cluster # 1122

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Schistosoma mansoni
cluster # 1122 cluster # 1122 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1122#0 length = 388 sequences # 1

consensus_1122#1 length = 252 sequences # 1

consensusID : consensus_1122#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 388
fasta sequence

                              [CTCGTTGTCGCTGTTCCAAACGATGTTTAGCATCTGATGCTGCATCGATATTACCCACTTTTAAATTATAAGTCACTTCCTCCCACAATCGTCTTGATTCATTTTCTTCTTGGCGAGATCGAGGAAGTACATGTTTTCTTACAGTTGGTAGGTTACGGGTATCAATAAATAACTCACTTTTACCATGAGGCCACTTCGCTAGCATCTTATCGTTCCATTCACCTTCAACAATAAGAAACGGCTTTTTATCATTAGGTCCAAAAACCTCAGCACGTAAAGTATCTCTTTTACCACCATAAAAAGGTTTTGTTCGAAACTCGATATTAGCTAAATAGCCAGTTTTTAGGCATGTGATACTAGTTTTCCCACCCAACTCAATCCATGGAAC]

[+] EMBL CD188145             [CTCGTTGTCGCTGTTCCAAACGATGTTTAGCATCTGATGCTGCATCGATATTACCCACTTTTAAATTATAAGTCACTTCCTCCCACAATCGTCTTGATTCATTTTCTTCTTGGCGAGATCGAGGAAGTACATGTTTTCTTACAGTTGGTAGGTTACGGGTATCAATAAATAACTCACTTTTACCATGAGGCCACTTCGCTAGCATCTTATCGTTCCATTCACCTTCAACAATAAGAAACGGCTTTTTATCATTAGGTCCAAAAACCTCAGCACGTAAAGTATCTCTTTTACCACCATAAAAAGGTTTTGTTCGAAACTCGATATTAGCTAAATAGCCAGTTTTTAGGCATGTGATACTAGTTTTCCCACCCAACTCAATCCATGGAAC]




>consensus_1122#0
CTCGTTGTCGCTGTTCCAAACGATGTTTAGCATCTGATGCTGCATCGATATTACCCACTT
TTAAATTATAAGTCACTTCCTCCCACAATCGTCTTGATTCATTTTCTTCTTGGCGAGATC
GAGGAAGTACATGTTTTCTTACAGTTGGTAGGTTACGGGTATCAATAAATAACTCACTTT
TACCATGAGGCCACTTCGCTAGCATCTTATCGTTCCATTCACCTTCAACAATAAGAAACG
GCTTTTTATCATTAGGTCCAAAAACCTCAGCACGTAAAGTATCTCTTTTACCACCATAAA
AAGGTTTTGTTCGAAACTCGATATTAGCTAAATAGCCAGTTTTTAGGCATGTGATACTAG
TTTTCCCACCCAACTCAATCCATGGAAC

consensusID : consensus_1122#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 252
fasta sequence

                              [CCACCCGCAATCGTCTTGATTCATTTTCTTCTTGGCGAGATCGAGGAAGTACATGTTTTCTTACAGTTGGTAGGTTACGGGTATCAATAAATAACTCACTTTTACCGTGAGGCCACTTCGCTCCCACAATCGTCTTGATTCATTTTCTTCTTGGCGAGATCGAGGAAGTACATGTTTTCTTACAGTTGGTAGGTTACGGGTATCAATAAATAACTCACTTTTACCGTGAGGCCACTTCGCTAGCATCTTATC]

[-] EMBL CD190779             [CCACCCGCAATCGTCTTGATTCATTTTCTTCTTGGCGAGATCGAGGAAGTACATGTTTTCTTACAGTTGGTAGGTTACGGGTATCAATAAATAACTCACTTTTACCGTGAGGCCACTTCGCTCCCACAATCGTCTTGATTCATTTTCTTCTTGGCGAGATCGAGGAAGTACATGTTTTCTTACAGTTGGTAGGTTACGGGTATCAATAAATAACTCACTTTTACCGTGAGGCCACTTCGCTAGCATCTTATC]




>consensus_1122#1
CCACCCGCAATCGTCTTGATTCATTTTCTTCTTGGCGAGATCGAGGAAGTACATGTTTTC
TTACAGTTGGTAGGTTACGGGTATCAATAAATAACTCACTTTTACCGTGAGGCCACTTCG
CTCCCACAATCGTCTTGATTCATTTTCTTCTTGGCGAGATCGAGGAAGTACATGTTTTCT
TACAGTTGGTAGGTTACGGGTATCAATAAATAACTCACTTTTACCGTGAGGCCACTTCGC
TAGCATCTTATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1122#0      CTCGTTGTCGCTGTTCCAAACGATGTTTAGCATCTGATGCTGCATCGATATTACCCACTT 60
consensus_1122#1      ------------------------------------------------------------
                                                                                  

consensus_1122#0      TTAAATTATAAGTCACTTCCTCCCACAATCGTCTTGATTCATTTTCTTCTTGGCGAGATC 120
consensus_1122#1      ------------------CCACCCGCAATCGTCTTGATTCATTTTCTTCTTGGCGAGATC 42
                                        ** *** ***********************************

consensus_1122#0      GAGGAAGTACATGTTTTCTTACAGTTGGTAGGTTACGGGTATCAATAAATAACTCACTTT 180
consensus_1122#1      GAGGAAGTACATGTTTTCTTACAGTTGGTAGGTTACGGGTATCAATAAATAACTCACTTT 102
                      ************************************************************

consensus_1122#0      TACCATGAGGCCACTTCGCTAGCA---TCTTATCGTTCCATTCACCTT----CAACAATA 233
consensus_1122#1      TACCGTGAGGCCACTTCGCTCCCACAATCGTCTTGATTCATTTTCTTCTTGGCGAGATCG 162
                      **** ***************  **   ** * * * * ****  * *     * * *   

consensus_1122#0      AGAAACGGCTTTTTATCATTAGGTCCAAAAACCTCAGCACGTAA--AGTATCTCTTTTAC 291
consensus_1122#1      AGGAAGTACATGTTTTCTTACAGTTGGTAGGTTACGGGTATCAATAAATAACTCACTT-T 221
                      ** **   * * ** ** *   **    *     * *     **  * ** ***  **  

consensus_1122#0      CACCATAAAAAGGTTTTGTTCGAAACTCGATATTAGCTAAATAGCCAGTTTTTAGGCATG 351
consensus_1122#1      TACCGTGAGGCCACTTCGCTAGCATCTTATC----------------------------- 252
                       *** * *      ** * * * * **                                 

consensus_1122#0      TGATACTAGTTTTCCCACCCAACTCAATCCATGGAAC 388
consensus_1122#1      -------------------------------------