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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11260#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 944 fasta sequence
[TAATAGG-TTTATCAAAAGCAATGGTTAGATACTAATCTAGATGGAAATAATATAATAGCTGATCAACTAACAGGAAATAACTGAAGCTAACAGAACTGAAATGATGTGAATCATTGCTATTCTATTTCCCTCGATCAATACACAATGAGTGAGCCGAGATCGCCTAAAACATATTATTATGACTCCCTTCCACCAGTGATAAAGTCAAAATTAGTGAGAAGTCAGAACAGTTAGAATACATCAAACAGCTAACTGTTTTTCATCACTGTTCACATTCCTCACATTTCTCAATGGTCACCTAGCTAAAATGGGAAACACAGATGATATCTGACTTACGGCAACCAGCCTCATCTGAAGCGTCTCGACAATCTTGCCGACCATCACACCTCATTTGTTGTTCAATGCATTCACCAGAAGAACACTGATATTGACCAGGACGACAACGAGGAGCTGTTGCAAAATAATTTCATTGACAAATAAATATACTTCAGTTAATTTCGA-CCATGAACATTTCATCATCAAAATCATTCAACACGGCCACA-TGCAAAACAACCACTGAGGCACAAATCTTCTCTCAGTACTAGACGGGTGGGTGAATACTACAAAGTTCCTATAGAATAGTTTATTATTTCAAACAGTGGTTACACACATGAGCTCAGACCTTAAGTCGATCGACTACTACACATTCACCAACACAACCATTGCATTTTAACAGTTATCACTAACTGCTGGACTTTCTCGCACATATTCTACCATGTGATTTAGTTCGGAACACCACAATATCACACTTTTCTGGAAAGCAATGGCAATCTAAAGGTGGAATTTCTCTAGAAAACACAGTCGTCGTTATCGTCACCATTCTGTATGTCTCTGTCTCTATCATCATCAGGACTGTCGTCCTGACCATCACTGTCCGTTCTTATTCTACTTACTCTTCTATGTTG]
[+] EMBL CD089035 [TAATAGG TTTATCAAAAGCAATGGTTAGATACTAATCTAGATGGAAATAATATAATAGCTGATCAACTAACAGGAAATAACTGAAGCTAACAGAACTGAAATGATGTGAATCATTGCTATTCTATTTCCCTCGATCAATACACAATGAGTGAGCCGAGATCGCCTAAAACATATTATTATGACTCCCTTCCACCAGTGATAAAGTCAAAATTAGTGAGAAGTCAGAACAGTTAGAATACATCAAACAGCTAACTGTTTTTCATCACTGTTCACATTCCTCACATTTCTCAATGGTCACCTAGCTAAAATGGGAAACACAGATGATATCTGACTTACGGCAACCAGTCTCATCTGAAGCGTCTCGACAATCTTGCCGACCATCACACCTCATTTGTTGTTCAATGCATTCACCAGAAGAACACTGATATTGACCAGGACGACAACGAGGAGCTGTTGCAAAATAATCTCATTGACAAATAAATATACTTCAGTTAATTTCGA CCATGAACATTTCATCATCAAAATCATTCAACACGGCCACA TGCAAAACAACCACTGAGGatgtcc ]
[+] EMBL CD089090 [TAATAGG TTTATCAAAAGCAATGGTTAGATACTAATCTAGATGGAAATAATATAATAGCTGATCAACTAACAGGAAATAACTGAAGCTAACAGAACTGAAATGATGTGAATCATTGCTATTCTATTTCCCTCGATCAATACACAATGAGTGAGCCGAGATCGCCTAAAACATATTATTATGACTCCCTTCCACCAGTGATAAAGTCAAAATTAGTGAGAAGTCAGAACAGTCAGAATACATCAAACAGCTAACTGTTTTTCGTCACTGTTCACATTCCTCACATTTCTCAATGGTCACCTAGCTAAAATGGGAAACACAGATGATATCTGACTTACGGCAACCAGCCTCATCTGAAGCGTCTCGACAATCTTGCCGACCATCACACCTCATTTGTTGTTCAATGCATTCACCAGAAGAACACTGATATTGACCAGGACGACAACGAGGAGCTGTTGCAAAATAATTTCATTGACAAATAAATATACTTCAGTTAATTTCGA CCATGAACATTTCATCATCANAATCATTCAACACGGCCACA TGCAAAACAA ]
[+] EMBL CD089135 [TAATAGG TTTATCAAAAGCAATGGTTAGATACTAATCTAGATGGAAATAATATAATAGCTGATCAACTAACAGGAAATAACTGAAGCTAACAGAACTGAAATGATGTGAATCATTGCTATTCTATTTCCCTCGATCAATACACAATGAGTGAGCCGAGATCGCCTAAAACATATTATTATGACTCCCTTCCACCAGTGATAAAGTCAAAATTAGTGAGAAGTCAGAACAGTTAGAATACATCAAACAGCTAACTGTTTTTCATCACTGTTCACATTCCTCACATTTCTCAATGGTCACCTAGCTAAAATGGGAAACACAGATGATATCTGACTTACGGCAACCAGCCTCATCTGAAGCGTCTCGACAATCTTGCCGACCATCACACCTCATTTGTTGTTCAATGCATTCACCAGAAGAACACTGATATTGACCAGTACGACAACGAGGAGCTGTTGCCAAATAATTTCATTGACAAATAAATATACTTCAGTTAATTTCGA CCATGAACATTTCATCATCCAAATCATTCACCATGTCCACATTGCAAAca ]
[+] EMBL CD089138 [TAATAGGCTTTATCAAAAGCAATGGTTAGATACTAATCTAGATGGAAATAATATAATAGCTGATCAACTAACAGGAAATAACTGAAGCTAACAGAACTGAAATGATGTGAATCATTGCTATTCTATTTCCCTCGATCAATACACAATGAGTGAGCCGAGATCGCCTAAAACATATTATTATGACTCCCTTCCACCAGTGATAAAGTCAAAATTAGTGAGAAGTCAGAACAGTTAGAATACATCAAACAGCTAACTGTTTTTCATCACTGTTCACATTCCTCACATTTCTCAATGGTCACCTAGCTAAAATGGGAAACACAGATGATATCTGACTTACGGCAACCAGCCTCATCTGAAGCGTCTCGACAATCTTGCCGACCATCACACCTCATTTGTTGTTCAATGCATTCACCAGAAGAACACTGATATTGACCAGGACGACAACGAGGAGCTGTTGC AAATAATTTCATTGACAAATAAATATACTTCAGCTAATTTCCACCCATG ACATTTCATCATCAAAATCATTCACCACGCCCACA TGCAAAACc ]
[+] EMBL CD089116 [TAATAGG TTTATCAAAAGCAATGGTTAGATACTAATCTACATGGAAATAATATAATAGCTGATCAACTAACAGGAAATACCTGAAGCTAACAGAACTGAAATGATGTGAATCATTGCTACTCTATTTCCCTCGATCAATACACAATGAGTGAGCCGAGATCGCCTAAAACATATTATTATGACTCCCTTCCACCACTGATAAAGTCAc ]
[-] EMBL CD089027 [ AATAGG TTTATCAAAAGCAATGGTTAGATACTAATCTAGATGGAAATAATATAATAGCTGATCAACTAACAGGAAATAACTGAAGCTAACAGAACTGAAATGATGTGAATCATTGCTATTCTATTTCCCTCGATCAATACACAATGAGTGAGCCGAGATCGCCTAAAACATATTATTATGACTCCCTTCCACCAGTGATAAAGTCAAAATTAGTGAGAAGTCAGAACAGTTAGAATACATCAAACAGCTAACTGTTTTTCATCACTGTTCACATTCCTCACATTTCTCAATGGTCACCTAGCTAAAATGGGAAACACAGATGATATCTGACTTACGGCAACCAGCCTCATCTGAAGCGTCTCGACAATCTTGCCGACCATCACACCTCATTTGTTGTTCAATGCATTCACCAGAAGAACACTGATATTGACCAGGACGACAACGAGGAGCTGTTGCAAAATAATTTCATTGACAAATAAATATACTTCAGTTAATTTCGA CCATGAACATTTCATCATCAAAATCATTCAACACGGCCACA TGCAAAACAA ]
[+] EMBL CD091052 [ A CCATGAACATTTCATCATCAAAATCATTCAACACGGCCACA TGCAAAACAACCACTGAGGCACAAATCTTCTCTCAGTACTAGACGGGTGGGTGAATACTACAAAGTTCCTATAGAATAGTTTATTATTTCAAACAGTGGTTACACACATGAGCTCAGACCTTAAGTCGATCGACTACTACACATTCACCAACACAACCATTGCATTTTAACAGTTATCACTAACTGCTGGACTTTCTCGCACATATTCTACCATGTGATTTAGTTCGGAACACCACAATATCACACTTTTCTGGAAAGCAATGGCAATCTAAAGGTGGAATTTCTCTAGAAAACACAGTCGTCGTTATCGTCACCATTCTGTATGTCTCTGTCTCTATCATCATCAGGACTGTCGTCCTGACCATCACTGTCCGTTCTTATTCTACTTACTCTTCTATGTTG]
[-] EMBL CD090978 [ ATCAAAATCATTCAACACGGCCACA TGCAAAACAAGCACTGAGGCACAAATCTTCTCTCAGTACTAGACGGGTGGGTGAATACTACAAAGTTCCTATAGAATAGTTTATTATTTCAAACAGTGGTTACACACATGAGCTCAGACCTTAAGTCGATCGACTACTACACATTCACCAACACAACCATTGCATTTTAACAGTTATCACTAACTGCTGGACTTTCTCGCACATATTCTACCATGTGATTTAGTTCGGAACACCACAATATCACACTTTTCTGGAAAGCAATGGCAATCTAAAGGTGGAATTTCTCTAGAAAACACAATCGTCGTTATCGTCACCATTCTGTATGTCTCTGTCTCTATCATCATCAGGACTGTCGTCCTGACCATCACTGTCTGTTCTTATTCTACTTACT ]
consensusID : consensus_11260#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 32 consensus length = 517 fasta sequence
[GACAATCTGNCCGACCATCACACNTCATNTGTTGTTCAATGCATTCACCAGAAGAACACTGATATTGACCAGGACGACAACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACA-ATCT-T-G-CCGACCATCAC-AC-CTCATT-TGTTGTTCAA-TGCATTCACCAG-AAGAACACTGATATTGACCAGGACGACAACG-AGGAGGGCAACCAGTCTCAT-CTGAAGCGTCTCG-AC-AATCTTGCCGA-CCATCACACCTC-AT-TTGTTGTTCA-A-TGCATTC-A-CC-A-GAAGAACAC-TGATATTGA-CCAGGACGACAA-CG-AGGAGGGCAA-CCAGTCTCATCTGAAGCGTCTCGACAATCTTGCCGACCATCACACCT-CATTTGTTGTTCAATGCATTCACCAGAAGAACACTGATATTGACCAGGACGACAACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACAATCTTGCCGACCATCACACCTCATTTGTTGTTCAATGCATTCACCAGAAGAACACTG]
[-] EMBL CD201778 [GACAATCTGNCCGACCATCACACNTCATNTGTTGTTCAATGCATTCACCAGAAGAACACTGATATTGACCAGGACGACAACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACA ATCT T G CCGACCATCAC AC CTCATT TGTTGTTCAA TGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAACCAGTCTCAT CTGAAGCGTCTCG AC AATCTTGCCGA CCATCACACCTC AT TTGTTGTTCA A TGCATTC A CC A GAAGAACAC TGATATTGA CCAGGACGACAA CG AGGAGAGCAA CCAGTCTCATCTGAAGCGTCTCGACAATCTTGCCGACCATCACACCT CATTTGTTGTTCAATGCATTCACCAGAAGAACACTGATATTGACCAGGACGACAACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACAATCTTGCCGACCATCACACCTCATTTGTTGTTCAATGCATTCACCAGAAGAACACTG]
[+] EMBL CD166529 [ GTTG TCAATGCATTCACCAGAAGAACACTGATATTGACCAGGACGACAACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACA ATCT T G CCGACCATCAC AC CTCATT TGTGGTTCAA TGCAGTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAA ]
[+] EMBL CD166675 [ gacGCA TCACCAGAAGAACACTGATA TGACCAGGACGAC ACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACA ATCT T G CCGACCATCAC AC CTCATT TGTTGTGCAAGTGCATCCACCAGTAAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAACCAGTCTCAT CTGAAGCGTCTCG ACGAATCTTGCCGA CCATCACACCTC AT TTG ]
[-] EMBL CD166836 [ TTCACCAGAAGAACACTGATATTGACCAGGACGACAACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACC ATCT T C CCGACCATCAC AC CTCATT TGTTGTTCAA TGCTTTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAACCAGTCTCATACTGAAGCGTCTCG AC AATCTTGCCGA CCATCACACCTC AT TTGTTGTTCA A TGCATTC A CC A GAAGAACAC TGATAGTGA CCAGGACGACAA CG AGGAGGGCAAGCCAGTCTCATCTGATGCGT ]
[+] EMBL CD064312 [ CCAGAAGAACACTGATATTGACCAGGACGACAACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACA ATCT T GTCCGACCATCAC AC CTCATTCTGTTGTACAA TGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAACCAGTCTC ]
[-] EMBL CD166531 [ CAGAAGAACACTGATATTGACCAGGACGACAACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACA ATCT T G CCGACCATCAC AC CTCATT TGTTGTTCAA TGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGA GGCAACCAG ]
[+] EMBL CD166554 [ AACACTGATA TGACCAGGACGACAACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACA ATCT T G CCGACCATCAC AC CTCATT TGTTGTTCAA TGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAACCAGTCTCAT CTGAAGCGTCTCGTAC AATCTTGCCG ]
[+] EMBL CD064037 [ AACACTGATA TGACCAGGACGACAACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACA ATCT T G CCGACCATCAC AC CTCATT TGTTGTTCAA TGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAAC ]
[-] EMBL CD064066 [ AACACTGATATTGACCAGGACGACAACGAGGAGGGCAACCAGTCTCGTCTGAAGCGTCTCGACA ATCT T G CCGACCATCAC AC CTCATT TGTTGTTCAA TGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAAC ]
[+] EMBL CD064052 [ AACACTGATA TGA CAGGACGACAACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACA ATCT T G CCGAACATCACTAC CTCATT TGTTGTTCAA TGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAACCAGTCTCAT CTGAAGCGTCTCG AC GATCTTGCCGA ACATCATACCTCTAT TTGTGGTTCA A TGCATTC A CC A GAAGAACACGTGATATTGA CCAGGACGACAA CG AGGAGGGCAAGCCAGTCTCATCTGAAGCGTCTCGACAAACTTGGCGAACATCATACATGCATTTGTGGTTCAATGCATTCACGAGAAGAACACTGATATTGACCAGGACGACCACGAGGA GGCAAg ]
[+] EMBL CD064287 [ ACACTGATATTGACCAGGACGACAACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACA ATCT T G CCGACCATCAC AC CTCATT TGTTGTTCAA TGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAACCAGTCTCAT CTGAAGCGTCTCG AG AATCTTGCCGA ACATCACACCTC AT TTGTTGTGCA A GGCATTC AGCC A GAAGAACAC TGATATTGAGCCAGGACGACCA CT AGGAGGGCAA C ]
[+] EMBL CD063997 [ CACTGATATTGACCAGGACGACAACGAGGAGGGC ACCAGTCTCATCTGAAGCGTCTCGACA ATCT T G CCGACCATCAC AC CTCATT TGTTGTTCAA TGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAATCAGTCTCAT CTGAAGCGTCTCG AC AATCTTGCCGA CCATCACACCTC AT TTGTAGTTCATAGTGCATTC A CC A GAAGAAC ]
[+] EMBL CD166526 [ CACTGATATTGACCAGGACGACAACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACG ATCT T G CCGACCATCAC ACGCTCATT TGTTGTTCAAGTGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAACCAGTCTCAT CTGAATCGTTTCG AC AATCTTGTAGAGCTATAACAGCTC AT TTGTAGTCCA G TGCATTCGA CCGA GAAGAACAC TGATATTGA CCAGGACGACCC TG AGGAGGGCAA CCAGTCTCATCTGAAGCGTCTCGACAATCTTGCCGAGCATCACAGCT CATTTGTTGTTCAATGCATTCACCAGAAGAACACTGATATTGA ]
[+] EMBL CD064032 [ CACTGATATTGACCAGGACGAC ACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACA ATCT T G CCGAGCATCAC AC CTCATT TG TGTTCAA TGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAACCAGTCTCAT CTGAAGCGTCTCG AC AATCTTGCCGA CCATCACACC ]
[+] EMBL CD166780 [ CACTGATATTGACCAGGACGACAACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACA ATCT T G CCGACCATCAC AC CTCATT TGTTGTTCAA TGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAACCAGTCTCAT CTGAAGCGTCTCG AC CATCTTGCCGA ]
[-] EMBL CD063999 [ ACTGATATTGACCAGGACGACAACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACA ATCT T G CCGACCATCAC AC CTCATT TGTTGTTCAA TGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAACCAGTCTCAT CTGAAGCGTCTCG AC AATCTTGCCGA CCATCACACCTC ATATTGTTGTTCA A TGCATTC A CC A GAAGAACAC TGATATTGA CCAGGACGACAANCG AGGAGGGCAA CC ]
[-] EMBL CD166686 [ ACTGATATTGACCAGTACGACCACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACA ATCT T G CCGACCATCAC AC CTCATT TGTTGTCCAA TGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAACCAGTCTCAT CTGAAGCGTCTCG AC AATCTTGCCGA CCATCACACCTC AT TTGTTGTTCA A TGCA TC A CC A GAAGAACAC TGATA TGA CCAGGACGACAA CG A ]
[-] EMBL CD166690 [ ACTGATATTGACCAGGACGACAACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACA ATCT T G CCGACCATCAC AC CTCATT TGTTGTTCAA TGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAACCAGTCTCAT CTGAAGCGTCTCG AC AATCTTGCCGA CCATCACACCTC AT TTGTTGTTCA A TGCATTC A CC A GAAGAACAC TGATA TGA C GGACGACAA CG AGGAGGGCAA CCA TCTCATCTGATGCGTC ]
[-] EMBL CD126754 [ CTGATATTGACCAGGACGACAACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACA ATCT T G CCGACCATCAC AC CTCATT TGTTGTTCAA TGCATTCACCAG AAGAACACTGATATTGACCA GACGACAACG AGGAGGGCAACCAGTCTC ]
[-] EMBL CD166638 [ GATATTGACCAGGACGACAACGACGAGGGCAACCAGTCTCATATGAAGCGTCTCGACA ATGT T C CCGACCATCAC AC CTCATT TGTTGTTCAA TGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAACCAGTCTCAT CTGAAGCGTCTCG AC AATCTTGCCGA CCATCACACCTC AT TTGTTGTTCA A TGCATTC A CC A GAAGAACAC TGATA TGA CCtg ]
[-] EMBL CD166741 [ ATTGACCAGGACGACAACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACA ATCT T G CCGACCATCAC AC CTCATT TGTTGTTC ]
[+] EMBL CD064286 [ ATTGACCAGGACGACAACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACA ATCTCT GTCCGAACATCAC AC CTCA T TGTTGTTCAA TGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACGTAGGAGGGCAACCAGTCTCAT CTGAAGCGTCTCG AC AATCTTGCCGA ACATCACACCTC AT TTGTTGTTCATA TGCATTC A CC AGGAAGAACAC TGATATTGA CCAGGACGACAA CGTAGGAGGGCAA C ]
[+] EMBL CD064039 [ CGACAACGAGGAGGGC ACCAGTCTCATCTGAAGCGT TCGACA ATCT T G CCGACCATCAC AC CTCATT TGTTGTTCAA TGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAAC ]
[-] EMBL CD166577 [ GACAACGAGGAGGGCTACCAGTCTCATCTGAAGCGTCTCGACA ATCT T G CCGACCATCAC AC CTCATT TGTTGTTCAA TGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAACCAGTCTCAT CTGAAGCGTCTCG AC AATCCTGCCGG CCATCACc ]
[-] EMBL CD166564 [ CACCGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACA ATCT T G CCGACCATCAC AC CTCATT TGTTGTTCAA TGCATTCACCAG AAGAACACTGATATTGACCAGGACGACACCG AGGAGGGCAACCAGTCTCAT CTGAAGCGTCTCG AC AATCTTGCCGA CCATCACACCTC AT TTGTTGTTCA A TGCATTC A CC A GAAGAACAC TGATATTGA CCAGGACGACCA CG AGGAGGGCAA CCAGTCTCATCTGAAGCGTCTCGACAATCTTGCCGACCATCACACCT CATTTGTTGTTCAATGCATTCACCAGAAGAACACTGATATTGACCAGGACGACAACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACAATCTTGCCGACCATCACACCTCATTTGTTGTTCAATGCAggtaccg ]
[+] EMBL CD063973 [ GAGGAGGGCA CAGTCTCATCTGAAGCGTCTCGACA ATC T G CCGACCATCAC AC CTCATT TGTTGTTCAA TGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAACCAGTCTCAT CTGAATCGTTTCG AC AATCTTGCCGA CCATCAAACCTC AT TTGT ]
[+] EMBL CD180278 [ AGGGCAACCAGTCTCATCTGAAGCGTCTCGACAGATCT T G CCGACCATCAC AC CTCATT TGTTGTTCAA TGCATTCACCAG AAGAACACTGATATTGTCCAGGACGATAACG AGGAGGGCGACCAGTCTCAT C ]
[+] EMBL CD166848 [ gaAAGCGTCTCGACA ATCT T G CCGACCATCAC AC CTCATT TGTTGTTCAA CGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAAC ]
[+] EMBL CD166695 [ CT TCG ACGACATTCAC AC CTCATT TGTTG TCAA TGCATTCACCAG AGGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAACCAGTCTCAT CTGAAGCGTCTCG AC AATCTTGCCGA ACATCACACCTC AT TTGTTGTTCA A TGCATTC A CC A GAAGAACAC TGATATTGA CCAGGACGACAA CG AGGAGGGCAA C ]
[-] EMBL CD064251 [ T T G CCGACCATCAC AC CTCATT TGTTCTTCAA TGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAACCAGTCTCAT CTGAAGCGTCTCG AC AATCTTGCCGA CCATCACACCTC AT TTCTTGTTCA A TGCATTC A CC A GAAGAACAC TGATATTGA CCAGGACGACAA CG AGGAGGGCAA CCAGTCTCATCTGAAGCGTCTCGACAATCTTGCCGACCATCACACCT CATTTGTTGTTCAATGCATTCACCAGAAGAACACTGATA TGACCAGGACGACAACGAGGAGGGCAACC GTCTCATC ]
[-] EMBL CD064291 [ G CCGACCATCAC AC CTCATT TGTTGTTCAA CGCATTCACCAG AAGAACACTGATATGGACCAGGACGACAACG AGGAGGGCAACCAGTCTCAT CTGAAGCGTCTCG AC AATCTTGCCGA CCATCACACCTC AT TTGTTGTTCA A TGCATTC A CC A GAAGAACAC TGATAGTGA CCAGGACGACAA CG AGGAGGGTAA CCAGTCTCATCTGAAGCGTCTCGACAATCTTGCCGACCATCACACCT CAT ]
[-] EMBL CD166634 [ caTCATT TGTTGTTCAA CGCATTCACCAG AAGAACACTGATAGTGACCAGGACGACAACG AGGAGGGCAACCAGTCTCAT CTGAAGCGTCTAG AC AATCTTGCCGA CCATCACACATC AT TTGTTGTTCA A TGCATTC A CC A GAAGAACAC TGATATTGA CCAGGACGACAA CG AGGAGGGCAA CCAGTCTCATCTAAAGCGTCTAGACAATCTTGCCGACCATCACACCT CATTTGTTGTTCAATGCATTCACCAGAAGAACACTGATA TGACCAGGACGAC ACGAGGAGGGCAACCAGT ]
consensusID : consensus_11260#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 386 fasta sequence
[TGGTCATATCAGTGTTCTTCTGGTGAATGCATTGAACAACAATGAGGTGTGATGGTCGGCAAGATTGTCGAGACGCTTCAGTATGAGACTGGTTGCCCTCCTCGTTGTCGTCCTGGTCAATATCAGTGTTCTTCTGGTGAATGCATTGAACAACAAATGAGGTGTGATTGTCTGCGAGATTGTCGAGACGCTTCATATAATACTGCTTGCCCTCTTCGTTGTCGTCCTGGTCCGTCTCAGTGCTTCTTCTGGGTGCATTGCATTGACCTGCGAATGAGGTGTGATTGTCTGCGTGATTGTCGGGACGCTCCCTATGATCCTGCTTGACCTCTTCGTTGTTGTCCTGGTCCGTCTCAGTGTTCTTCTGTGTGCTGTGATTGACCTGG]
[+] EMBL CD064200 [TGGTCATATCAGTGTTCTTCTGGTGAATGCATTGAACAACAATGAGGTGTGATGGTCGGCAAGATTGTCGAGACGCTTCAGTATGAGACTGGTTGCCCTCCTCGTTGTCGTCCTGGTCAATATCAGTGTTCTTCTGGTGAATGCATTGAACAACAAATGAGGTGTGATTGTCTGCGAGATTGTCGAGACGCTTCATATAATACTGCTTGCCCTCTTCGTTGTCGTCCTGGTCCGTCTCAGTGCTTCTTCTGGGTGCATTGCATTGACCTGCGAATGAGGTGTGATTGTCTGCGTGATTGTCGGGACGCTCCCTATGATCCTGCTTGACCTCTTCGTTGTTGTCCTGGTCCGTCTCAGTGTTCTTCTGTGTGCTGTGATTGACCTGG]
consensusID : consensus_11260#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 343 fasta sequence
[CACCACGTTGTTACATGTACACAGCTATAGCTGAAATCTTACTAAAAAAAGCTGCCTACAAGTCACAATTAGAATCATTTCTTGTCGGTCATGTCCTTCCGACTTGGCATGCTCCTGAAGGATATCGTCGTGCTAGGGCTTACAGATTGCTGGAAAAATTACCAGAAGCTAAATTCAACGACCAGAATAACAAAGAATGCGAGGTGGTTGGCAAACACATTTAATTTCATCAGATCCATCGGGACATTGAGTTTGTCCATCACATCTCTGAGATTGTTGTATACAACTTCCGTCATAACACATAAAGTATCCTAAACCACATCGATCTGGAACTACATTGATT]
[+] EMBL CD061364 [CACCACGTTGTTACATGTACACAGCTATAGCTGAAATCTTACTAAAAAAAGCTGCCTACAAGTCACAATTAGAATCATTTCTTGTCGGTCATGTCCTTCCGACTTGGCATGCTCCTGAAGGATATCGTCGTGCTAGGGCTTACAGATTGCTGGAAAAATTACCAGAAGCTAAATTCAACGACCAGAATAACAAAGAATGCGAGGTGGTTGGCAAACACATTTAATTTCATCAGATCCATCGGGACATTGAGTTTGTCCATCACATCTCTGAGATTGTTGTATACAACTTCCGTCATAACACATAAAGTATCCTAAACCACATCGATCTGGAACTACATTGATT]
consensusID : consensus_11260#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 291 fasta sequence
[ACGCATCACAGAAGAACACTGATATTGACCAGGA-GACAACGAGGAGGGCAAGCGATTTCATCTGAGCCGTCTCGACAATGTTGTATACCGTCACATCGCATTTCAGGAGTAATACACTCACCAGAAGAACAAAGAATGCGAGGTGGTTGGCAAACACATTTAATTTCATCAGATCCATCGGGACATTGAGTTTGTCCATCACATCTCTGAGATTGTTGTATACAACTTCCGTCATAACACATAAAGTATCCTAAACCACATCGATCTGGAACTACATTGATTATTGAAGCT]
[+] EMBL CD166597 [ACGCATCACAGAAGAACACTGATATTGACCAGGA GACAACGAGGAGGGCAAGCGATTTCATCTGAGCCGTCTCGACAATGTTGTATACCGTCACATCGCATTTCAGGAGTAATACA ]
[-] EMBL CD119638 [ GAGCAGTGATATTGACCAGGACGACAACGAGGAGGGCAAGCGATTTCATATGAGTCGTCTCGACAATGTTGTATACCGTCACATCGCATTTCAGGAGTAATACACTCACCAGAAGAACAAAGAATGCGAGGTGGTTGGCAAACACATTTAATTTCATCAGATCCATCGGGACATTGAGTTTGTCCATCACATCTCTGAGATTGTTGTATACAACTTCCGTCATAACACATAAAGTATCCTAAACCACATCGATCTGGAACTACATTGATTATTGAAGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11260#3 ------------------------------------------------------------
consensus_11260#4 ------------------------------------------------------------
consensus_11260#1 ------------------GACAATCTGNCCGACCATCACACNTCATNTGTTGTTCAATGC 42
consensus_11260#0 TAATAGGTTTATCAAAAGCAATGGTTAGATACTAATCTAGATGGAAATAATATAATAGCT 60
consensus_11260#2 ------------------------------------------------------------
consensus_11260#3 -----------------------------------------------------CACCACG 7
consensus_11260#4 ------------------------------------------------------------
consensus_11260#1 ATTCACCAGAAGAACACTGATATTGACCAGGACGACAACGAGGAGGGCAACCAGTCTCAT 102
consensus_11260#0 GATCAACTAACAGGAAATAACTGAAGCTAACAGAACTGAAATGATGTGAATCATTGCTAT 120
consensus_11260#2 ------------------------------------------------------------
consensus_11260#3 TTGTTACATGTACACAGCTATAGCTGAAATCTTACTAAAAAAAGCTGCCTACAAGT-CAC 66
consensus_11260#4 --------------------------------------------------ACGCAT-CAC 9
consensus_11260#1 CTGAAGCGTCTCGACAATCTTGCCGACCATCACACCTCATTTGTTGTTCAATGCATTCAC 162
consensus_11260#0 TCTATTTCCCTCGATCA--ATACACAATGAGTGAGCCGAGATCGCCTAAAACATAT-TAT 177
consensus_11260#2 ----------------------------TGGTCATATCAGTGTTCTTCTGGTGAATGCAT 32
* *
consensus_11260#3 AATTAGAATCATTTCTTGTCGGTCAT-GTC---CTTCCGACTTGG-CATGCT-CCTGAAG 120
consensus_11260#4 AG--AAGAACACTGAT-ATTGACCAG-GAG---ACAACGAGGAGGGCAAGCGATTTCATC 62
consensus_11260#1 CAG-AAGAACACTGAT-ATTGACCAG-GACG--ACAACGAGGAGGGCAACCAGTCTCATC 217
consensus_11260#0 TATGACTCCCTTCCACCAGTGATAAA-GTCAAAATTAGTGAGAAGTCAGAACAGTTAGAA 236
consensus_11260#2 TG--AACAACAATGAGGTGTGATGGTCGGCAAGATTGTCGAGACGCT--TCAGTATGAGA 88
* * * * * *
consensus_11260#3 GATATCGTCGTGCTAGGGCTTACAGATTGCTGGAAAAATTACCAGAAGCTAAATTCAAC- 179
consensus_11260#4 TGAGCCGTCTCGACAATG-TTGTATACCGTCACATCGCATTTCAGGAGT--AATACACT- 118
consensus_11260#1 TGAAGCGTCTCGACAATC-TTGCCGACCATCACAC--CTCATTTGTTGTTCAATGCATT- 273
consensus_11260#0 TACATCAAACAGCTAACTGTTTTTCATCACTGTTCACATTCCTCACATTTCTCAATGGT- 295
consensus_11260#2 CTGGTTGCCCTCCTCGTTGTCGTCCTGGTCAATATCAGTGTTCTTCTGGTGAATGCATTG 148
*
consensus_11260#3 --GACCAGAATAACAAAGAATGCGAGGTGGTTGGCAAACA------CATTTAATTTCATC 231
consensus_11260#4 --CACCAGAAGAACAAAGAATGCGAGGTGGTTGGCAAACA------CATTTAATTTCATC 170
consensus_11260#1 --CACCAGAAGAACACTGATATTGACCAGGACGACAACGAGGAGGGCAACCAGTCTCATC 331
consensus_11260#0 --CACCTAGCTAAAATGGGAAACACAGATGATATCTGACTT-ACGGCAACCAGCCTCATC 352
consensus_11260#2 AACAACAAATGAGGTGTGATTGTCTGCGAGATTGTCGAGAC-GCTTCATATAATACTGCT 207
* * * * * ** *
consensus_11260#3 AGATCCATCGGGACATTGAGTTTGTCCATCACATCTCTGAGATTG--TTGTATACAACTT 289
consensus_11260#4 AGATCCATCGGGACATTGAGTTTGTCCATCACATCTCTGAGATTG--TTGTATACAACTT 228
consensus_11260#1 TGAAGCGTCTCGACAATCTTGCCGACCATCACACCTCATTTGTTG--TTCAATGCATTCA 389
consensus_11260#0 TGAAGCGTCTCGACAATCTTGCCGACCATCACACCTCATTTGTTG--TTCAATGCATTCA 410
consensus_11260#2 TG-CCCTCTTCGTTGTCGTCCTGGTCCGTCTCAGTGCTTCTTCTGGGTGCATTGCATTGA 266
* * * * ** ** ** * ** * * **
consensus_11260#3 CCGTCATAACACATAAAGTATCCTAAACCACATCGATCTG-----G--AACTACATTGAT 342
consensus_11260#4 CCGTCATAACACATAAAGTATCCTAAACCACATCGATCTG-----G--AACTACATTGAT 281
consensus_11260#1 CCAGAAGAACACTGATATTGACCAGGACGACAACGAGGAG-----GGCAACCAGTCTCAT 444
consensus_11260#0 CCAGAAGAACACTGATATTGACCAGGACGACAACGAGGAGCTGTTGCAAAATAATTTCAT 470
consensus_11260#2 CCTGCGAATGAGGTGTGATTGTCTGCGTGATTGTCGGGAC-----GCTCCCTATGATCCT 321
** * * * * * * * * *
consensus_11260#3 T----------------------------------------------------------- 343
consensus_11260#4 TATTGAA--GCT------------------------------------------------ 291
consensus_11260#1 CTGAAGC--GTCTCGACAATCTTGCCGACCATCACACCTCATTTGTTGTTCAATGCATTC 502
consensus_11260#0 TGACAAATAAATATACTTCAGTTAATTTCGACCATGAACATTTCATCATCAAAATCATTC 530
consensus_11260#2 GCTTGACC-TCTTCGTTGTTGTCCTGGTCCGTCTCAGTGTTCTTCTGTGTGCTGTGATTG 380
consensus_11260#3 ------------------------------------------------------------
consensus_11260#4 ------------------------------------------------------------
consensus_11260#1 ACCAGAAGAACACTG--------------------------------------------- 517
consensus_11260#0 AACACGGCCACATGCAAAACAACCACTGAGGCACAAATCTTCTCTCAGTACTAGACGGGT 590
consensus_11260#2 ACCTGG------------------------------------------------------ 386
consensus_11260#3 ------------------------------------------------------------
consensus_11260#4 ------------------------------------------------------------
consensus_11260#1 ------------------------------------------------------------
consensus_11260#0 GGGTGAATACTACAAAGTTCCTATAGAATAGTTTATTATTTCAAACAGTGGTTACACACA 650
consensus_11260#2 ------------------------------------------------------------
consensus_11260#3 ------------------------------------------------------------
consensus_11260#4 ------------------------------------------------------------
consensus_11260#1 ------------------------------------------------------------
consensus_11260#0 TGAGCTCAGACCTTAAGTCGATCGACTACTACACATTCACCAACACAACCATTGCATTTT 710
consensus_11260#2 ------------------------------------------------------------
consensus_11260#3 ------------------------------------------------------------
consensus_11260#4 ------------------------------------------------------------
consensus_11260#1 ------------------------------------------------------------
consensus_11260#0 AACAGTTATCACTAACTGCTGGACTTTCTCGCACATATTCTACCATGTGATTTAGTTCGG 770
consensus_11260#2 ------------------------------------------------------------
consensus_11260#3 ------------------------------------------------------------
consensus_11260#4 ------------------------------------------------------------
consensus_11260#1 ------------------------------------------------------------
consensus_11260#0 AACACCACAATATCACACTTTTCTGGAAAGCAATGGCAATCTAAAGGTGGAATTTCTCTA 830
consensus_11260#2 ------------------------------------------------------------
consensus_11260#3 ------------------------------------------------------------
consensus_11260#4 ------------------------------------------------------------
consensus_11260#1 ------------------------------------------------------------
consensus_11260#0 GAAAACACAGTCGTCGTTATCGTCACCATTCTGTATGTCTCTGTCTCTATCATCATCAGG 890
consensus_11260#2 ------------------------------------------------------------
consensus_11260#3 ------------------------------------------------------
consensus_11260#4 ------------------------------------------------------
consensus_11260#1 ------------------------------------------------------
consensus_11260#0 ACTGTCGTCCTGACCATCACTGTCCGTTCTTATTCTACTTACTCTTCTATGTTG 944
consensus_11260#2 ------------------------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||