These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11237#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 32 consensus length = 2044 fasta sequence [TTTTTTTTTTTTTTTTTTTTGATCATTTTAAAAATGTATTACAATCTTTGGATCACTAATACTTTTTAACTGTAAGCTTGGCATGCCAAAATTCAAACATAAGATTGTTGTTAAGAGAAAGCTAGTCACACATTTTCCACGTCGCACGAAACAATATGGTACCAAATTATACA-TGCGATT-GGTCACTGAACCAAAGAAATGCAATATCAACAAACAAAGACCATAGGCTACAGCCATCAGCTATAGATAAAGTTAAGCAATAAACCGGGCTTGATCAATACGACAATTAGTAAGTAGGCTGAGCAAATGCAGTAGTCATTCCTCGATGAGCGCCACCACGACCTGGATGGGCACCGAAATTCCCACCACC-GCCCCGCTGACCTGTATTGCGTCTTGGACCACCACTTCCACGGCCTCGATTTTCATTTGGAATACGGCCACGTAAACCAACTTTGGGATTTCCATGCTGGAAATTTGAATCAGGTTGTTCGGACTCACGAGAGTTTTCATCCATCGTGCGGTCAGTCTTTTTAGAGTTTATATTATCTACGACTGCTGGTCGATTAAAACCTGTATGTACTTGTCCGGCTCTTCGAACAGAATCCGCATATGAAATTGGTTTGTGTACATTGATATTTGTCTCATGCTCATCCTGAGATAATATTGATTTAAAAGATGTAGTTTGATTGACATTGTCCGGTGACAAAGATGATGAACTTCTTCCGAATAATTCAATCTTTGAGTGTTCAACTTCTGGAATATTTAAAACA-TATTGT-TGGTCTATCCTTGTAACCAAAGAACGGTCAATGTTATCTTCAATACTATGATTACTGAAA-CAAGAAACACTCGTTTTATTAGGTAATTGATTAACAGGCATAACGTCTTCATAGTTTGTTGGAGGTTCGGCCGTGATATGCGAATGGTCGACTCTAGAAGCCTGGATAAAGTTGAACGTACTATTGAGTGGTCGGATGACTTGATCCACCGGTTCATCTGAAGTTGTAACAG-AAGAGTGCCCACCAATTGTTGTGAATTCATTATAGGGAACAGTAGGCACATCAGTGGGA-CCTGATAGGCCGGTAGGTGAGTTAGTTTCCGAATCTGCAACAACTTGTGTTGGTTCTGGTACAACCGTTGTGCTGCTATCACTAATAAGACCCATCGATTGCTGGACGAGTGGGTTAGACAGTAGTCGGAAGCACAAATTGCGAATGTCCTTGTAAGTTGTGTGCTTCTTTCGAAAGTCCTCTAAATCGTTTGACAGTGGGACAGGTACTGAATTCCCATTCATCAAATTGAAGGTGCTTGTAGCAACAGTCTTAAGATCTTCTCGTGCACGTAAGAAATTGGGAACAGAAGATAGAGCTGAAGAACTAACTCCAGGCCAATTATCCACTACGGG-CGGTGTTAATATATCTCGTACGGCGTCTAACAACTTAAGGTTGTTTTCTGATGAAGATTTTGTGACGGCTGAACGGACTGTCGGAATGTCCAAAGAAGCAAAAAAACGTTCCAAACACATGTGGATACTTAAATACGAAAGAGTATATTTCTCATGTTCAGCTTCCAGTTGGGACATTTGCTTACCAACGACTGACTCCATATTCGACAAGAGATCCTTCGTCTGTGCCACAATCTC-TTGTACAAACGAGATGTTCTGAACCACACCATCATAGCTTTCGACGGCTTTCTTTTGTTCATCTTTCAGGACTTCACCTTTCTGCAGTTTTTCGCGATAACCATCTAGCTTACT---CTTTCTTTTTCCAAGATTCCTTTGTCTTCGCTCAAGATTCGACAAGAACTGTCTAACTAAC-TCACATGGAGAATCACACTCAAGCATGCCTTTAACGCCGGTCACAAAACAGTTCAAAAATTCCAATAGTCCGTTCAGCCGTCACAAAATCTTCATCAGAAAACAACCTTAAGTTGTTAGACGCCGTACGAGATATATTAACACCGCCCGTAGTGGATAATTGGCCTGGAGTTAGTTCTTCAGCTCTATCTTCTGTTCCCAATTTCTTACGTGCACGAGAAGATCTTAAGA] [+] EMBL AI395418 [TTTTTTTTTTTTTTTTTTTTGATCATTTTAAAAATGTATTACAATCTTTGGATCACTAATACTTTTTAACTGTAAGCTTGGCATGCCAAAATTCAAACATAAGATTGTTGTTAAGAGAAAGCTAGTCACACATTTTCCACGTCGCACGAAACAATATGGTACCAAATTATACATTGCGATT GGTCACTGAACCAAAGAAATGCAATATCAACAAACAAAGACCATAGGCTACAGCCATCAGCTATAGATAAAGTTAAGCAATAAACCGGGCTTGATCAATACGACAATTAGTAAGTAGGCTGAGCAAATGCAGTAGTCATTCCTCGATGAGCGCCACCACGACCTGGATGGGCACCGAAATTCCCACCACCGGCCCCGCTGACCTGTATTGCGTCTTGGGCCACCACTTCCAC ] [+] EMBL SMT14488 [ AAAAATGTATTACAATCTTTGGNTCACTAATACTTTTTAACTGTAAACTTGGCATGCCAAAATTCAAACATAAGATTGTNGTTAAGAGAAAGCTAGTCACACATTTNCCACGTNGCACGAAACAATATGGTACCAAATTATACATTGCGATT GGTCACTGAACCAAAGAAATGCAATATCAACAAACAAAGACCATAGGNTACAGCCATCAGCTATAGATAAAGTTAAGCAATAAACCGGGCTTGATCAATACGACAATTAGTAAGTNGGCTGAGCAAATGCAGTAGTCATTCCTCGATGAGCGCCACCACGACCTGGATGGGCACCGAANTTCCCA ] [+] EMBL SMT14634 [ AAATTCAAACATAAGATTGTTGTTAAGAGAAAGCTAGTCACACATTTTCCACGTCGCACGAAACAATATGGTACCAAATTATACATTGCGATT GGTCACTGAACCAAAGAAATGCAATATCAACAAACAAAGACCATAGGCCACAGCCATCAGCTATAGATAAAGTTAAGCAATAAACCG ] [-] EMBL CD137577 [ CAAACATAAGATTGTTGTTAAGAGAAAGCTAGTCACACATTTTCCACGTCGCACGAAACAATATGGTACCAAATTATACATTGCGATT GGTCACTGAACCCAAGAAATGCAATATCAACAAACAAAGACCATAGGCTACAGCCATCAGCTATAGATAAAGTTAAGCAATAAACCGGGCTTGATCAATACGACAATTAGTAAGTAGGCTGAGCAAATGCAGTAGTCATTCCTCGATGAGCGCCACCACGACCTGGATGGGCACCGAAATTCCCACCACC GCCCCGCTGACCTGTATTGCGTCTTGGACCACCACTTCCACGGCCTCGATTTTCATTTGGAATACGGCCACGTAAACCAACTTTGGGATTTCCATGCTGGAAATTTGAATCAGGTTGTTCGGACTCACGAGAGTTTTCATCCATCGTGCGGTCAGTCTTTTTAGAGTTTATATTATCTACGACTGCTGGTCGATTAAAACCT ] [-] EMBL CD145395 [ AGCTAGTCACACATTTTCCACGTCGCACGAACCAATATGGTACCAAATTATACA TGCGATTGGGTCACTGACCCAAAGAAATGCAATATCAACAAACAAGNACCATAGGCTACAGCCATCAGCTATAGATAAAGTTAAGCAATAAACCGGGCTTGATCAATACGACAATTAGTAAGTAGGCTGAGCAAATGCAGTAGTCATTCCTCGATGAGCGCCACCACGACCTGGATGGGCACCGAAATTCCCACCACC GCCCCGCTGACCTGTATTGCGTCTTGGACCACCACTTCCACGGCCTCGATTTTCATTTGGAATACGGCCACGTAAACCAACTTTGGGATTTCCATGCTGGAAATTTGAATCAGGTTGTTCGGACTCACGAGAGTTTTCATCCATCGTGCGGTCAGTCTTTTTAGAGTTTATATTATCTACGACTGCTGGTCGATTAAAACCTGTATGTACTTGTCCGGCTCTTCGAACAGAATCCGCATATGAAATTGGTTTGTGTACATTGATATTTGTCTCATGCTCATCCTGAGATAATATTGATTTAAAAGATGTAGTTTGATTGACATTGTCCGGTGACAAAGATGATGAACTTCTTCCGAATAATTCAATCTTTGAGTGTTCAACTTCTGGAATATTTAAAACA T ] [+] EMBL CD064272 [ acCGTCGCA GAAACAATATGGTACCAAATTAT CATTGCGA T GGTCACTGAACCAAAGAAATGCAATATCAACAAACAAAGACCATAGGCTACAGCCATCAGCTATAGATAAAGTTGAGCAATAAACCGGGCTTGATCAATACGACAATTAGTAAGTAGGCTGAGCAAATGCAGTAGTCATTCCTCGATGAGCGCCACCACGACCTGGATGGGCACCGAAATTCCCACCACC GC ] [-] EMBL CD096619 [ TGGTACCAAATTATACATTGCGATT GGTCACTGAACCAAAGAAATGCAATATCAACAAACAAAGACCATAGGCTACAGCCATCAGCTATAGATAAAGTTAAGCAATAAACCGGGCTTGATCAATACGACAATTAGTAAGTAGGCTGAGCAAATGCAGTAGTCATTCCTCGAT ] [-] EMBL CD170973 [ GAAATGCAATATCAACAAACAAAGACCATAGGCTACAGCCATCAGCTATAGATAAAGTTAAGCAATAAACCGGGCTTGATCAATACGACAATTAGTAAGTAGGCTGAGCAAATGCAGTAGTCATTCCTCGATGAGCGCCACCACGACCTGGATGGGCATCGAAATTCCCACCACC ] [+] EMBL CD163925 [ GTCTTGGACCACCACTTCCACGGCCTCGATTTTCATTTGGAATACGGCCACGTAAACCAACTTTGGGATTTCCATGCTGGAAATTTGAATCAGGTTGTTCGGACTCACGAGAGTTTTCATCCATCGTGCGGTCAGTCTTTTTAGAGTTTATATTATCTACGACTGCTGGTCGATTAAAACCTGTATGTACTTGTCCGGCTCTTCGAACAGAATCCGCATATGAAATTGGTTTGTGTACATTGATATTTGTCTCATGCTCATCCTGAGATAATATTGATTTAAAAGATGTAGTTTGATTGACATTGTCCGGTGACAAAGATGATGAACTTCTTCCGAATAATTCAATCTTTGAGTGTTCAACTTCTGGAATATTTAAAACA TATTGT TGGTCTATCCTTGTAACCAAAGAACGGTCAATGTTATCTTCAATACTATGATTACTGAAA CACCAAACACT ] [+] EMBL CD164014 [ GTCTTGGACCACCACTTCCACGGCCTCGATTTTCATTTGGAATACGGCCACGTAAACCAACTTTGGGATTTCCATGCTGGAAATTTGAATCAGGTTGTTCGGACTCACGAGAGTTTTCATCCATCGTGCGGTCAGTCTTTTTAGAGTTTATATTATCTACGACTGCTGGTCGATTAAAACCTGTATGTACTTGTCCGGCTCTTCGAACAGAATCCGCATATGAAATTGGTTTGTGTACATTGATATTTGTCGCATGCTCATCCTGAGATAATATTGATTTAAAAGATGTAGTTTGATTGACATTGTCCGGTGACAAAGATGATGAACTTCTTCCGAATAATTCAATCTTTGAGTGTTCAACTTCTGGAATATTTAAAACA TATTGT TGGTCTATCCTTGTGACCAAAGAACGGTCAATGTTATCTTCAATACTATGACTACTGAAA CAAGACACACTCGTTTTATTATGTAATTGATTAACAGGCt ] [-] EMBL CD163825 [ TTCA TTGGAATACGGCCACGTAAACCAAC TTGGGATTTCCATGCTGGAAATNTGAATCAGGTTGTTCGGACTCACGAGAGTTTTCATCCATCGTGCGGTCAGTCTTTTTAGAGTTTATATTATCTACGACTGCTGGTCGATTAAAACCTGTATGTACTTGTCCGGCTCTTCGAACAGAATCCGCATATGAAATTGGTTTGTGTACATTGATATTTGTCTCATGCTCATCCTGAGATAATATTGATTTAAAAGATGTAGTTTGATTGACATTGTCCGGTGACAAAGATGATGAACTTCTTCCGAATAATTCAATCTTTGAGTGTTCAACTTCTGGAATATTTAAAACA TATTGT TGGTCTATCCTTGTAACCAAAGAACGGTCAATGTTATCTTCAATACTATGATTACTGAAA CAAGAAACACTCGTTCTATTAGGTAATTGATTAACAGGCATAACGTCCTCATAGTTTGTTGGAGGTTCGGCCGTGATATGCGAATGGTCGACTCTAGAAGCCTGGATAAAGTTGAACGTACTATTGAGTGGTCGGATGACTTGATCCAC ] [+] EMBL BG930822 [ gTCTTCGAACAGAATCCGCATATGAAATTGGTTTGTGTACATTGATATTTGTCTCATGCTCATCCTGAGATAATATTGATTTAAAAGATGTAGTTTGATTGACATTGTCCGGTGACAAAGATGATGAACTTCTTCCGAATAATTCAATCTTTGAGTGTTCAACTTCTGGAATATTTAAAACA TATTGT TGGTCTATCCTTGTAACCAAAGAACGGTCAATGTTATCTTCAATACTATGATTACTGAAA CAAGAAACACTCGTTTTATTAGGTAATTGATTAACAGGCATAACGTCTTCATAGTTTGTTGGAGGTTCGGCCGTGATATGCGAATGGTCGACTCTAGAAGCCTGGATAAAGTTGAACGTACTATTGAGTGGTCGG ] [+] EMBL CD190067 [ GATTTAAAAGGTGTAGTTTGATTGACTTTGCCCGGAGACAAAGATGATGAACTTCTTCCAAATAATTCAATCTTTGAGTGTTCAACTTCTGGAATATTTAAAACAGTGTGGTGGGGCCTATCCTTGTAACCAAAGAACGGTCAATGTTATCTTCAATACTATGATTACTGAAA CAAGAAACACTCGTTTTATTAGGTAATTGATTAACAGGCATAACGTCTTCATAGTTTGTTGGAGGTTCGGCCGTGATATGCGAATGGTCGACTCTAGAAGCCTGGATAAAGTTGAACGTACTATTGAGTGGTCGGATGACTTGATCCACCGGTTCATCTGAAGTTGTAACAG AAGAGTGCCCACCAATTGTTGTGAATTCATTATAGGGAACAGTAGGCACATCAGTGGGACCCTGATAGGCCGGTAGGTGAGTTAGTTT ] [+] EMBL CD159267 [ AACGGTCAATGTTATCTTCAATACTATGATTACTGAAA CAAGAAACACTCGTTTTATTAGGTAATTGATTAACAGGCATAACGTCTTCATAGTTTGTTGGAGGTTCGGCCGTGATATGCGAATGGTCGACTCTAGAAGCCTGGATAAAGTTGAACGTACTATTGAGTGGTCGGATGACTTGATCCACCGGTTCATCTGAAGTTGTAACAG AAGAGTGCCCACCAATTGTTGTGAATTCATTATAGGGAACAGTAGGCACATCAGTGGGA CCTGATAGGCCGGTAGGTGAGTTAGTTTCCGAATCTGCAACAACTTGTGTTGGTTCTGGTACAACCGTTGTGCTGCTATCACTAATAAGACCCATCGATTGCTGGACGAGTGGGTTAGACAGTAGTCGGAAGCACAAATTGCGAATGTCCTTGTAAGTTGTGTGCTTCTTTCG AAGTCCTCTAAATCGTTTGACAGTGGGACAGGTACTGAATTCCCATTCATCAAATTGAAGGTGCTTGTAGCAACAGTCTTAAGATCTTCTCGTGCACGTAAGAAATTGGGAACAGAAGATAGAGCTGAAGAACTAACTCCAGGCCAATTATCCACTACGGGNCGGTGTT ATATA ] [-] EMBL BF936829 [ CAATACTATGA TACTGAAACCAAGAAACACTCG TTTATTAGGTAATTGATTAACAGGCATAACGTCTTCATAGTTTGTTGGAGGTTCGGCCGTGATATGCGAATGGTCGACTCTAGAAGCTGGGATAAAGTTGAACGTACTATTGAGTGGTCGGATGACTTGATCCACCGGTTCATCTGAAGTTGTAACAGAAAGAGTGCCCACCAATTGTTGTGAATTCATTATAGGGAACAGTAGGCACATCAGTGGGA CCTGATAGGCCGGTAGGTGAGTTAGTTTCCGAATCTGCAACAACTTGTGTTGGTTCTGGTACAACCGTTGTGCTGCTATCACTAATAAGACCCATCGATTGCTGGACGAGTGGGTTAGACAGTAGTCGGAAGCACAAATTGCGAATGTCCTTGTAAGTTGTGTGCTTCTTTCGAAAGTCCTCTAAATCGTTTGACAGTGGGACAGGTACTGAATTCCCATTCATCAAATTGAAGGTGCTTGTAGCAACAGTCTTAAGATCTTCTCGTGCACGTAAGAAATTGGGAACAGAAGATAGAGCTGAAGAACTAACTCCAGGCCAATTAT ] [+] EMBL CD117156 [ ACAGGCATAACGTCTTCATAGTTTGTTGGAGGTTCGGCCGTGATATGCGAATGGTCGACTCTAGAAGCCTGGATAAAGTTGAACGTACTATTGAGTGGTCGGATGACTTGATCCACCGGTTCATCTGAAGTTGTAACAG AAGAGTGCCCACCAATTGTTGTGAATTCATTATAGGGAACAGTAGGCACATCAGTGGGA CCTGATAGGCCGGTAGGTGAGTTAGTTTCCGAATCTGCAACAA ] [+] EMBL CD117254 [ ACAGGCATAACGTCTTCATAGTTTGTTGGAGGTTCGGCCGTGATATGCGAATGGTCGACTCTAGAAGCCTGGATAAAGTTGAACGTACTATTGAGTGGTCGGATGACTTGATCCACCGGTTCATCTGAAGTTGTAACAG AAGAGTGCCCACCAATTGTTGTGAATTCATTATAGGGAACAGTAGGCACATCAGTGGGA CCTGATAGGCCGGTAGGTGAGTTAGTTTCCGAATCTGCAACAA ] [+] EMBL CD117157 [ ACAGGCATAACGTCTTCATAGTTTGTTGGAGGTTCGGCCGTGATATGCGAATGGTCGACTCTAGAAGCCTGGATAAAGTTGAACGTACTATTGAGTGGTCGGATGACTTGATCCACCGGTTCATCTGAAGTTGTAACAG AAGAGTGCCCACCAATTGTTGTGAATTCATTATAGGGAACAGTAGGCACATCAGTGGGA CCTGATAGGCCGGTAGGTGAGTTAGTTTCCGAATCTGCAACAA ] [+] EMBL CD120844 [ GAGGTTCGGCCGTGATATGCGAATGGTCGACTCTAGAAGCCTGGATAAAGTTGAACGTACTATTGAGTGGTCGGATGACTTGATCCACCGGTTCATCTGAAGTTGTAACAG AAGAGTGCCCACCAATTGTTGTGAATTCATTATAGGGAACAGTAGGCACATCAGTGGGA CCTGATAGGCCGGTAGGTGAGTTAGTTTCCGAATCTGCAACAACTTGTGTTGGTTCTGGTACAACCGTTGTGCTGCTATCACTAATAAGACCCATCGATTGCTGGACGAGTGGGTTAGACAGTAGTCGGAAGCACAAATTGCGAATGTCCTTGCAAGTTGTGTGCTTCTTTCGAAAGTCCTCTAAATCGTTTGACAGTGGGACAGGTACTGAATTCCCATTCATCAAATTGAAGGT ] [+] EMBL CD094729 [ TGAGTTAGTTTCCGAATCTGCAACAACTTGTGTTGGTTCTGGTACAACCGTTGTGCTGCTATCACTGATAAGACCCATCGATTGCTGGACGAGTGGGTTAGACAGTAGTCGGAAGCACAAATTGCGAATGTCCTTGTAAGTTGTGTGCTTCTTTCGAAAGTCCTCTAAATCGTTTGACAGTGGGACAGGTACTGAATTCCCATTCATCAAATTGAAGGTGCTTGTAGCAACAGTCTTAAGATCTTCTCGTGCACGTAAGAAATTGGGAACAGAAGATAGAGCTGAAGAACTAACTCCAGGCCAATTATCCACTACGGG CGGCGTTAATATATCTCGTACGGCGTCTAACAACTTAAGGTTGTTTTCTGATGAAGATTTTGTGACGGCTGAACGGACTGTCGGAATGTCCAAAGAAGCAAAAAAACGTTCCAAACACATGTGGATACTTAAATACGAAAGAGTATATTTCTCATGTTCAGCTTCCAGTTGGGACATTTGCTTACCAACGACTGACTCCATATTCGACAAGAGATCCTTCG ] [+] EMBL CD200897 [ GAATCTGCAACAACTTGTGTTGGTTCTGGTACAACCGTTGTGCTGCTATCACTAATAAGACCCATCGATTGCTGGACGAGTGGGTTAAACAGTAGTCGGAAGCACAAATTGCGAATGTCCTTGTAAGTTGTGTGCTTCTTTCGAAAGTCCTCTAAATCGTTTGACAGTGGGACAGGTACTGAATTCCCATTCATCAAATTGAAGGTGCTTGTAGCAACAGTCTTAAGATCTTCTCGTGCACGTAAGAAATTGGGAACAGAAGATAGAGCTGAAGAACTAACTCCAGGCCAATTATCCACTACGGG CGGTGTTAATATATCTCGCACGGCGTCTAACAACTTAAGGTTGTTTTCTGATGAAGATTTTGTGACGGCTGAACGGACTGTCGGAATGTCCAAAGAAGCAAAAAAACGTTCCAAg ] [-] EMBL CD163004 [ GCTTCTTTCGANAGTCCTCTAAATCGTTTGACAGTGGGACAGGTACTGAATTCCCATTCATCAAATTGAAGGTGCTTGTAGCAACAGTCTTAAGATCTTCTCGTGCACGTAAGAAATTGGGAACAGAAGATAGAGCTGAAGAACTAACTCCAGGCCAATTATCCACTACGGG CGGCGTTAATATATCTCGTACGGCGTCTAACAACTTAAGGTTGTTTTCTGATGAAGATTTTGTGACGGCTGAACGGACTGTCGGAATGTCCAAAGAAGCAAAAAAACGTTCCAAACACATGTGGATACTTAAATACGAAAGAGTATATTTCTCATGTTCAGCTTCCAGTTGGGACATTTGCTTACCAACGACTGACTCCATATTCGACAAGAGATCCTTCGTCTGTGCCACAATCTC TTGTACAAACGAGATGTTCTGAACCACACCATCATAGCTTTCGACGGCTTTCTTTTGTTCATCTTTCAGGACTTCACCTTTCTGCAGTTTTTCGCGATAACCATCTAGCTTACT CTTTCTTTTTCCAAGATTCCTTTGTCTTCGCTCAAGATCCGACAAGAACTGTCTAACTAAC TCACATGGA ] [+] EMBL CD155155 [ GTTAATATATCTCGTACGGCGTCTAACAACTTAAGGTTGTTTTCTGACGAAGATTTTGTGACGGCTGAACGGACTGTCGGAATGTCCAAAGAAGCAAAAAAACGTTCCAAACACATGTGGATACTTAAATACGAAAGAGTATATTTCTCATGTTCAGCTTCCAGTTGGGACATTTGCTTACCAAC ] [-] EMBL CD170737 [ GTTAATATATCTCGTACGGCGTCTAACAACTTAAGCTTGTTTTCTGATGAAGATTTTGTGACGGCTGAACGGACTGTCGGAATGTCCAAAGAAGCAAAAAAACGTTCCAAACACATGTGGATACTTAAATACGAAAGAGTATATTTCTCATGTTCAGCTTCCAGTTGGGACATTTGCTTACCAACGACTGACTCCATATTCGACAAGAGATCCTTCGTCTGTGCCACAATCTC TTGTACAAACGAGATGTTCTGAACCACACCATCATAGCTTTCGACGGCTTTCTTTTGTTCATCTTTCAGGACTTCACCTTTCTGCAGTTTTTCGCGATAACCATCTAGCTTACT CTTTCTTTTTCCAAGATTCCTTTGTCTTCGCTCAAGATTCGACAAGAACTGTCTAACCAACATCACATGGAG ] [-] EMBL CD095033 [ ACTTAAGGTTGTTTTCTGATGAAGATTTTGTGACGGCTGAACGGACTGTCGGAATGTCCAAAGAAGCAAAAAAACGTTCCAAACACATGTGGATACTTAAATACGAAAGAGTATATTTCTCATGTTCAGCTTCCAGTTGGGACATTTGCTTACCAACGACTGACTCCATATTCGACAAGAGATCCTTCGTCTGTGCCACAATCTC TTGTACAAACGAGATGTTCTGAACCACACCATCATAGCTTTCGACGGCTTTCTTTTGTTCATCTTTCAGGACTTCACCTTTCTGCAGTTTTTCGCGATAACCATCTAGCTTACTCTACTTTCTTTTTCCAAGATTCCTTTGTCTTCGCTCAAGATTCGACAAGAACTGTCTAACTAAC TCACATGGAGAATCACACTCAAGCA ] [+] EMBL CD123187 [ GAAGATTTTGTGACGGCTGAACGGACTGTCGGAATGTCCAAAGAAGCAAAAAAACGTTCCAAACACATGTGGATGCTTAAATACGAAAGAGTATATTTCTCATGTTCAGCTTCCAGTTGGGACATTTGCTTACCAACGACTGACTCCATATTCGGCAAGAGATCCTTCGTCTGTGCCACAATCTC TTGTACAAACGAGATGTTCTGAACCACACCATCATAGCTTTCGACGGCTTTCTTTTGTTCATCTTTCAGGACTTCACCTTTCTGCAGTTTTTCGCGATAACCATCTAGCTTACT CTTTCTTTTTCCAAGATTCCTTTGTCTTCGCTCAAGATTCCACAAGAACTGTCTAACCAAC TCACATGGAGAATCACACTCAAGCATGCCTTTAACGCCGGTCACAAAACAGTTCAAAAATTCC ] [-] EMBL CD170314 [ TCGGAATGTCCAAAGAAGCAAAAAAACGTTCCAAACACATGTGGATACTTAAATACGAAAGAGTATATTTCTCATGTTCAGCTTCCAGTTGGGACATTTGCTTACCAACGACTGACTCCATATTCGACAAGAGATCCTTCGTCTGTGCCACAATCTC TTGTACAAACGAGATGTTCTGAACCACACCATCATAGCTTTCGACGGCTTTCTTTTGTTCATCTTTCAGGACTTCACCTTTCTGCAGTTTTTCGCGATAACCATCTAGCTTACT CTTTCTTTTTCCAAGATTCCTTTGTCTTCGCTCAAGATTCGACAAGAACTGTCTAACTAAC TCACATGGAGAATCA ] [-] EMBL CD158722 [ TCGGAATGTCCAAAGAAGC AAAAAACGTTCCAAACACATGTGGATACTTAAATACGAAAGAGTATATTTCTCATGTTCAGCTTCCAGTTGGGACATTTGCTTACCAACGACTGACTCCATA ] [-] EMBL SMT14489 [ CATGTGGATACTTAAATACGAAAGAGTATATTTCTCATGTTCAGCTTCCAGTTGGGACATTTGCTTACCAACGACTGACTCCATATTCGACAAGAGATCCTTCGTCTGTGCCACAATCTC TTGTACAAACGAGATGTTCTGAACCACACCATCATAGCTTTCGACGGCTTTCTTTTGTTCATCTTTCAGGACTTCACCTTTCTGCAGTTTTTCGCGATAACCATCTAGCTTACT CTTTCTTTTTCCAAGATTCCTTTGTCTTCGCTCAAGATTCGACAAGAACTGTCTAACCAAC TCACATGGAGA ] [-] EMBL SMT14486 [ GACTGACTCCATATTCGACAAGAGATCCTTCGTCTGTGCCACAATCTCTTTGTACAAACGAGATGTTCTGAACCACACCATCATAGCTTTCGACGGCTTTCTTTTGTTCATCTTTCAGGACTTCACCTTTCTGCAGTTTTTCGCGATAACCATCTAGCTTACT CTTTCTTTTTCCAAGATTCCTTTGTCTTCGCTCAAGATTCGACAAGAACTGTCTAACTAAC TCACATGGAGAATCACACTCAAGCATGCCTTTAACGCC ] [-] EMBL CD159168 [ ACTCCATATTCGACAAGAGATCCTTCGTCTGTGCCACAATCTC TTGTACAAACGAGATGTTCTGAACCACACCATCATAGCTTTCGACGGCTTTCTTTTGTTCATCTTTCAGGACTTCACCTTTCTGCAGTTTTTCGCGATAACCATCTAGCTTACT CTTTCTTTTTCCAAGATTCCTTTGTCTTCGCTCAAGATTCGACAAGAACTGTCTAACTAAC TCACATGGAG ] [-] EMBL CD159079 [ ACTCCATATTCGACAAGAGATCCTTCGTCTGTGCCACAATCTC TTGTACAAACGAGATGTTCTGAACCACACCATCATAGCTTTCGACGGCTTTCTTTTGTTCATCTTTCAGGACTTCACCTTTCTGCAGTTTTTCGCGATAACCATCTAGCTTACT CTTTCTTTTTCCAAGATTCCTTTGTCTTCGCTCAAGATTCGACAAGAACTGTCTAACCAAC TCACATGGAGAATCACACTCAAGCATGCCTTTAACGCCGGTCAC AAACAGTACAAAAATTCCAATAGTCCGTTCAGCCGTCACAAAATCTTCATCAGAAAACAACCTTAAGTTGTTAGACGCCGTACGAGATATATTAACACCGCCCGTAGTGGATAATTGGCCTGGAGTTAGTTCTTCAGCTCTATCTTCTGTTCCCAATTTCTTACGTGCACGAGAAGATCTTAAGA] consensusID : consensus_11237#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 491 fasta sequence [AATGGTCGACTCTAGAAGCCTGGATAAAGTTGAACGTACTATTGAGTGGTCGGATGACTTGATCCACCGGTTCATCTGAAGTTGTAACAGAAGAGTGCCCACCAATTGTTGTGAATTCATTATAGGGAACAGTAGGCACATCAGTGGGACCTGATAGGCCGGTAGGTGAGTTAGTTTCCGAATCTGCAACA-ACTTGTGTTGGTTCTGGTACAACCGTTGTGCTGCTATCACTAATAAGACCCATCGATTGCTGGACGAGTGGGTTAGACAGTAGTCGGAAGCACAAATTGCGAATGTCCTTGTAAGTTGTGTGCTTCTTTCGAAAGTCCTCTAAATCGTTTGACAGTGGGACAGGT-ACTGAATTCCCATTCATCAAATTGAAGGTGCTTGTAGCAACAGTCTTAAGATCTTCTCGTGCACGTAAGAAATTGGGAACAGAAGATAGAGCTGAAGAACTCCTCGTGCCGATTCTGGCCTCGAGGCCAATTCCC] [-] EMBL CD083858 [AATGGTCGACTCTAGAAGCCTGGATAAAGTTGAACGTACTATTGAGTGGTCGGATGACTTGATCCACCGGTTCATCTGAAGTTGTAACAGAAGAGTGCCCACCAATTGTTGTGAATTCATTATAGGGAACAGTAGGCACATCAGTGGGACCTGATAGGCCGGTAGGTGAGTTAGTTTCCGAATCTGCAACA ACTTGTGTTGGTTCTGGTACAACCGTTGTGCTGCTATCACTAATAAGACCCATCGATTGCTGGACGAGTGGGTTAGACAGTAGTCGGAAGCACAAATTGCGAATGTCCTTGTAAGTTGTGTGCTTCTTTCGAAAGTCCTCTAAATCGTTTGACAGTGGGACAGGT ACTGAATTCCCATTCATCAAATTGAAGGTGCTTGTAGCAACAGTCTTAAGATCTTCTCGTGCACGTAAGAAATTGGGAACAGAAGATAGAGCTGAAGAACTCCTCGTGCCGATTCTGGCCTCGAGGCCAATTCCC] [+] EMBL CD183301 [ AACGTACTATTGAGTGGTCGGATGACTTGATCCACCGGTTCATCTGAAGTTGTAACAGAAGAGTGCCCACCAATTGTTGTGAATTCATTATAGGGAACAGTAGGCACATCAGTGGGACCTGATAGGCCGGTAGGTGAGTTAGTTTCCGAATCTGCAACA ACTTGTGTTGGTTCTGGTACAACCGTTGTGCTGCTATCACTAATAAGACCCATCGATTGCTGGACGAGTGGGTTAGACAGTAGTCGGAAGCACAAATTGCGAATGTCCTTGTAAGTTGTGTGCTTCTTTCGAAAGTCCTCTAAATCGTTTGACAGTGGGACAGGT ACTGAATTCCCATTCATCAAATTGAAGGTGCTTGTAGCAACAGTCTTAAGATCTTCTCGTGCACGTAAGAAATTGGGAACAGAAGATAGAGCTGA ] [+] EMBL CD190128 [ AACGTACTATTGAGTGGTCGGATGACTTGATCCACCGGTTCATCTGAAGTTGTAACAGAAGAGTGCCCACCAATTGTTGTGAATTCATTATAGGGAACAGTAGGCACATCAGTGGGACCTGATAGGCCGGTAGGTGAGTTAGTTTCCGAATCTGCAACA ACTTGTGTTGGTTCTGGTACAACCGTTGTGCTGCTATCACTAATAAGACCCATCGATTGCTGGACGAGTGGGTTAGACAGTAGTCGGAAGCACAAATTGCGAATGTCCTTGTAAGTTGTGTGCTTCTTTCGAAAGTCCTCTAAATCGTTTGACAGTGGGACAGGT ACTGAATTCCCATTCATCAAATTGAAGGTGCTTGTAGCAACAGTCTTAAGATCTTCTCGTGCACGTAAGAAATTGGGAACAGAAGATAGAGCTGA ] [+] EMBL CD190104 [ AACGTACTATTGAGTGGTCGGATGACTTGATCCACCGGTTCATCTGAAGTCGTAACAGAAGAGTGCCCACCAATTGTTGTGAATTCATTATAGGGAACAGTAGGCACATCAGTGGGACCTGATAGGCCGGTAGGTGAGTTAGTTTCCGAATCTGCAACA ACTTGTGTTGGTTCTGGTACAACCGTTGTGCTGCTATCACTAATAAGACCCATCGATTGCTGGACGAGTGGGTTAGACAGTAGTCGGAAGCACAAATTGCGAATGTCCTTGTAAGTTGTGTGCTTCTTTCGAAAGTCCTCTAAATCGTTTGACAGTGGGACAGGT ACTGAATTCCCATTCATCAAATTGAAGGTGCTTGTAGCAACAGTCTTAAGATCTTCTCGTGCACGTAAGAAATTGGGAACAGAAGATAGAGCTGA ] [+] EMBL CD120767 [ CAGTAGGCACATCAGTGGGACCTGACAGGCCGGTAGGTGAGTTAGTTTCCGAATCTGCAACA GCTTGTGTTGGTTCTGGTACAACCGTTGTGCTGCTATCACTAATAAGACCCATCGATTGCTGGACGAGTGGGTTAGACAGTAGTCGGAAGCACAAATTGCGAATGTCCTTGTAAGTTGTGTGCTTCTTTCGAAAGTCCTCTAAATCGTTTGACAGTGGGACAGGT ACTGAATT ] [-] EMBL CD090894 [ AGTAGGCACATCAGTGGGACCTGATAGGCCGGTAGGTGAGTTAGTTTCCGAATCTGCAACA ACTTGTGTTGGTTCTGGTACAACCGTTGTGCTGCTATCACTAATAAGACCCATCGATTGCTGNACGAGTGGGTTAGACAGTAGTCGGAAGCACAAATTGCGAATGTCCTTGTAAGTTGTGTGCTTCTTTCGAAAGTCCTCTAAATCGTTTGACAGTGGGACAGGTNACTGAATTC ] [+] EMBL CD183060 [ CGGTAGGTGAGTTAGTTTCCGAATCTGCAACA ACTTGTGTTGGTTCTGGTACAACCGTTGTGCTGCTATCACTAATAAGACCCATCGATTGCTGGACGAGTGGGTTAGACAGTAGTCGGAAGCACAAATTGCGAATGTCCTTGTAAGTTGTGTGCTTCTTTCGAAAGTCCTCTAAATCGTTTGACAGTGGGACAGGT ACTGAATTCCCATTCAT ] [+] EMBL CD200813 [ TTTCCAAATCTGCAACATTCTTGTGTTGGTTCTGG ACAACCGTTGTGCTGCTATCACTAATAAGACCCATCGATTGCTGGACGAGTGGGTTACACAGTAGTCGGAAGCACAAATTGCGAATGTCCTTGTAAGTTGTGCGCTTCTTTCGAAAGTCCTCTAATTCGTTTGACAGTGGGACAGGT ACTGAATTCCCATCCATCAAATTGAAGGT ] [-] EMBL CD188849 [ GTGCTGCTATCACTAATAAGACCCATCGATTGCTGGACGAGTGGGTTAGACAGTAGTCGGAAGCACAAATTGCGAATGTCCTTGTAAGTTGTGTGCTTCTTTCGAAAGTCCTCTAAATCGTTTGACAGTGGGACAGGT ACTGAATTCCCATTCATCAAATTGAAGGTGCTTGTAGCAACAGTCTTAAGATCTTCTCGTGCACGTAAGAAATTGGGAACAGAAGATAGAGCTGAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11237#0 TTTTTTTTTTTTTTTTTTTTGATCATTTTAAAAATGTATTACAATCTTTGGATCACTAAT 60 consensus_11237#1 ------------------------------------------------------------ consensus_11237#0 ACTTTTTAACTGTAAGCTTGGCATGCCAAAATTCAAACATAAGATTGTTGTTAAGAGAAA 120 consensus_11237#1 ------------------------------------------------------------ consensus_11237#0 GCTAGTCACACATTTTCCACGTCGCACGAAACAATATGGTACCAAATTATACATGCGATT 180 consensus_11237#1 ------------------------------------------------------------ consensus_11237#0 GGTCACTGAACCAAAGAAATGCAATATCAACAAACAAAGACCATAGGCTACAGCCATCAG 240 consensus_11237#1 ------------------------------------------------------------ consensus_11237#0 CTATAGATAAAGTTAAGCAATAAACCGGGCTTGATCAATACGACAATTAGTAAGTAGGCT 300 consensus_11237#1 ------------------------------------------------------------ consensus_11237#0 GAGCAAATGCAGTAGTCATTCCTCGATGAGCGCCACCACGACCTGGATGGGCACCGAAAT 360 consensus_11237#1 ------------------------------------------------------------ consensus_11237#0 TCCCACCACCGCCCCGCTGACCTGTATTGCGTCTTGGACCACCACTTCCACGGCCTCGAT 420 consensus_11237#1 ------------------------------------------------------------ consensus_11237#0 TTTCATTTGGAATACGGCCACGTAAACCAACTTTGGGATTTCCATGCTGGAAATTTGAAT 480 consensus_11237#1 ------------------------------------------------------------ consensus_11237#0 CAGGTTGTTCGGACTCACGAGAGTTTTCATCCATCGTGCGGTCAGTCTTTTTAGAGTTTA 540 consensus_11237#1 ------------------------------------------------------------ consensus_11237#0 TATTATCTACGACTGCTGGTCGATTAAAACCTGTATGTACTTGTCCGGCTCTTCGAACAG 600 consensus_11237#1 ------------------------------------------------------------ consensus_11237#0 AATCCGCATATGAAATTGGTTTGTGTACATTGATATTTGTCTCATGCTCATCCTGAGATA 660 consensus_11237#1 ------------------------------------------------------------ consensus_11237#0 ATATTGATTTAAAAGATGTAGTTTGATTGACATTGTCCGGTGACAAAGATGATGAACTTC 720 consensus_11237#1 ------------------------------------------------------------ consensus_11237#0 TTCCGAATAATTCAATCTTTGAGTGTTCAACTTCTGGAATATTTAAAACATATTGTTGGT 780 consensus_11237#1 ------------------------------------------------------------ consensus_11237#0 CTATCCTTGTAACCAAAGAACGGTCAATGTTATCTTCAATACTATGATTACTGAAACAAG 840 consensus_11237#1 ------------------------------------------------------------ consensus_11237#0 AAACACTCGTTTTATTAGGTAATTGATTAACAGGCATAACGTCTTCATAGTTTGTTGGAG 900 consensus_11237#1 ------------------------------------------------------------ consensus_11237#0 GTTCGGCCGTGATATGCGAATGGTCGACTCTAGAAGCCTGGATAAAGTTGAACGTACTAT 960 consensus_11237#1 ------------------AATGGTCGACTCTAGAAGCCTGGATAAAGTTGAACGTACTAT 42 ****************************************** consensus_11237#0 TGAGTGGTCGGATGACTTGATCCACCGGTTCATCTGAAGTTGTAACAGAAGAGTGCCCAC 1020 consensus_11237#1 TGAGTGGTCGGATGACTTGATCCACCGGTTCATCTGAAGTTGTAACAGAAGAGTGCCCAC 102 ************************************************************ consensus_11237#0 CAATTGTTGTGAATTCATTATAGGGAACAGTAGGCACATCAGTGGGACCTGATAGGCCGG 1080 consensus_11237#1 CAATTGTTGTGAATTCATTATAGGGAACAGTAGGCACATCAGTGGGACCTGATAGGCCGG 162 ************************************************************ consensus_11237#0 TAGGTGAGTTAGTTTCCGAATCTGCAACAACTTGTGTTGGTTCTGGTACAACCGTTGTGC 1140 consensus_11237#1 TAGGTGAGTTAGTTTCCGAATCTGCAACAACTTGTGTTGGTTCTGGTACAACCGTTGTGC 222 ************************************************************ consensus_11237#0 TGCTATCACTAATAAGACCCATCGATTGCTGGACGAGTGGGTTAGACAGTAGTCGGAAGC 1200 consensus_11237#1 TGCTATCACTAATAAGACCCATCGATTGCTGGACGAGTGGGTTAGACAGTAGTCGGAAGC 282 ************************************************************ consensus_11237#0 ACAAATTGCGAATGTCCTTGTAAGTTGTGTGCTTCTTTCGAAAGTCCTCTAAATCGTTTG 1260 consensus_11237#1 ACAAATTGCGAATGTCCTTGTAAGTTGTGTGCTTCTTTCGAAAGTCCTCTAAATCGTTTG 342 ************************************************************ consensus_11237#0 ACAGTGGGACAGGTACTGAATTCCCATTCATCAAATTGAAGGTGCTTGTAGCAACAGTCT 1320 consensus_11237#1 ACAGTGGGACAGGTACTGAATTCCCATTCATCAAATTGAAGGTGCTTGTAGCAACAGTCT 402 ************************************************************ consensus_11237#0 TAAGATCTTCTCGTGCACGTAAGAAATTGGGAACAGAAGATAGAGCTGAAGAACTAACTC 1380 consensus_11237#1 TAAGATCTTCTCGTGCACGTAAGAAATTGGGAACAGAAGATAGAGCTGAAGAACT--CCT 460 ******************************************************* * consensus_11237#0 CAGGCCAATTATCCACTACGGGCGGTGTTAATATATCTCGTACGGCGTCTAACAACTTAA 1440 consensus_11237#1 CGTGCCGATTCTGGCCTCGAGGCCAATTCCC----------------------------- 491 * *** *** * ** *** * consensus_11237#0 GGTTGTTTTCTGATGAAGATTTTGTGACGGCTGAACGGACTGTCGGAATGTCCAAAGAAG 1500 consensus_11237#1 ------------------------------------------------------------ consensus_11237#0 CAAAAAAACGTTCCAAACACATGTGGATACTTAAATACGAAAGAGTATATTTCTCATGTT 1560 consensus_11237#1 ------------------------------------------------------------ consensus_11237#0 CAGCTTCCAGTTGGGACATTTGCTTACCAACGACTGACTCCATATTCGACAAGAGATCCT 1620 consensus_11237#1 ------------------------------------------------------------ consensus_11237#0 TCGTCTGTGCCACAATCTCTTGTACAAACGAGATGTTCTGAACCACACCATCATAGCTTT 1680 consensus_11237#1 ------------------------------------------------------------ consensus_11237#0 CGACGGCTTTCTTTTGTTCATCTTTCAGGACTTCACCTTTCTGCAGTTTTTCGCGATAAC 1740 consensus_11237#1 ------------------------------------------------------------ consensus_11237#0 CATCTAGCTTACTCTTTCTTTTTCCAAGATTCCTTTGTCTTCGCTCAAGATTCGACAAGA 1800 consensus_11237#1 ------------------------------------------------------------ consensus_11237#0 ACTGTCTAACTAACTCACATGGAGAATCACACTCAAGCATGCCTTTAACGCCGGTCACAA 1860 consensus_11237#1 ------------------------------------------------------------ consensus_11237#0 AACAGTTCAAAAATTCCAATAGTCCGTTCAGCCGTCACAAAATCTTCATCAGAAAACAAC 1920 consensus_11237#1 ------------------------------------------------------------ consensus_11237#0 CTTAAGTTGTTAGACGCCGTACGAGATATATTAACACCGCCCGTAGTGGATAATTGGCCT 1980 consensus_11237#1 ------------------------------------------------------------ consensus_11237#0 GGAGTTAGTTCTTCAGCTCTATCTTCTGTTCCCAATTTCTTACGTGCACGAGAAGATCTT 2040 consensus_11237#1 ------------------------------------------------------------ consensus_11237#0 AAGA 2044 consensus_11237#1 ---- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||