cluster # 11243

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Schistosoma mansoni
cluster # 11243 cluster # 11243 Sequences # 42 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11243#0 length = 1135 sequences # 41

consensus_11243#1 length = 411 sequences # 1

consensusID : consensus_11243#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 41
consensus length = 1135
fasta sequence

                              [AACTAAAACCATATGGTTGGGGCTTTCCCGGTATTTAAATTGGGAGCATTGGCTATAAAACAGATAGGAAAGCCCCTGGCCAACTACCTGAAGCGCAAGGCCAAAACAAATGCATTTTTCAGGAACTATGTGTGCCTACCCCCAGCGCAATTATATCATT-TGTGGGAAACCCGACTAAAATTAAAATTATTGGGGCTGCAAATACCAAAGGAGGTTAACAAGTTGAGTGAAGATGCTGCCGTTGACCTTGGATCAGAAG-GTTGGGGGAAATTATCATTTTTGTGGTTGG-GGCCACTTGCCTTCTGCTTGAATATCGCCGGCAAGTAAGGAAA-GAACATAATAA-GGATGAT-TGCGTACAACAAACACTGGATCAGCTAACTAGTCGCGTTAATGAGCTCATGACCGTA-GTTGAGATTCAGGACGCCAAGGTCAGGGAGCTTGCTAGAGCAATAGCCATTTCTAGTCCTGGACATGACCATTAAGATATGTAAAATAGTTAAATGTATGCCTTAAGTCTTTTTCCCAAATATAAATTCGACATTTATGTTTCTTGCTTTTTGACTTGTTGCGTTGAAATTGGTTCACAGCAAACGGTTTCAAAATTCATATTGGGTGTTGATTTCGGAAGCACTCATGCATGCGCCAGGGTCTATACTATGGATCTTAAGGTCGTTGGATGTAGCAGCACTAAAGTACCTCGGCTTGAAAGGCCTGATGGTGCTTGCGAATTGGATCCAGAGGCTGTATGGGAATCCTTTTGCAAGCTGCTAGATGAAGCATTACAAGATGCTGAAATTAACCCTGATCGGATCAATTGTATAGGTATTTCTGTTCAGCGAAATAGTCTGTTGTTGTGGGATAAGAAGACATCCAATCCTCGAACTCGTGTTATCACGTGGCAAGATACACGTTCTTTGGATCTCGCCAAAAAGTTAAATCACTCTTTTATCTTTCGTAGTATGAAAACTGCTGGCCATATGTTATATTGGATGACACATCAGTCAAGGTTTAAAGCGTTGGCGTCGTACCACTTCAAAACAGCATTAGCATGTATACGTCTCANATATTTATTAAATGAGAAACCAAAGCTTATTGATGAGTGTCGTAAGGGGTTACTTTGCTATGGTTGTTTGGA]

[+] EMBL CD148203             [AACTAAAACCATATGGTTGGGGCTTTCCCGGTATTTAAATTGGGAGCATTGGCTATAAAACAGATAGGAAAGCCCCTGGCCAACTACCTGAAGCGCAAGGCCAAAACAAATGCATTTTTCAGGAACTATGTGTGCCTACCCCCAGCGCAATTATATCATT TGTGGGAAACCCGACTAAAATTAAAATTATTGGGGCTGCAAATACCAAAGGAGGTTAACAAGTTGAGTGAAGATGCTGCCGTTGTCCTTGGATCAGAAGTGTT GGGGAAATTATCATTTTTGTGGTTGG GGCCACTTGCCTTCTGCTTGAATATCGCCGGCAAGTAAGGAAA GAACATAATAA GGATGAT TGCGTACAACAAACACTGGATCAGCTAACTAGTCGCGTTAATGAGCTCATGACCGTA GTTGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD133356             [                                                                     AAGCCCCTGGCCAACTACCTGAAGCGCAAGGCCAAAACAAATGCATTTTTCAGGAACTATGTGTGCCTACCCCCAGCGCAATTATATCATT TGTGGGAAACCCGACTAAAATTAAAATTATTGGGGCTGCAAATACCAAAGGAGGTTAACAAGTTGAGTGAAGATGCTGCCGTTGACCTTGGATCAGAAGTGTTGGGGGAAATTATCATTTTTGTGGTTGG GGCCACTTGCCTTCTGCTTGAATATCGCCGGCAAGTAAGGAAA GAACATAATAA GGATGAT TGCGTACAACAAACACTGGATCAGCTAACTAGCCGCGTTAATGAGCTCATGACCGTA GTTGAGATTCAGGACGCCAAGGTCAGGGAGCTTGCTAGAGCAATAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD127060             [                                                                          CCTGGCCAACTACCTGAAGCGCAAGGCCAAAACAAATGCATTTTTCAGGAACTATGTGTGCCTACCCCCAGCGCAATTATATCATT TGTGGGAAACCCGACTAAAATTAAAATTATTGGGGCTGCAAATACCAAAGGAGGTTAACAAGTTGAGTGAAGATGCTGCCGTTGACCTTGGATCAGAAGTGCTGGGGGAAATTATCATTTTTGTGGTTGG GGCCACTTGCCTTCTGCTTGAATATCGCCGGCAAGTAAGGAAA GAACATAATAA GGATGAT TGCGTACAACAAACACTGGATCAGCTAACTAGTCGCGTTAATGAGCTaca                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD181433             [                                                                                                            AATGCATTTTTCAGGAACTATGTGTGCCTACCCCCAGCGCAATTATATCATT TGTGGGAAACCCGACTAAAATTAAAATTATTGGGGCTGCAAATACCAAAGGAGGTTAACAAGTTGAGTGAAGATGCTGCCGTTGACCTTGGATCAGAAGTGTTGGGGGAAATTATCATTTTTGTGGTTGG GGCCACTTGCCTTCTGCTTGAATATCGCCGGCAAGTAAGGAAA GAACATAATAA GGATGAT TGCGTACAACAAACACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD070758             [                                                                                                                                                           TCATN TGTGGGAAACCCGACTAAAATTAAAATTATTGGGGCTGCAAATACCAAAGGAGGTTAACAAGTTGAGTGAAGATGCTGCCGTTGACCTTGGATCAGAAGTGCTGGGGGAAATTATCATTTTTGTGGTTGG GGCCACTTGCCTTCTGCTTGAATATCGCCGGCAAGTAAGGAAA GAACATAATAA GGATGAT TGCGTACAACAAACACTGGATCAGCTAACTAGTCGCGTTAATGAGCTCATGACCGTA GTTGAGATTCAGGACGCCAAGGTCAGGGAGCTTGCTAGAGCAATAGCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD070914             [                                                                                                                                                           TCATTGTG GGGAAACCCGACTAAAATTAAAATTATTGGGGCTGCAAATACCAAAGGAGGTTAACAAGTTGAGTGAAGATGCTGCCGTTGACCTTGGATCAGAAGTGCTGGGGGAAATTATCATTTTTGTGGTTGG GGCCACTTGCCTTCTGCTTGAATATCGCCGGCAAGTAAGGAAA GAACATAATAA GGATGAT TGCGTACAACAAACACTGGATCAGCTAACTAGTCGCGTTAATGAGCTCATGACCGTA GTTGAGATTCAGGACGCCAAGGTCAGGGAGCTTGCTAGAGCAATAGCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD114740             [                                                                                                                                                                   TGGG AACCCGACTAAAATTAAAATTATAGGGGCTGCAAATACCAAAGGAGGTTAACAAGTTGAGTGAAGATGCTGCCGTTGACCTTGGATCAGAAGTGTTGGGGGAAATTATCATTTTTGTGGTTGG GGCCACTTGCCTTCTGCTTGAATATCGCCGGCAAGTAAGGAAA GAACATAATAA GGATGAT TGCGTACAACAAACACTGGATCAGCTAACTAGTCGCGTTAATGAGCCCATGACCGTA GTTGAGATTCAGGACGCCAAGGTCAGGGAGCTTGCTAGAGCAATAGCCATTTCTAGTCCTGGACATGACCATTAAGATATGTAAAATAGTTAAATGTATGCCTTAAGTCTTTTTCCCAAATATAAATTCGACATTTATGTTTCTTGCTTTTTGACTTGTTGCGTTGAAATTGGTTCACAGCAAACGGTTTCAAAATTCATATTGGGTGTTGATTTCGGAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD112773             [                                                                                                                                                                                                                                                   TGACCTTGGATCAGAGGTGTTGGGGGAAATTATCATTTTTGTGGTTGG GGCCACTTGCCTTCTGCTTGAATATCGCCGGCAAGTAAGGAAA GAACATAATAA GGATGAT TGCGTACAACAAACACTGGATCAGCTAACTAGTCGCGTTAATGAGCTCATGACCGGA GTTGAGATTCAGGACGCCAAGGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD112775             [                                                                                                                                                                                                                                                   TGACCTTGGATCAGAAGTGTTGGGGGAAATTATCATTTTTGCGGTTGG GGCCACTTGCCTTCTGCTTGAATATCGCCGGCAAGTAAGGAAA GAACATAATAA GGATGAT TGCGTACAACAAACACTGGATCAGCTAACTAGTCGCGTTAATGAGCTCATGACCGTA GTTGAGATTCAGGACGCCAAGGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD111074             [                                                                                                                                                                                                                                                  gTGACCTTGGATCAGAAGTGTTGGGGGAAATTATCATTTTTGTGGTTGGTGGCCACTTGCCTTCTGCTTGAATATCGCCGGCAAGTAAGGAAA GAACATAATAA GGATGAT TGCGTACAACAAACACTGGATCAGCTATCTATTCGCGTTAATGAGCTCATGACCGTAGGTTGAGATTCAGGACGCCAAGGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD148086             [                                                                                                                                                                                                                                                                     GTTGGGGGAAATTATCATTTTTGTGGTTGG GGCCACTTGCCTTCTGCTTGAATATCGCCGGCAAGTAAGGAAA GAACATAATAA GGATGAT TGCGTACAACAAACACTGGATCAGCTAACTAGTCGCGTTAATGAGCTCATGACCGTA GTTGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD148148             [                                                                                                                                                                                                                                                                     GTTGGGGGAAATTATCATTTTTGTGGTTGG GGCCACTTGCCTTCTGCTTGAATATCGCCGGCAAGTAAGGAAA GAACATAATAA GGATGAT TGCGTACAACAAACACTGGATCAGCTAACTAGTCGCGTTAATGAGCTCATGACCGTA GTTGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD148060             [                                                                                                                                                                                                                                                                     GTTGGGGGAAATTATCATTTTTGCGGTTGG GGCCACTTGCCTTCTGCTTGAATATCGCCGGCAAGTAAGGAAA GAACATAATAA GGATGAT TGCGTACAACAAACACTGGATCAGCTAACTAGTCGCGTTAATGAGCTCATGACCGTA GTTGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD148108             [                                                                                                                                                                                                                                                                     GTTGGGGGAAATTATCATTTTTGTGGTTGG GGCCACTTGCCTTCTGCTTGAATATCGCCGGCAAGTAAGGAAA GAACATAATAA GGATGAT TGCGTACAACAAACACTGGATCAGCTAACTAGTCGCGTTAATGAGCTCATGACCGTA GTTGAGATTCAGGACGCCAAGGTCAGGGAGCTTGCTAGAGCAATAGCCATTTCTAGTCCTGGACATGACCATTAAGATATGTAAAATAGTTAAATGTATGCCTTAAGTCTTTTTCCCAAATATAAATTCGACATTTATGTTTCTTGCTTTTTGACTTGTTGCGTTGAAATTGGTTCACAGCAAACGGTTTCAAAATTCATATTGGGTGTTGACTTCGGAAGCACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD097463             [                                                                                                                                                                                                                                                                     GTTGGGGGAAATTATCATTTTTGTGGTTGG GGCCACTTGCCTTCTGCTTGAATATCGCCGGCAAGTAAGGAAA GAACATAATAA GGATGAT TGCGTACAACAAACACTGGATCAGCTAACTAGTCGCGTTAATGAGCTCATGACCGTA GTTGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD147950             [                                                                                                                                                                                                                                                                     GTTGGGGGAAATTATCATTTTTGTGGTTGG GGCCACTTGCCTTCTGCTTGAATATCGCCGGCAAGTAAGGAAA GAACATAATAA GGATGAT TGCGTACAACAAACACTGGATCAGCTAACTAGTCGCGTTAATGAGCTCATGACCGTA GTTGAGATTCAGGACGCCAAGGTCAGGGAGCTTGCTAGAGCAATAGCCATTTCTAGTCCTGGACATGACCATTAAGATATGTAAAATAGTTAAATGTATGCCTTAAGTCTTTTTCCCAAATATAAATTCGACATTTATGTTTCTTGCTTTTTGACTTGTTGCGTTGAAATTGGTTCACAGCAAACGGTTTCAAAATTCATATTGGGTGTTGATTTCGGAATCACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD097421             [                                                                                                                                                                                                                                                                     GTTGGGGGAAATTATCATTTTTGTGGTTGG GGCCACTTGCCTTCTGCTTGAATATCGCCGGCAAGTAAGGAAA GAACATAATAA GGATGAT TGCGTACAACAAACACTGGATCAGCTAACTAGTCGCGTTAATGAGCTCATGACCGTA GTTGAGATTCAGGACGCCAAGGTCAGGGAGCTTGCTAGAGCAATAGCCATTTCTAGTCCTGGACATGACCATTAAGATATGTAAAATAGTTAAATGTATGCCTTAAGTCTTTTTCCCAAATATAAATTCGACATTTATGTTTCTTGCTTTTTGACTTGTTGCGTTGAAATTGGTTCACAGCAAACGGTTTCAAAATTCATATTGGGTGTTGATTTCGGAAGCACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD148028             [                                                                                                                                                                                                                                                                     GTTGGGGGAAATTATCATTTTTGTGGTTGG GGCCACTTGCCTTCTGCTTGAATATCGCCGGCAAGTAAGGAAA GAACATAATAA GGATGAT TGCGTACAACAAACACTGGATCAGCTAACTAGTCGCGTTAATGAGCTCATGACCGTA GTTGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD148061             [                                                                                                                                                                                                                                                                     GTTGGGGGAAATTATCATTTTTGTGGTTGG GGCCACTTGCCTTCTGCTTGAATATCGCCGGCAAGTAAGGAAA GAACATAATAA GGATGAT TGCGTACAACAAACACTGGATCAGCTAACTAGTCGCGTTAATGAGCTCATGACCGTA GTTGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD148067             [                                                                                                                                                                                                                                                                     GTTGGGGGAAATTATCATTTTTGTGGTTGG GGCCACTTGCCTTCTGCTTGAATATCGCCGGCAAGTAAGGAAA GAACATAATAA GGATGAT TGCGTACAACAAACACTGGATCAGCTAACTAGTCGCGTTAATGAGCTCATGACCGTA GTTGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD148076             [                                                                                                                                                                                                                                                                     GTTGGGGGAAATTATCATTTTTGTGGTTGG GGCCACTTGCCTTCTGCTTGAATATCGCCGGCAAGTAAGGAAA GAACATAATAA GGATGAT TGCGTACAACAAACACTGGATCAGCTAACTAGTCGCGTTAATGAGCTCATGACCGTA GTTGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD148013             [                                                                                                                                                                                                                                                                      TTGGGGGAAATTATCATTTTTGTGGTTGG GGCCACTTGCCTTCTGCTTGAATATCGCCGGCAAGTAAGGAAA GAACATAATAA GGATGAT TGCGTACAACAAACACTGGATCAGCTAACTAGTCGCGTTAATGAGCTCATGACCGTA GTTGAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD148020             [                                                                                                                                                                                                                                                                      TTGGGGGAAATTATCATTTTTGTGGTTGG GGCCACTTGCCTTCTGCTTGAATATCGCCGGCAAGTAAGGAAA GAACATAATAA GGATGAT TGCGTACAACAAACACTGGATCAGCTAACTAGTCGCGTTAATGAGCTCATGACCGTA GTTGAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD148172             [                                                                                                                                                                                                                                                                      TTGGGGGAAATTATCATTTTTGTGGTTGG GGCCACTTGCCTTCTGCTTGAATATCGCCGGCAAGTAAGGAAA GAACATAATAA GGATGAT TGCGTACAACAAACACTGGATCAGCTAACTAGTCGCGTTAATGAGCTCATGACCGTA GTTGAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD148206             [                                                                                                                                                                                                                                                                      TTGGGGGAAATTATCATTTTTGTGGTTGG GGCCACTTGCCTTCTGCTTGAATATCGCCGGCAAGTAAGGAAA GAACATAATAA GGATGAT TGCGTACAACAAACACTGGATCAGCTAACTAGTCGCGTTAATGAGCTCATGACCGTA GTTGAGATTCAGGACGCCAAGGTCAGGGAGCTTGCTAGAGCAATAGCCATTTCTAGTCCTGGACATGACCATTAAGATATGTAAAATAGTTAAATGTATGCCTTAAGTCTTTTTCCCAAATATAAATTCGACATTTATGTTTCTTGCTTTTTGACTTGTTGCGTTGAAATTGGTTCACAGCAAACGGTTTCAAAATTCATATTGGGTGTTGATTTCGGAAGCACTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD148033             [                                                                                                                                                                                                                                                                      TTGGGGGAAATTATCATTTTTGTGGTTGG GGCCACTTGCCTTCTGCTTGAATATCGCCGGCAAGTAAGGAAA GAACATAATAA GGATGAT TGCGTACAACAAACACTGGATCAGCTAACTAGTCGCGTTAATGAGCTCATGACCGTA GTTGAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD148054             [                                                                                                                                                                                                                                                                      TTGGGGGAAATTATCATTTTTGTGGTTGG GGCCACTTGCCTTCTGCTTGAATATCGCCGGCAAGTAAGGAAA GAACATAATAA GGATGAT TGCGTACAACAAACACTGGATCAGCTAACTAGTCGCGTTAATGAGCTCATGACCGTA GTTGAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD097439             [                                                                                                                                                                                                                                                                      TTGGGGGAAATTATCATTTTTGTGGTTGG GGCCCCTTGCCTTCTGCTTGAATATCGCCGGCAAGTAAGGAAA GAGCATAATAA GGATGAT TGCGTACAACAAACACTGGATCAGCTAACTAGTCGCGTTAATGAGCTCATGACCGTA GTTGAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD148071             [                                                                                                                                                                                                                                                                      TTGGGGGAAATTATCATTTTTGTGGTTGG GGCCACTTGCCTTCTGCTTGAATATCGCCGGCAAGTAAGGAAA GAACATAATAA GGATGAT TGCGTACAACAAACACTGGATCAGCTAACTAGTCGCGTTAATGAGCTCATGACCGTA GTTGAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD148171             [                                                                                                                                                                                                                                                                      TTGGGGGAAATTATCATTTTTGTGGTTGG GGCCACTTGCCTTCTGCTTGAATATCGCCGGCAAGTAAGGAAA GAACATGATAA GGATGAT TGCGTACAACAAACACTGGATCAGCTAACTAGTCGCGTTAATGAGCTCATGACCGTA GTTGAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD148199             [                                                                                                                                                                                                                                                                      TTGGGGGAAATTATCATTTTTGTGGTTGG GGCCACTTGCCTTCTGCTTGAATATCGCCGGCAAGTAAGGGAA GAACATAATAA GGATGAT TGCGTACAACAAACACTGGATCAGCTAACTAGTCGCGTTAATGAGCTCATGACCGTA GTTGAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD097495             [                                                                                                                                                                                                                                                                      TTGGGGGAAATTATCATTTTTGTGGTTGG GGCCACTTGCCTTCTGCTTGAATATCGCCGGCAAGTAAGGAAA GAACATAATAA GGATGAT TGCGTACAACAAACACTGGATCAGCTAACTAGTCGCGTTAATGAGCTCATGACCGTA GTTGAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD148002             [                                                                                                                                                                                                                                                                      TTGGGGGAAATTATCATTTTTGTGGTTGG GGCCACTTGCCTTCTGCTTGAATATCGCCGGCAAGTAAGGAAA GAACATAATAA GGATGAT TGCGTACAACAAACACTGGATCAGCTAACTAGTCGCGTTAATGAGCTCATGACCGTA GTTGAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD148080             [                                                                                                                                                                                                                                                                     gcTGGGGGAAATTATCATTTTTGTGGTTGG GGCCACTTGCCTTCTGCTTGAATATCGCCGGCAAGTAAGGAAA GAACATAATAA GGATGAT TGCGTACAACAAACACTGGATCAGCTAACTAGTCGCGTTAATGAGCTCATGACCGTA GTTGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD148118             [                                                                                                                                                                                                                                                                     gcTGGGGGAAATTATCATTTTTGTGGTTGG GGCCACTTGCCTTCTGCTTGAATATCGCCGGCAAGTAAGGAAA GAACATAATAA GGATGAT TGCGTACAACAAACACTGGATCAGCTAACTAGTCGCGTTAATGAGCTCATGACCGTA GTTGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD148021             [                                                                                                                                                                                                                                                                        GGGGGAAATTATCATTTTTGTGGTTGG GGCCACTTGCCTTCTGCTTGAATATCGCCGGCAAGTAAGGAAA GAACATAATAA GGATGAT TGCGTACAACAAACACTGGATCAGCTAACTAGTCGCGTTAATGAGCTCATGACCGTA GTTGAGATTCAGGACGCCAAGGTCAGGGAGCTTGCTAGAGCAATAGCCATTTCTAGTCCTGGACATGACCATTAAGATATGTAAAATAGTTAAATGTATGCCTTAAGTCTTTTTCCCAAATATAAATTCGACATTTATGTTTCTTGCTTTTTGACTTGTTGCGTTGAAATTGGTTCACAGCAAACGGTTTCAAAATTCATATTGGGTGTTGATTTCGGAAGCACTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD147935             [                                                                                                                                                                                                                                                                                                                                       agnnGAAANGAACATAATAANGGATGATNTGCGTACAACAAACACTGGATCAGCTAACTAGTCGCGTTAATGAGCTCATGACCGTA GTTGAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD150398             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CGGTTTCAAAATTCATATTGGGTGTTGATTTCGGAAGCACTCATGCATGCGCCAGGGTCTATACTATGGATCTTAAGGTCGTTGGATGTAGCAGCACTAAAGTACCTCGGCTTGAAAGGCCTGATGGTGCTTGCGGATTGGATCCAGAGGCTGTATGGGAATCCTTTTGCAAGCTGCTAGATGAAGCATTACAAGATGCTGAAATTAACTCTGATCGGATCAATTGTATAGGTATTTCTGTTCAGCGAAATAGTCTGTTGTTGTGGGATAAGAAGACATCCAATCCTCGAACTCGTGTTATCACGTGGCAAGATACACGTTCTTTGGATCTCGCCAAAAAGTTAAATCACTCTTTTATCTTTCGTAGTATGAAAACTGCTGGCCATATGTTATATTGGATGACACATCAGTCAAGGTTTAAAGCGTTGGCGTCGTACCACTTCAAAACAGCATTAGCATGTATACGTCTCANATATTTATTAAATGAGAAACCAAAGCTTATTGATGAGTGTCGTAAGGGGTTACTTTGCTATGGTTGTTTGG ]
[+] EMBL CD150452             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CGGTTTCAAAATTCATATTGGGTGTTGATTTCGGAAGCACTCATGCATGCGCCAGGGTCTATACTACGGATCTTAAGGTCGTTGGATGTAGCAGCACTAAAGTACCTCGGCTTGAAAGGCCTGATGGTGCTTGCGAATTGGATCCAGAGGCTGTATGGGAATCCTTTTGCAAGCTGCTAGATGAAGCATTACAAGATGCTGAAATTAACCCTGATCGGATCAATTGTATAGGTATTTCTGTTCAGCGAAATAGTCTGTTGTTGTGGGATAAGAAGACATCCAATCCTCGAACTCGTGTTATCACGTGGCAAGATACACGTTCTTTGGATCTCGCCAAAAAGTTAAATCACTCTTTTATCTTTCGTGGTATGAAAACTGCTGGCCATATGTTATATTGGATGACACATCAGTCAAGGTTTAAAGCGTTGGCGTCGTACCACTTCAAAACAGCATTAGCATGTATACGTCTCANATATTTATTAAATGAGAAACCAAAGCTTATTGATGAGTGTCGTAAGGGGTTACTTTGCTATGGTTGNTTGG ]
[+] EMBL CD150384             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CGGTTTCAAAATTCATATTGGGTGTTGATTTCGGAAGCACTCATGCATGCGCCAGGGTCTATACTATGGATCTTAAGGTCGTTGGATGTAGCAGCACTAAAGTACCTCGGCTTGAAAGGCCTGATGGTGCTTGCGAATTGGATCCAGAGGCTGTATGGGAATCCTTTTGCAAGCTGCTAGATGAAGCATTACAAGATGCTGAAATTAACCCTGATCGGATCAATTGTATAGGTATTTCTGTTCAGCGAAATAGTCTGTTGTTGTGGGATAAGAAGACATCCAATCCTCGAACTCGTGTTATCACGTGGCAAGATACACGTTCTTTGGATCTCGCCAAAAAGTTAAATCACTCTTTTATCTTTCGTAGTATGAAAACTGCTGGCCATATGTTATATTGGATGACACATCAGTCAAGGTTTAAAGCGTTGGCGTCGTACCACTTCAAAACAGCATTAGCATGTATACGTCTCANATATTTATTAAATGAGAAACCAAAGCTTATTGATGAGTGTCGTAAGGGGTTACTTTGCTATGGTTGTTTGG ]
[-] EMBL CD200395             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TATAGGTATTTCTGTTCAGCGAAATAGTCTGTTGTTGTGGGATAAGAAGACATCCAATCCTCGAACTCGTGTTATCACGTGGCAAGATACACGTTCTTTGGATCTCGCCAAAAAGTTAAATCACTCTTTTATCTTTCGTAGTATGAAAACTGCTGGCCATATGTTATATTGGATGACACATCAGTCAAGGTTTAAAGCGTTGGCGTCGTTCCACTTCAAAACAGCATTAGCATGTATACGTCTCAAATATTTATTAAATGAGAATCCAAAGCTTATTGATGAGTGTCGTAAGGGGTTACTTTGCTATGGTCGTTAGGA]




>consensus_11243#0
AACTAAAACCATATGGTTGGGGCTTTCCCGGTATTTAAATTGGGAGCATTGGCTATAAAA
CAGATAGGAAAGCCCCTGGCCAACTACCTGAAGCGCAAGGCCAAAACAAATGCATTTTTC
AGGAACTATGTGTGCCTACCCCCAGCGCAATTATATCATTTGTGGGAAACCCGACTAAAA
TTAAAATTATTGGGGCTGCAAATACCAAAGGAGGTTAACAAGTTGAGTGAAGATGCTGCC
GTTGACCTTGGATCAGAAGGTTGGGGGAAATTATCATTTTTGTGGTTGGGGCCACTTGCC
TTCTGCTTGAATATCGCCGGCAAGTAAGGAAAGAACATAATAAGGATGATTGCGTACAAC
AAACACTGGATCAGCTAACTAGTCGCGTTAATGAGCTCATGACCGTAGTTGAGATTCAGG
ACGCCAAGGTCAGGGAGCTTGCTAGAGCAATAGCCATTTCTAGTCCTGGACATGACCATT
AAGATATGTAAAATAGTTAAATGTATGCCTTAAGTCTTTTTCCCAAATATAAATTCGACA
TTTATGTTTCTTGCTTTTTGACTTGTTGCGTTGAAATTGGTTCACAGCAAACGGTTTCAA
AATTCATATTGGGTGTTGATTTCGGAAGCACTCATGCATGCGCCAGGGTCTATACTATGG
ATCTTAAGGTCGTTGGATGTAGCAGCACTAAAGTACCTCGGCTTGAAAGGCCTGATGGTG
CTTGCGAATTGGATCCAGAGGCTGTATGGGAATCCTTTTGCAAGCTGCTAGATGAAGCAT
TACAAGATGCTGAAATTAACCCTGATCGGATCAATTGTATAGGTATTTCTGTTCAGCGAA
ATAGTCTGTTGTTGTGGGATAAGAAGACATCCAATCCTCGAACTCGTGTTATCACGTGGC
AAGATACACGTTCTTTGGATCTCGCCAAAAAGTTAAATCACTCTTTTATCTTTCGTAGTA
TGAAAACTGCTGGCCATATGTTATATTGGATGACACATCAGTCAAGGTTTAAAGCGTTGG
CGTCGTACCACTTCAAAACAGCATTAGCATGTATACGTCTCANATATTTATTAAATGAGA
AACCAAAGCTTATTGATGAGTGTCGTAAGGGGTTACTTTGCTATGGTTGTTTGGA

consensusID : consensus_11243#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 411
fasta sequence

                              [ATTTTTCAGGAACTATGTGTGCCTACCCCCAGCGCAATCAAACGGTTTCAAAATTCATATTGGGTGTTGATTTCGGAAGCACTCATGCATGCGCCAGGGTCTATACTATGGATCTTAAGGTCGTTGGATGTAGCAGCACTAAAGTACCTCGGCTTGAAAGGCCTGATGGTGCTTGCGAATTGGATCCAGAGGCTGTATGGAATCCTTTTGCAAGCTGCTAGATGAAGCATTACAAGATGCTGAAATTAACCCTGATCGGATCAATTGTATAGGTATTTCTGTTCAGCGAAATAGTCTGTTGTTGTGGGATAAGAAGACATCCAATCCTCGAACTCGTGTTATCACGTGGCAAGATACACGTTCTTTGGATCTCGCCAAAAAGTTAAATCACTCTTTTATCTTTCGTAGTAT]

[-] EMBL CD097291             [ATTTTTCAGGAACTATGTGTGCCTACCCCCAGCGCAATCAAACGGTTTCAAAATTCATATTGGGTGTTGATTTCGGAAGCACTCATGCATGCGCCAGGGTCTATACTATGGATCTTAAGGTCGTTGGATGTAGCAGCACTAAAGTACCTCGGCTTGAAAGGCCTGATGGTGCTTGCGAATTGGATCCAGAGGCTGTATGGAATCCTTTTGCAAGCTGCTAGATGAAGCATTACAAGATGCTGAAATTAACCCTGATCGGATCAATTGTATAGGTATTTCTGTTCAGCGAAATAGTCTGTTGTTGTGGGATAAGAAGACATCCAATCCTCGAACTCGTGTTATCACGTGGCAAGATACACGTTCTTTGGATCTCGCCAAAAAGTTAAATCACTCTTTTATCTTTCGTAGTAT]




>consensus_11243#1
ATTTTTCAGGAACTATGTGTGCCTACCCCCAGCGCAATCAAACGGTTTCAAAATTCATAT
TGGGTGTTGATTTCGGAAGCACTCATGCATGCGCCAGGGTCTATACTATGGATCTTAAGG
TCGTTGGATGTAGCAGCACTAAAGTACCTCGGCTTGAAAGGCCTGATGGTGCTTGCGAAT
TGGATCCAGAGGCTGTATGGAATCCTTTTGCAAGCTGCTAGATGAAGCATTACAAGATGC
TGAAATTAACCCTGATCGGATCAATTGTATAGGTATTTCTGTTCAGCGAAATAGTCTGTT
GTTGTGGGATAAGAAGACATCCAATCCTCGAACTCGTGTTATCACGTGGCAAGATACACG
TTCTTTGGATCTCGCCAAAAAGTTAAATCACTCTTTTATCTTTCGTAGTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11243#0      AACTAAAACCATATGGTTGGGGCTTTCCCGGTATTTAAATTGGGAGCATTGGCTATAAAA 60
consensus_11243#1      ------------------------------------------------------------
                                                                                   

consensus_11243#0      CAGATAGGAAAGCCCCTGGCCAACTACCTGAAGCGCAAGGCCAAAACAAATGCATTTTTC 120
consensus_11243#1      ------------------------------------------------------------
                                                                                   

consensus_11243#0      AGGAACTATGTGTGCCTACCCCCAGCGCAATTATATCATTTGTGGGAAACCCGACTAAAA 180
consensus_11243#1      ------------------------------------------------------------
                                                                                   

consensus_11243#0      TTAAAATTATTGGGGCTGCAAATACCAAAGGAGGTTAACAAGTTGAGTGAAGATGCTGCC 240
consensus_11243#1      ------------------------------------------------------------
                                                                                   

consensus_11243#0      GTTGACCTTGGATCAGAAGGTTGGGGGAAATTATCATTTTTGTGGTTGGGGCCACTTGCC 300
consensus_11243#1      ------------------------------------------------------------
                                                                                   

consensus_11243#0      TTCTGCTTGAATATCGCCGGCAAGTAAGGAAAGAACATAATAAGGATGATTGCGTACAAC 360
consensus_11243#1      ------------------------------------------------------------
                                                                                   

consensus_11243#0      AAACACTGGATCAGCTAACTAGTCGCGTTAATGAGCTCATGACCGTAGTTGAGATTCAGG 420
consensus_11243#1      ------------------------------------------------------------
                                                                                   

consensus_11243#0      ACGCCAAGGTCAGGGAGCTTGCTAGAGCAATAGCCATTTCTAGTCCTGGACATGACCATT 480
consensus_11243#1      ------------------------------------------------------------
                                                                                   

consensus_11243#0      AAGATATGTAAAATAGTTAAATGTATGCCTTAAGTCTTTTTCCCAAATATAAATTCGACA 540
consensus_11243#1      ------------------------------------------------------------
                                                                                   

consensus_11243#0      TTTATGTTTCTTGCTTTTTGACTTGTTGCGTTGAAATTGGTTCACAGCAAACGGTTTCAA 600
consensus_11243#1      ---------ATTTTTCAGGAACTATGTGTGCCTACCCCCAGCGCAATCAAACGGTTTCAA 51
                                 **  *     ***   ** *   *           * *************

consensus_11243#0      AATTCATATTGGGTGTTGATTTCGGAAGCACTCATGCATGCGCCAGGGTCTATACTATGG 660
consensus_11243#1      AATTCATATTGGGTGTTGATTTCGGAAGCACTCATGCATGCGCCAGGGTCTATACTATGG 111
                       ************************************************************

consensus_11243#0      ATCTTAAGGTCGTTGGATGTAGCAGCACTAAAGTACCTCGGCTTGAAAGGCCTGATGGTG 720
consensus_11243#1      ATCTTAAGGTCGTTGGATGTAGCAGCACTAAAGTACCTCGGCTTGAAAGGCCTGATGGTG 171
                       ************************************************************

consensus_11243#0      CTTGCGAATTGGATCCAGAGGCTGTATGGGAATCCTTTTGCAAGCTGCTAGATGAAGCAT 780
consensus_11243#1      CTTGCGAATTGGATCCAGAGGCTGTATGG-AATCCTTTTGCAAGCTGCTAGATGAAGCAT 230
                       ***************************** ******************************

consensus_11243#0      TACAAGATGCTGAAATTAACCCTGATCGGATCAATTGTATAGGTATTTCTGTTCAGCGAA 840
consensus_11243#1      TACAAGATGCTGAAATTAACCCTGATCGGATCAATTGTATAGGTATTTCTGTTCAGCGAA 290
                       ************************************************************

consensus_11243#0      ATAGTCTGTTGTTGTGGGATAAGAAGACATCCAATCCTCGAACTCGTGTTATCACGTGGC 900
consensus_11243#1      ATAGTCTGTTGTTGTGGGATAAGAAGACATCCAATCCTCGAACTCGTGTTATCACGTGGC 350
                       ************************************************************

consensus_11243#0      AAGATACACGTTCTTTGGATCTCGCCAAAAAGTTAAATCACTCTTTTATCTTTCGTAGTA 960
consensus_11243#1      AAGATACACGTTCTTTGGATCTCGCCAAAAAGTTAAATCACTCTTTTATCTTTCGTAGTA 410
                       ************************************************************

consensus_11243#0      TGAAAACTGCTGGCCATATGTTATATTGGATGACACATCAGTCAAGGTTTAAAGCGTTGG 1020
consensus_11243#1      T----------------------------------------------------------- 411
                       *                                                           

consensus_11243#0      CGTCGTACCACTTCAAAACAGCATTAGCATGTATACGTCTCANATATTTATTAAATGAGA 1080
consensus_11243#1      ------------------------------------------------------------
                                                                                   

consensus_11243#0      AACCAAAGCTTATTGATGAGTGTCGTAAGGGGTTACTTTGCTATGGTTGTTTGGA 1135
consensus_11243#1      -------------------------------------------------------