These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1122#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 388 fasta sequence [CTCGTTGTCGCTGTTCCAAACGATGTTTAGCATCTGATGCTGCATCGATATTACCCACTTTTAAATTATAAGTCACTTCCTCCCACAATCGTCTTGATTCATTTTCTTCTTGGCGAGATCGAGGAAGTACATGTTTTCTTACAGTTGGTAGGTTACGGGTATCAATAAATAACTCACTTTTACCATGAGGCCACTTCGCTAGCATCTTATCGTTCCATTCACCTTCAACAATAAGAAACGGCTTTTTATCATTAGGTCCAAAAACCTCAGCACGTAAAGTATCTCTTTTACCACCATAAAAAGGTTTTGTTCGAAACTCGATATTAGCTAAATAGCCAGTTTTTAGGCATGTGATACTAGTTTTCCCACCCAACTCAATCCATGGAAC] [+] EMBL CD188145 [CTCGTTGTCGCTGTTCCAAACGATGTTTAGCATCTGATGCTGCATCGATATTACCCACTTTTAAATTATAAGTCACTTCCTCCCACAATCGTCTTGATTCATTTTCTTCTTGGCGAGATCGAGGAAGTACATGTTTTCTTACAGTTGGTAGGTTACGGGTATCAATAAATAACTCACTTTTACCATGAGGCCACTTCGCTAGCATCTTATCGTTCCATTCACCTTCAACAATAAGAAACGGCTTTTTATCATTAGGTCCAAAAACCTCAGCACGTAAAGTATCTCTTTTACCACCATAAAAAGGTTTTGTTCGAAACTCGATATTAGCTAAATAGCCAGTTTTTAGGCATGTGATACTAGTTTTCCCACCCAACTCAATCCATGGAAC] consensusID : consensus_1122#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 252 fasta sequence [CCACCCGCAATCGTCTTGATTCATTTTCTTCTTGGCGAGATCGAGGAAGTACATGTTTTCTTACAGTTGGTAGGTTACGGGTATCAATAAATAACTCACTTTTACCGTGAGGCCACTTCGCTCCCACAATCGTCTTGATTCATTTTCTTCTTGGCGAGATCGAGGAAGTACATGTTTTCTTACAGTTGGTAGGTTACGGGTATCAATAAATAACTCACTTTTACCGTGAGGCCACTTCGCTAGCATCTTATC] [-] EMBL CD190779 [CCACCCGCAATCGTCTTGATTCATTTTCTTCTTGGCGAGATCGAGGAAGTACATGTTTTCTTACAGTTGGTAGGTTACGGGTATCAATAAATAACTCACTTTTACCGTGAGGCCACTTCGCTCCCACAATCGTCTTGATTCATTTTCTTCTTGGCGAGATCGAGGAAGTACATGTTTTCTTACAGTTGGTAGGTTACGGGTATCAATAAATAACTCACTTTTACCGTGAGGCCACTTCGCTAGCATCTTATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1122#0 CTCGTTGTCGCTGTTCCAAACGATGTTTAGCATCTGATGCTGCATCGATATTACCCACTT 60 consensus_1122#1 ------------------------------------------------------------ consensus_1122#0 TTAAATTATAAGTCACTTCCTCCCACAATCGTCTTGATTCATTTTCTTCTTGGCGAGATC 120 consensus_1122#1 ------------------CCACCCGCAATCGTCTTGATTCATTTTCTTCTTGGCGAGATC 42 ** *** *********************************** consensus_1122#0 GAGGAAGTACATGTTTTCTTACAGTTGGTAGGTTACGGGTATCAATAAATAACTCACTTT 180 consensus_1122#1 GAGGAAGTACATGTTTTCTTACAGTTGGTAGGTTACGGGTATCAATAAATAACTCACTTT 102 ************************************************************ consensus_1122#0 TACCATGAGGCCACTTCGCTAGCA---TCTTATCGTTCCATTCACCTT----CAACAATA 233 consensus_1122#1 TACCGTGAGGCCACTTCGCTCCCACAATCGTCTTGATTCATTTTCTTCTTGGCGAGATCG 162 **** *************** ** ** * * * * **** * * * * * consensus_1122#0 AGAAACGGCTTTTTATCATTAGGTCCAAAAACCTCAGCACGTAA--AGTATCTCTTTTAC 291 consensus_1122#1 AGGAAGTACATGTTTTCTTACAGTTGGTAGGTTACGGGTATCAATAAATAACTCACTT-T 221 ** ** * * ** ** * ** * * * ** * ** *** ** consensus_1122#0 CACCATAAAAAGGTTTTGTTCGAAACTCGATATTAGCTAAATAGCCAGTTTTTAGGCATG 351 consensus_1122#1 TACCGTGAGGCCACTTCGCTAGCATCTTATC----------------------------- 252 *** * * ** * * * * ** consensus_1122#0 TGATACTAGTTTTCCCACCCAACTCAATCCATGGAAC 388 consensus_1122#1 ------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||