTGC TTCTTTGG TAA TTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACT GTTTGAAAGTT ]
[-] EMBL CD132413 [ GAG AAACTAGGAACTGACTCATCTACAATAGAC TCG AGATNNNGGTGTNGTATATT GGTANCCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAC GGTTTAAAGTGC TTCTTTGG TAA TTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACT GTTTGAAAGTT ]
[-] EMBL CD200869 [ ATAGACTTCGAAGAT GGTTGTTGTATATT GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCGCGGTGAGCAATCGTAAGAACAC GGTTTAAAGTGG TTCTTTGG TAA TTCTTCTTTTGCATACCAGCATAACAGCACGGCAGTTGACACT GTTTGAAAGTTCACTTGTGT TCCCAGACCGGGCCGGCCCAATCACTAGGAATT]
[+] EMBL CD161052 [ GGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACC TTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTATATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAC GGTTTAAAGTGC TTCTTTGG TAA TTCTTCTTTTGCATACTAGCATAACAGNACGGCAGTTGACACT GTTTGAAAGT ]
[-] EMBL CD132401 [ TCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAC GGTTTAAAGTGC TTCTTTAG TAA TTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACT GTTTGAAAGTT ]
[-] EMBL CD132388 [ GCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAC GGTTTAAAGTGC TTCTTTGG TAA TTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACT GTTTGAAAGTT ]
[-] EMBL CD132391 [ TTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAC GGTTTAAAGTGC TTCTTTGG TAA TTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACT GTTTGAAAGTT ]
[-] EMBL CD132399 [ GAAAGGACTGTGTACCCTGTGAGGGCTACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACAC GGTTTAAAGTGC TTCTTTGG TAA TTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACT GTTTGAAAGTT ]
[-] EMBL CD132404 [ TACACCG AACATCAAACAAGTGAAGACTGTACCACGGTGAGCAACCGTAAGAACAC GGTTTAAAGTGC TTCTTTGG TAA TTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACT GTTTGAAAGTT ]
consensusID : consensus_11215#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 922 fasta sequence
[GTTTGGAGTATTTTTATCTTCCTAGAAAAGCTTTTCACGCTTAAAAGTAATATGATTCAGTTTATAGAACCAATCTCGTGTAGTATTAATTTTGCATTTCTCAAAATTCTCTATTCACTGAACCTGTATGTTGTAAATGTACACACTTCTATGGACACTCCCGGTGCGTATACATAAATTCATGCACTTCGTGTGTTGATATAAATGTTCACGACGATAGAAGCAGCTTTCCTCACCATACAACATAGGATACGAAATTGCTCTTATGGTAATCGACAACTATTTTTTGTTATTCCATATTTTGTAGGAAAGTTTCGGTCAATGATACACACTTTAGGCATGTTGCTTGTTAAGGAGTGTTTATGTATGCAAACACAATTAACTGTTCATAATCAAAAAGTCGAATAATTAGCGCACTAAATTGTCAACTAACCTTTGCATGCCATAATAACCCCAACCTGAATACATCAACAAAATGGCATTATTCCTACGTTTAGGTCTGGTGGAAGCATTGGAGAAACTAGGAACTGACTCATCTANCATAGACTTCGAAGATGGTTGTTGTATATTGGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCGAACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACACGGTTTAAAGTGCTTCTTTGGTAATTCTTCTTTTGCATACTAGCATAACAGCTCGGCAGTTGACACTGTTTGAAAGTTCACTTGTGTCCAGACAAA]
[+] EMBL CD201731 [GTTTGGAGTATTTTTATCTTCCTAGAAAAGCTTTTCACGCTTAAAAGTAATATGATTCAGTTTATAGAACCAATCTCGTGTAGTATTAATTTTGCATTTCTCAAAATTCTCTATTCACTGAACCTGTATGTTGTAAATGTACACACTTCTATGGACACTCCCGGTGCGTATACATAAATTCATGCACTTCGTGTGTTGATATAAATGTTCACGACGATAGAAGCAGCTTTCCTCACCATACAACATAGGATACGAAATTGCTCTTATGGTAATCGACAACTATTTTTTGTTATTCCATATTTTGTAGGAAAGTTTCGGTCAATGATACACACTTTAGGCATGTTGCTTGTTAAGGAGTGTTTATGTATGCAAACACAATTAACTGTTCATAATCAAAAAGTCGAATAATTAGCGCACTAAATTGTCAACTAACCTTTGCATGCCATAATAACCCCAACCTGAATACATCAACAAAATGGCATTATTCCTACGTTTAGGTCTGGTGGAAGCATTGGAGAAACTAGGAACTGACTCATCTANCATAGACTTCGAAGATGGTTGTTGTATATTGGTA ]
[-] EMBL CD187646 [ GGAGAAACTAGGAACTGACTCATCTACAATAGACTTCGAAGATGGTTGTTGTATATTGGTAACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCGAACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACACGGTTTAAAGTGCTTCTTTGGTAATTCTTCTTTTGCATACTAGCATAACAGCTCGGCAGTTGACACTGTTTGAAAGTTCACTTGTGTCCAGACAAA]
consensusID : consensus_11215#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 388 fasta sequence
[TTGGAGAAACTAGGAACTGACTCATCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACCTTTTCATGTAGCCCCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACTCCGAACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACACGGTTTAAAGTGCTTCTTTGGTAATTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACTGTTTGAAAGT]
[+] EMBL CD194815 [TTGGAGAAACTAGGAACTGACTCATCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACCTTTTCATGTAGCCCCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACTCCGAACATCAAACAAGTGAAGACTGTACCACGGTGAGCAATCGTAAGAACACGGTTTAAAGTGCTTCTTTGGTAATTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACTGTTTGAAAGT]
consensusID : consensus_11215#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 332 fasta sequence
[ACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACCTTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCACGGTGAGCAATCGTAAGAACACGGTTTAAAGTGCTTCTTTGGTAATTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACTGTTTGAAAGT]
[-] EMBL CD202346 [ACCTCGCAAGACTTCAAAATGGACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACCTTTTCATGTAGCCTCACGTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGTGCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGGGCTAGTGAAAGGACTGTGTACCCTGTGAGGGCACGGTGAGCAATCGTAAGAACACGGTTTAAAGTGCTTCTTTGGTAATTCTTCTTTTGCATACTAGCATAACAGCACGGCAGTTGACACTGTTTGAAAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11215#0 GATTGACCAGCAATACGTATGATAGTATATTGATGCTCACCGAGTAAAAATGTAGGCATA 60
consensus_11215#3 ------------------------------------------------------------
consensus_11215#2 ------------------------------------------------------------
consensus_11215#1 ------------------------------------------------------------
consensus_11215#0 CATTCGGCCGATATAATATATCGACTACAACTACGATCCGTTACAAGTCTTCCTGAAGTG 120
consensus_11215#3 ------------------------------------------------------------
consensus_11215#2 ------------------------------------------------------------
consensus_11215#1 -----------------------------GTTTGGAGTATTTTTA--TCTTCCTAGAA-A 28
consensus_11215#0 AAATTATAAAAATTATGAGTACCCTTATACTTTTCAAGTAAACGATTAACTTGGGTAATT 180
consensus_11215#3 ------------------------------------------------------------
consensus_11215#2 ------------------------------------------------------------
consensus_11215#1 AGCTTTTCACGCTTAAAAGTAATATGATTCAGTTTATAGAACCAATCTCGTGTAGTATTA 88
consensus_11215#0 TGTTCAACTGTCAAACGATAAGTCCAACAAGTGGAATCGTTTAATGATGAAGTAGCAGGT 240
consensus_11215#3 ------------------------------------------------------------
consensus_11215#2 ------------------------------------------------------------
consensus_11215#1 ATTTTGCATTTCTCAAAATTC-TCTATTCACTGAACCTGTATGTTGTAAATGTACACACT 147
consensus_11215#0 GATAAGGCAAATGTAGGTAACAGATAATCATATATTCGATGTGTACACGAACTGTATGAA 300
consensus_11215#3 ------------------------------------------------------------
consensus_11215#2 ------------------------------------------------------------
consensus_11215#1 TCTATGGACACTCCCGGTG-CGTATA--CATAAATTCATGCACTTCGTGTGTTG-AT-AT 202
consensus_11215#0 GAAAATCCACGAGTTACACGAATAATATCAAGAACACGAATATTTTCGGGCAAAGAGTTG 360
consensus_11215#3 ------------------------------------------------------------
consensus_11215#2 ------------------------------------------------------------
consensus_11215#1 AAATGTTCACGA-CGATAGAAGCAGCTTTCCTCAC-CATACAACATAGGATACGAAATTG 260
consensus_11215#0 TTCAATTTACTTAATAAATCTGTGTCTTCTTTTAATTGCATAGAACAAACTTGTCCAAGG 420
consensus_11215#3 ------------------------------------------------------------
consensus_11215#2 ------------------------------------------------------------
consensus_11215#1 CTC--TTATGGTAATCGACAACTATTTTTTGTTA-TTCCATAT------TTTGT------ 305
consensus_11215#0 GCGGAAACGGATTTGTCAGTTTTAGATGCACGTTGAAAATGAACTCTTTTATGTTCTTCA 480
consensus_11215#3 ------------------------------------------------------------
consensus_11215#2 ------------------------------------------------------------
consensus_11215#1 --AGGAAAGTTTCGGTCAATGATACA--CACTTTAGGCATGTTGCTTGTTAAGGAGTGTT 361
consensus_11215#0 CTTGTCAGATTATCGAGTTGACCACAAGTAAAGAGAGCTTTAGACAGTTCTCCTTCAATA 540
consensus_11215#3 ------------------------------------------------------------
consensus_11215#2 ------------------------------------------------------------
consensus_11215#1 TATGTATGCAAACACAATTAACTGTTCATAATCAAAAAGTCGAATAATTAGCG--CACTA 419
consensus_11215#0 GTTGGAAAAACAGGGCATCTTTGCATGCCATAATAACCCCAACCTGAATACATCAACAAA 600
consensus_11215#3 ------------------------------------------------------------
consensus_11215#2 ------------------------------------------------------------
consensus_11215#1 AATTGTCAACTA----ACCTTTGCATGCCATAATAACCCCAACCTGAATACATCAACAAA 475
consensus_11215#0 ATGGCATTATTCCTACGTTTAGGTCTGGTGGAAGCATTGGAGAAACTAGGAACTGACTCA 660
consensus_11215#3 ------------------------------------------------------------
consensus_11215#2 ------------------------------------------------------------
consensus_11215#1 ATGGCATTATTCCTACGTTTAGGTCTGGTGGAAGCATTGGAGAAACTAGGAACTGACTCA 535
consensus_11215#0 TCTACAATAGACTTCGAAGATGGTTGTTGTATATTGGTAACCTCGCAAGACTTCAAAATG 720
consensus_11215#3 ---------------------------------------ACCTCGCAAGACTTCAAAATG 21
consensus_11215#2 -------------TTGGAGAAACTAGG---AACTGACTCATCTCGCAAGACTTCAAAATG 44
consensus_11215#1 TCTANCATAGACTTCGAAGATGGTTGTTGTATATTGGTAACCTCGCAAGACTTCAAAATG 595
* *******************
consensus_11215#0 GACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACCTTTTCATGTAGCCTCAC 780
consensus_11215#3 GACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACCTTTTCATGTAGCCTCAC 81
consensus_11215#2 GACATTATAGACAGAAAGAAATCCCTGAGACGGTTTGACAACCTTTTCATGTAGCCCCAC 104
consensus_11215#1 GACATTATAGACAGAAAGAAATCC------------------------------------ 619
************************
consensus_11215#0 GTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGT 840
consensus_11215#3 GTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGT 141
consensus_11215#2 GTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGT 164
consensus_11215#1 GTGAAATATTATCAATCTCTCAAACCGAGCTCTTTTTCCCGTTTCTCTTTAAAAATAAGT 679
************************************************************
consensus_11215#0 GCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGG 900
consensus_11215#3 GCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGG 201
consensus_11215#2 GCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGG 224
consensus_11215#1 GCTTTTGCGTAGTCTTGTTGCTGTTTTTTGATAACAGGTCGTTTATATATATAATACTGG 739
************************************************************
consensus_11215#0 GCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCGAACATCAAACAAGTGAAGACT 960
consensus_11215#3 GCTAGTGAAAGGACTGTGTACCCTGTGAGGGC---------------------------- 233
consensus_11215#2 GCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACTCCGAACATCAAACAAGTGAAGACT 284
consensus_11215#1 GCTAGTGAAAGGACTGTGTACCCTGTGAGGGCTACACCGAACATCAAACAAGTGAAGACT 799
********************************
consensus_11215#0 GTACCACGGTGAGCAATCGTAAGAACACGGTTTAAAGTGCTTCTTTGGTAATTCTTCTTT 1020
consensus_11215#3 -----ACGGTGAGCAATCGTAAGAACACGGTTTAAAGTGCTTCTTTGGTAATTCTTCTTT 288
consensus_11215#2 GTACCACGGTGAGCAATCGTAAGAACACGGTTTAAAGTGCTTCTTTGGTAATTCTTCTTT 344
consensus_11215#1 GTACCACGGTGAGCAATCGTAAGAACACGGTTTAAAGTGCTTCTTTGGTAATTCTTCTTT 859
*******************************************************
consensus_11215#0 TGCATACTAGCATAACAGCACGGCAGTTGACACTGTTTGAAAGTTCACTTGTGTGTCCAA 1080
consensus_11215#3 TGCATACTAGCATAACAGCACGGCAGTTGACACTGTTTGAAAGT---------------- 332
consensus_11215#2 TGCATACTAGCATAACAGCACGGCAGTTGACACTGTTTGAAAGT---------------- 388
consensus_11215#1 TGCATACTAGCATAACAGCTCGGCAGTTGACACTGTTTGAAAGTTCACTTGTGT-CCAGA 918
******************* ************************
consensus_11215#0 CATCCAGCCGGCCCAATCACTAGGAATT 1108
consensus_11215#3 ----------------------------
consensus_11215#2 ----------------------------
consensus_11215#1 CAAA------------------------ 922
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||