These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11260#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 944 fasta sequence [TAATAGG-TTTATCAAAAGCAATGGTTAGATACTAATCTAGATGGAAATAATATAATAGCTGATCAACTAACAGGAAATAACTGAAGCTAACAGAACTGAAATGATGTGAATCATTGCTATTCTATTTCCCTCGATCAATACACAATGAGTGAGCCGAGATCGCCTAAAACATATTATTATGACTCCCTTCCACCAGTGATAAAGTCAAAATTAGTGAGAAGTCAGAACAGTTAGAATACATCAAACAGCTAACTGTTTTTCATCACTGTTCACATTCCTCACATTTCTCAATGGTCACCTAGCTAAAATGGGAAACACAGATGATATCTGACTTACGGCAACCAGCCTCATCTGAAGCGTCTCGACAATCTTGCCGACCATCACACCTCATTTGTTGTTCAATGCATTCACCAGAAGAACACTGATATTGACCAGGACGACAACGAGGAGCTGTTGCAAAATAATTTCATTGACAAATAAATATACTTCAGTTAATTTCGA-CCATGAACATTTCATCATCAAAATCATTCAACACGGCCACA-TGCAAAACAACCACTGAGGCACAAATCTTCTCTCAGTACTAGACGGGTGGGTGAATACTACAAAGTTCCTATAGAATAGTTTATTATTTCAAACAGTGGTTACACACATGAGCTCAGACCTTAAGTCGATCGACTACTACACATTCACCAACACAACCATTGCATTTTAACAGTTATCACTAACTGCTGGACTTTCTCGCACATATTCTACCATGTGATTTAGTTCGGAACACCACAATATCACACTTTTCTGGAAAGCAATGGCAATCTAAAGGTGGAATTTCTCTAGAAAACACAGTCGTCGTTATCGTCACCATTCTGTATGTCTCTGTCTCTATCATCATCAGGACTGTCGTCCTGACCATCACTGTCCGTTCTTATTCTACTTACTCTTCTATGTTG] [+] EMBL CD089035 [TAATAGG TTTATCAAAAGCAATGGTTAGATACTAATCTAGATGGAAATAATATAATAGCTGATCAACTAACAGGAAATAACTGAAGCTAACAGAACTGAAATGATGTGAATCATTGCTATTCTATTTCCCTCGATCAATACACAATGAGTGAGCCGAGATCGCCTAAAACATATTATTATGACTCCCTTCCACCAGTGATAAAGTCAAAATTAGTGAGAAGTCAGAACAGTTAGAATACATCAAACAGCTAACTGTTTTTCATCACTGTTCACATTCCTCACATTTCTCAATGGTCACCTAGCTAAAATGGGAAACACAGATGATATCTGACTTACGGCAACCAGTCTCATCTGAAGCGTCTCGACAATCTTGCCGACCATCACACCTCATTTGTTGTTCAATGCATTCACCAGAAGAACACTGATATTGACCAGGACGACAACGAGGAGCTGTTGCAAAATAATCTCATTGACAAATAAATATACTTCAGTTAATTTCGA CCATGAACATTTCATCATCAAAATCATTCAACACGGCCACA TGCAAAACAACCACTGAGGatgtcc ] [+] EMBL CD089090 [TAATAGG TTTATCAAAAGCAATGGTTAGATACTAATCTAGATGGAAATAATATAATAGCTGATCAACTAACAGGAAATAACTGAAGCTAACAGAACTGAAATGATGTGAATCATTGCTATTCTATTTCCCTCGATCAATACACAATGAGTGAGCCGAGATCGCCTAAAACATATTATTATGACTCCCTTCCACCAGTGATAAAGTCAAAATTAGTGAGAAGTCAGAACAGTCAGAATACATCAAACAGCTAACTGTTTTTCGTCACTGTTCACATTCCTCACATTTCTCAATGGTCACCTAGCTAAAATGGGAAACACAGATGATATCTGACTTACGGCAACCAGCCTCATCTGAAGCGTCTCGACAATCTTGCCGACCATCACACCTCATTTGTTGTTCAATGCATTCACCAGAAGAACACTGATATTGACCAGGACGACAACGAGGAGCTGTTGCAAAATAATTTCATTGACAAATAAATATACTTCAGTTAATTTCGA CCATGAACATTTCATCATCANAATCATTCAACACGGCCACA TGCAAAACAA ] [+] EMBL CD089135 [TAATAGG TTTATCAAAAGCAATGGTTAGATACTAATCTAGATGGAAATAATATAATAGCTGATCAACTAACAGGAAATAACTGAAGCTAACAGAACTGAAATGATGTGAATCATTGCTATTCTATTTCCCTCGATCAATACACAATGAGTGAGCCGAGATCGCCTAAAACATATTATTATGACTCCCTTCCACCAGTGATAAAGTCAAAATTAGTGAGAAGTCAGAACAGTTAGAATACATCAAACAGCTAACTGTTTTTCATCACTGTTCACATTCCTCACATTTCTCAATGGTCACCTAGCTAAAATGGGAAACACAGATGATATCTGACTTACGGCAACCAGCCTCATCTGAAGCGTCTCGACAATCTTGCCGACCATCACACCTCATTTGTTGTTCAATGCATTCACCAGAAGAACACTGATATTGACCAGTACGACAACGAGGAGCTGTTGCCAAATAATTTCATTGACAAATAAATATACTTCAGTTAATTTCGA CCATGAACATTTCATCATCCAAATCATTCACCATGTCCACATTGCAAAca ] [+] EMBL CD089138 [TAATAGGCTTTATCAAAAGCAATGGTTAGATACTAATCTAGATGGAAATAATATAATAGCTGATCAACTAACAGGAAATAACTGAAGCTAACAGAACTGAAATGATGTGAATCATTGCTATTCTATTTCCCTCGATCAATACACAATGAGTGAGCCGAGATCGCCTAAAACATATTATTATGACTCCCTTCCACCAGTGATAAAGTCAAAATTAGTGAGAAGTCAGAACAGTTAGAATACATCAAACAGCTAACTGTTTTTCATCACTGTTCACATTCCTCACATTTCTCAATGGTCACCTAGCTAAAATGGGAAACACAGATGATATCTGACTTACGGCAACCAGCCTCATCTGAAGCGTCTCGACAATCTTGCCGACCATCACACCTCATTTGTTGTTCAATGCATTCACCAGAAGAACACTGATATTGACCAGGACGACAACGAGGAGCTGTTGC AAATAATTTCATTGACAAATAAATATACTTCAGCTAATTTCCACCCATG ACATTTCATCATCAAAATCATTCACCACGCCCACA TGCAAAACc ] [+] EMBL CD089116 [TAATAGG TTTATCAAAAGCAATGGTTAGATACTAATCTACATGGAAATAATATAATAGCTGATCAACTAACAGGAAATACCTGAAGCTAACAGAACTGAAATGATGTGAATCATTGCTACTCTATTTCCCTCGATCAATACACAATGAGTGAGCCGAGATCGCCTAAAACATATTATTATGACTCCCTTCCACCACTGATAAAGTCAc ] [-] EMBL CD089027 [ AATAGG TTTATCAAAAGCAATGGTTAGATACTAATCTAGATGGAAATAATATAATAGCTGATCAACTAACAGGAAATAACTGAAGCTAACAGAACTGAAATGATGTGAATCATTGCTATTCTATTTCCCTCGATCAATACACAATGAGTGAGCCGAGATCGCCTAAAACATATTATTATGACTCCCTTCCACCAGTGATAAAGTCAAAATTAGTGAGAAGTCAGAACAGTTAGAATACATCAAACAGCTAACTGTTTTTCATCACTGTTCACATTCCTCACATTTCTCAATGGTCACCTAGCTAAAATGGGAAACACAGATGATATCTGACTTACGGCAACCAGCCTCATCTGAAGCGTCTCGACAATCTTGCCGACCATCACACCTCATTTGTTGTTCAATGCATTCACCAGAAGAACACTGATATTGACCAGGACGACAACGAGGAGCTGTTGCAAAATAATTTCATTGACAAATAAATATACTTCAGTTAATTTCGA CCATGAACATTTCATCATCAAAATCATTCAACACGGCCACA TGCAAAACAA ] [+] EMBL CD091052 [ A CCATGAACATTTCATCATCAAAATCATTCAACACGGCCACA TGCAAAACAACCACTGAGGCACAAATCTTCTCTCAGTACTAGACGGGTGGGTGAATACTACAAAGTTCCTATAGAATAGTTTATTATTTCAAACAGTGGTTACACACATGAGCTCAGACCTTAAGTCGATCGACTACTACACATTCACCAACACAACCATTGCATTTTAACAGTTATCACTAACTGCTGGACTTTCTCGCACATATTCTACCATGTGATTTAGTTCGGAACACCACAATATCACACTTTTCTGGAAAGCAATGGCAATCTAAAGGTGGAATTTCTCTAGAAAACACAGTCGTCGTTATCGTCACCATTCTGTATGTCTCTGTCTCTATCATCATCAGGACTGTCGTCCTGACCATCACTGTCCGTTCTTATTCTACTTACTCTTCTATGTTG] [-] EMBL CD090978 [ ATCAAAATCATTCAACACGGCCACA TGCAAAACAAGCACTGAGGCACAAATCTTCTCTCAGTACTAGACGGGTGGGTGAATACTACAAAGTTCCTATAGAATAGTTTATTATTTCAAACAGTGGTTACACACATGAGCTCAGACCTTAAGTCGATCGACTACTACACATTCACCAACACAACCATTGCATTTTAACAGTTATCACTAACTGCTGGACTTTCTCGCACATATTCTACCATGTGATTTAGTTCGGAACACCACAATATCACACTTTTCTGGAAAGCAATGGCAATCTAAAGGTGGAATTTCTCTAGAAAACACAATCGTCGTTATCGTCACCATTCTGTATGTCTCTGTCTCTATCATCATCAGGACTGTCGTCCTGACCATCACTGTCTGTTCTTATTCTACTTACT ] consensusID : consensus_11260#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 32 consensus length = 517 fasta sequence [GACAATCTGNCCGACCATCACACNTCATNTGTTGTTCAATGCATTCACCAGAAGAACACTGATATTGACCAGGACGACAACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACA-ATCT-T-G-CCGACCATCAC-AC-CTCATT-TGTTGTTCAA-TGCATTCACCAG-AAGAACACTGATATTGACCAGGACGACAACG-AGGAGGGCAACCAGTCTCAT-CTGAAGCGTCTCG-AC-AATCTTGCCGA-CCATCACACCTC-AT-TTGTTGTTCA-A-TGCATTC-A-CC-A-GAAGAACAC-TGATATTGA-CCAGGACGACAA-CG-AGGAGGGCAA-CCAGTCTCATCTGAAGCGTCTCGACAATCTTGCCGACCATCACACCT-CATTTGTTGTTCAATGCATTCACCAGAAGAACACTGATATTGACCAGGACGACAACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACAATCTTGCCGACCATCACACCTCATTTGTTGTTCAATGCATTCACCAGAAGAACACTG] [-] EMBL CD201778 [GACAATCTGNCCGACCATCACACNTCATNTGTTGTTCAATGCATTCACCAGAAGAACACTGATATTGACCAGGACGACAACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACA ATCT T G CCGACCATCAC AC CTCATT TGTTGTTCAA TGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAACCAGTCTCAT CTGAAGCGTCTCG AC AATCTTGCCGA CCATCACACCTC AT TTGTTGTTCA A TGCATTC A CC A GAAGAACAC TGATATTGA CCAGGACGACAA CG AGGAGAGCAA CCAGTCTCATCTGAAGCGTCTCGACAATCTTGCCGACCATCACACCT CATTTGTTGTTCAATGCATTCACCAGAAGAACACTGATATTGACCAGGACGACAACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACAATCTTGCCGACCATCACACCTCATTTGTTGTTCAATGCATTCACCAGAAGAACACTG] [+] EMBL CD166529 [ GTTG TCAATGCATTCACCAGAAGAACACTGATATTGACCAGGACGACAACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACA ATCT T G CCGACCATCAC AC CTCATT TGTGGTTCAA TGCAGTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAA ] [+] EMBL CD166675 [ gacGCA TCACCAGAAGAACACTGATA TGACCAGGACGAC ACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACA ATCT T G CCGACCATCAC AC CTCATT TGTTGTGCAAGTGCATCCACCAGTAAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAACCAGTCTCAT CTGAAGCGTCTCG ACGAATCTTGCCGA CCATCACACCTC AT TTG ] [-] EMBL CD166836 [ TTCACCAGAAGAACACTGATATTGACCAGGACGACAACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACC ATCT T C CCGACCATCAC AC CTCATT TGTTGTTCAA TGCTTTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAACCAGTCTCATACTGAAGCGTCTCG AC AATCTTGCCGA CCATCACACCTC AT TTGTTGTTCA A TGCATTC A CC A GAAGAACAC TGATAGTGA CCAGGACGACAA CG AGGAGGGCAAGCCAGTCTCATCTGATGCGT ] [+] EMBL CD064312 [ CCAGAAGAACACTGATATTGACCAGGACGACAACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACA ATCT T GTCCGACCATCAC AC CTCATTCTGTTGTACAA TGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAACCAGTCTC ] [-] EMBL CD166531 [ CAGAAGAACACTGATATTGACCAGGACGACAACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACA ATCT T G CCGACCATCAC AC CTCATT TGTTGTTCAA TGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGA GGCAACCAG ] [+] EMBL CD166554 [ AACACTGATA TGACCAGGACGACAACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACA ATCT T G CCGACCATCAC AC CTCATT TGTTGTTCAA TGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAACCAGTCTCAT CTGAAGCGTCTCGTAC AATCTTGCCG ] [+] EMBL CD064037 [ AACACTGATA TGACCAGGACGACAACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACA ATCT T G CCGACCATCAC AC CTCATT TGTTGTTCAA TGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAAC ] [-] EMBL CD064066 [ AACACTGATATTGACCAGGACGACAACGAGGAGGGCAACCAGTCTCGTCTGAAGCGTCTCGACA ATCT T G CCGACCATCAC AC CTCATT TGTTGTTCAA TGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAAC ] [+] EMBL CD064052 [ AACACTGATA TGA CAGGACGACAACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACA ATCT T G CCGAACATCACTAC CTCATT TGTTGTTCAA TGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAACCAGTCTCAT CTGAAGCGTCTCG AC GATCTTGCCGA ACATCATACCTCTAT TTGTGGTTCA A TGCATTC A CC A GAAGAACACGTGATATTGA CCAGGACGACAA CG AGGAGGGCAAGCCAGTCTCATCTGAAGCGTCTCGACAAACTTGGCGAACATCATACATGCATTTGTGGTTCAATGCATTCACGAGAAGAACACTGATATTGACCAGGACGACCACGAGGA GGCAAg ] [+] EMBL CD064287 [ ACACTGATATTGACCAGGACGACAACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACA ATCT T G CCGACCATCAC AC CTCATT TGTTGTTCAA TGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAACCAGTCTCAT CTGAAGCGTCTCG AG AATCTTGCCGA ACATCACACCTC AT TTGTTGTGCA A GGCATTC AGCC A GAAGAACAC TGATATTGAGCCAGGACGACCA CT AGGAGGGCAA C ] [+] EMBL CD063997 [ CACTGATATTGACCAGGACGACAACGAGGAGGGC ACCAGTCTCATCTGAAGCGTCTCGACA ATCT T G CCGACCATCAC AC CTCATT TGTTGTTCAA TGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAATCAGTCTCAT CTGAAGCGTCTCG AC AATCTTGCCGA CCATCACACCTC AT TTGTAGTTCATAGTGCATTC A CC A GAAGAAC ] [+] EMBL CD166526 [ CACTGATATTGACCAGGACGACAACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACG ATCT T G CCGACCATCAC ACGCTCATT TGTTGTTCAAGTGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAACCAGTCTCAT CTGAATCGTTTCG AC AATCTTGTAGAGCTATAACAGCTC AT TTGTAGTCCA G TGCATTCGA CCGA GAAGAACAC TGATATTGA CCAGGACGACCC TG AGGAGGGCAA CCAGTCTCATCTGAAGCGTCTCGACAATCTTGCCGAGCATCACAGCT CATTTGTTGTTCAATGCATTCACCAGAAGAACACTGATATTGA ] [+] EMBL CD064032 [ CACTGATATTGACCAGGACGAC ACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACA ATCT T G CCGAGCATCAC AC CTCATT TG TGTTCAA TGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAACCAGTCTCAT CTGAAGCGTCTCG AC AATCTTGCCGA CCATCACACC ] [+] EMBL CD166780 [ CACTGATATTGACCAGGACGACAACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACA ATCT T G CCGACCATCAC AC CTCATT TGTTGTTCAA TGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAACCAGTCTCAT CTGAAGCGTCTCG AC CATCTTGCCGA ] [-] EMBL CD063999 [ ACTGATATTGACCAGGACGACAACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACA ATCT T G CCGACCATCAC AC CTCATT TGTTGTTCAA TGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAACCAGTCTCAT CTGAAGCGTCTCG AC AATCTTGCCGA CCATCACACCTC ATATTGTTGTTCA A TGCATTC A CC A GAAGAACAC TGATATTGA CCAGGACGACAANCG AGGAGGGCAA CC ] [-] EMBL CD166686 [ ACTGATATTGACCAGTACGACCACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACA ATCT T G CCGACCATCAC AC CTCATT TGTTGTCCAA TGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAACCAGTCTCAT CTGAAGCGTCTCG AC AATCTTGCCGA CCATCACACCTC AT TTGTTGTTCA A TGCA TC A CC A GAAGAACAC TGATA TGA CCAGGACGACAA CG A ] [-] EMBL CD166690 [ ACTGATATTGACCAGGACGACAACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACA ATCT T G CCGACCATCAC AC CTCATT TGTTGTTCAA TGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAACCAGTCTCAT CTGAAGCGTCTCG AC AATCTTGCCGA CCATCACACCTC AT TTGTTGTTCA A TGCATTC A CC A GAAGAACAC TGATA TGA C GGACGACAA CG AGGAGGGCAA CCA TCTCATCTGATGCGTC ] [-] EMBL CD126754 [ CTGATATTGACCAGGACGACAACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACA ATCT T G CCGACCATCAC AC CTCATT TGTTGTTCAA TGCATTCACCAG AAGAACACTGATATTGACCA GACGACAACG AGGAGGGCAACCAGTCTC ] [-] EMBL CD166638 [ GATATTGACCAGGACGACAACGACGAGGGCAACCAGTCTCATATGAAGCGTCTCGACA ATGT T C CCGACCATCAC AC CTCATT TGTTGTTCAA TGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAACCAGTCTCAT CTGAAGCGTCTCG AC AATCTTGCCGA CCATCACACCTC AT TTGTTGTTCA A TGCATTC A CC A GAAGAACAC TGATA TGA CCtg ] [-] EMBL CD166741 [ ATTGACCAGGACGACAACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACA ATCT T G CCGACCATCAC AC CTCATT TGTTGTTC ] [+] EMBL CD064286 [ ATTGACCAGGACGACAACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACA ATCTCT GTCCGAACATCAC AC CTCA T TGTTGTTCAA TGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACGTAGGAGGGCAACCAGTCTCAT CTGAAGCGTCTCG AC AATCTTGCCGA ACATCACACCTC AT TTGTTGTTCATA TGCATTC A CC AGGAAGAACAC TGATATTGA CCAGGACGACAA CGTAGGAGGGCAA C ] [+] EMBL CD064039 [ CGACAACGAGGAGGGC ACCAGTCTCATCTGAAGCGT TCGACA ATCT T G CCGACCATCAC AC CTCATT TGTTGTTCAA TGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAAC ] [-] EMBL CD166577 [ GACAACGAGGAGGGCTACCAGTCTCATCTGAAGCGTCTCGACA ATCT T G CCGACCATCAC AC CTCATT TGTTGTTCAA TGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAACCAGTCTCAT CTGAAGCGTCTCG AC AATCCTGCCGG CCATCACc ] [-] EMBL CD166564 [ CACCGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACA ATCT T G CCGACCATCAC AC CTCATT TGTTGTTCAA TGCATTCACCAG AAGAACACTGATATTGACCAGGACGACACCG AGGAGGGCAACCAGTCTCAT CTGAAGCGTCTCG AC AATCTTGCCGA CCATCACACCTC AT TTGTTGTTCA A TGCATTC A CC A GAAGAACAC TGATATTGA CCAGGACGACCA CG AGGAGGGCAA CCAGTCTCATCTGAAGCGTCTCGACAATCTTGCCGACCATCACACCT CATTTGTTGTTCAATGCATTCACCAGAAGAACACTGATATTGACCAGGACGACAACGAGGAGGGCAACCAGTCTCATCTGAAGCGTCTCGACAATCTTGCCGACCATCACACCTCATTTGTTGTTCAATGCAggtaccg ] [+] EMBL CD063973 [ GAGGAGGGCA CAGTCTCATCTGAAGCGTCTCGACA ATC T G CCGACCATCAC AC CTCATT TGTTGTTCAA TGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAACCAGTCTCAT CTGAATCGTTTCG AC AATCTTGCCGA CCATCAAACCTC AT TTGT ] [+] EMBL CD180278 [ AGGGCAACCAGTCTCATCTGAAGCGTCTCGACAGATCT T G CCGACCATCAC AC CTCATT TGTTGTTCAA TGCATTCACCAG AAGAACACTGATATTGTCCAGGACGATAACG AGGAGGGCGACCAGTCTCAT C ] [+] EMBL CD166848 [ gaAAGCGTCTCGACA ATCT T G CCGACCATCAC AC CTCATT TGTTGTTCAA CGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAAC ] [+] EMBL CD166695 [ CT TCG ACGACATTCAC AC CTCATT TGTTG TCAA TGCATTCACCAG AGGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAACCAGTCTCAT CTGAAGCGTCTCG AC AATCTTGCCGA ACATCACACCTC AT TTGTTGTTCA A TGCATTC A CC A GAAGAACAC TGATATTGA CCAGGACGACAA CG AGGAGGGCAA C ] [-] EMBL CD064251 [ T T G CCGACCATCAC AC CTCATT TGTTCTTCAA TGCATTCACCAG AAGAACACTGATATTGACCAGGACGACAACG AGGAGGGCAACCAGTCTCAT CTGAAGCGTCTCG AC AATCTTGCCGA CCATCACACCTC AT TTCTTGTTCA A TGCATTC A CC A GAAGAACAC TGATATTGA CCAGGACGACAA CG AGGAGGGCAA CCAGTCTCATCTGAAGCGTCTCGACAATCTTGCCGACCATCACACCT CATTTGTTGTTCAATGCATTCACCAGAAGAACACTGATA TGACCAGGACGACAACGAGGAGGGCAACC GTCTCATC ] [-] EMBL CD064291 [ G CCGACCATCAC AC CTCATT TGTTGTTCAA CGCATTCACCAG AAGAACACTGATATGGACCAGGACGACAACG AGGAGGGCAACCAGTCTCAT CTGAAGCGTCTCG AC AATCTTGCCGA CCATCACACCTC AT TTGTTGTTCA A TGCATTC A CC A GAAGAACAC TGATAGTGA CCAGGACGACAA CG AGGAGGGTAA CCAGTCTCATCTGAAGCGTCTCGACAATCTTGCCGACCATCACACCT CAT ] [-] EMBL CD166634 [ caTCATT TGTTGTTCAA CGCATTCACCAG AAGAACACTGATAGTGACCAGGACGACAACG AGGAGGGCAACCAGTCTCAT CTGAAGCGTCTAG AC AATCTTGCCGA CCATCACACATC AT TTGTTGTTCA A TGCATTC A CC A GAAGAACAC TGATATTGA CCAGGACGACAA CG AGGAGGGCAA CCAGTCTCATCTAAAGCGTCTAGACAATCTTGCCGACCATCACACCT CATTTGTTGTTCAATGCATTCACCAGAAGAACACTGATA TGACCAGGACGAC ACGAGGAGGGCAACCAGT ] consensusID : consensus_11260#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 386 fasta sequence [TGGTCATATCAGTGTTCTTCTGGTGAATGCATTGAACAACAATGAGGTGTGATGGTCGGCAAGATTGTCGAGACGCTTCAGTATGAGACTGGTTGCCCTCCTCGTTGTCGTCCTGGTCAATATCAGTGTTCTTCTGGTGAATGCATTGAACAACAAATGAGGTGTGATTGTCTGCGAGATTGTCGAGACGCTTCATATAATACTGCTTGCCCTCTTCGTTGTCGTCCTGGTCCGTCTCAGTGCTTCTTCTGGGTGCATTGCATTGACCTGCGAATGAGGTGTGATTGTCTGCGTGATTGTCGGGACGCTCCCTATGATCCTGCTTGACCTCTTCGTTGTTGTCCTGGTCCGTCTCAGTGTTCTTCTGTGTGCTGTGATTGACCTGG] [+] EMBL CD064200 [TGGTCATATCAGTGTTCTTCTGGTGAATGCATTGAACAACAATGAGGTGTGATGGTCGGCAAGATTGTCGAGACGCTTCAGTATGAGACTGGTTGCCCTCCTCGTTGTCGTCCTGGTCAATATCAGTGTTCTTCTGGTGAATGCATTGAACAACAAATGAGGTGTGATTGTCTGCGAGATTGTCGAGACGCTTCATATAATACTGCTTGCCCTCTTCGTTGTCGTCCTGGTCCGTCTCAGTGCTTCTTCTGGGTGCATTGCATTGACCTGCGAATGAGGTGTGATTGTCTGCGTGATTGTCGGGACGCTCCCTATGATCCTGCTTGACCTCTTCGTTGTTGTCCTGGTCCGTCTCAGTGTTCTTCTGTGTGCTGTGATTGACCTGG] consensusID : consensus_11260#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 343 fasta sequence [CACCACGTTGTTACATGTACACAGCTATAGCTGAAATCTTACTAAAAAAAGCTGCCTACAAGTCACAATTAGAATCATTTCTTGTCGGTCATGTCCTTCCGACTTGGCATGCTCCTGAAGGATATCGTCGTGCTAGGGCTTACAGATTGCTGGAAAAATTACCAGAAGCTAAATTCAACGACCAGAATAACAAAGAATGCGAGGTGGTTGGCAAACACATTTAATTTCATCAGATCCATCGGGACATTGAGTTTGTCCATCACATCTCTGAGATTGTTGTATACAACTTCCGTCATAACACATAAAGTATCCTAAACCACATCGATCTGGAACTACATTGATT] [+] EMBL CD061364 [CACCACGTTGTTACATGTACACAGCTATAGCTGAAATCTTACTAAAAAAAGCTGCCTACAAGTCACAATTAGAATCATTTCTTGTCGGTCATGTCCTTCCGACTTGGCATGCTCCTGAAGGATATCGTCGTGCTAGGGCTTACAGATTGCTGGAAAAATTACCAGAAGCTAAATTCAACGACCAGAATAACAAAGAATGCGAGGTGGTTGGCAAACACATTTAATTTCATCAGATCCATCGGGACATTGAGTTTGTCCATCACATCTCTGAGATTGTTGTATACAACTTCCGTCATAACACATAAAGTATCCTAAACCACATCGATCTGGAACTACATTGATT] consensusID : consensus_11260#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 291 fasta sequence [ACGCATCACAGAAGAACACTGATATTGACCAGGA-GACAACGAGGAGGGCAAGCGATTTCATCTGAGCCGTCTCGACAATGTTGTATACCGTCACATCGCATTTCAGGAGTAATACACTCACCAGAAGAACAAAGAATGCGAGGTGGTTGGCAAACACATTTAATTTCATCAGATCCATCGGGACATTGAGTTTGTCCATCACATCTCTGAGATTGTTGTATACAACTTCCGTCATAACACATAAAGTATCCTAAACCACATCGATCTGGAACTACATTGATTATTGAAGCT] [+] EMBL CD166597 [ACGCATCACAGAAGAACACTGATATTGACCAGGA GACAACGAGGAGGGCAAGCGATTTCATCTGAGCCGTCTCGACAATGTTGTATACCGTCACATCGCATTTCAGGAGTAATACA ] [-] EMBL CD119638 [ GAGCAGTGATATTGACCAGGACGACAACGAGGAGGGCAAGCGATTTCATATGAGTCGTCTCGACAATGTTGTATACCGTCACATCGCATTTCAGGAGTAATACACTCACCAGAAGAACAAAGAATGCGAGGTGGTTGGCAAACACATTTAATTTCATCAGATCCATCGGGACATTGAGTTTGTCCATCACATCTCTGAGATTGTTGTATACAACTTCCGTCATAACACATAAAGTATCCTAAACCACATCGATCTGGAACTACATTGATTATTGAAGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11260#3 ------------------------------------------------------------ consensus_11260#4 ------------------------------------------------------------ consensus_11260#1 ------------------GACAATCTGNCCGACCATCACACNTCATNTGTTGTTCAATGC 42 consensus_11260#0 TAATAGGTTTATCAAAAGCAATGGTTAGATACTAATCTAGATGGAAATAATATAATAGCT 60 consensus_11260#2 ------------------------------------------------------------ consensus_11260#3 -----------------------------------------------------CACCACG 7 consensus_11260#4 ------------------------------------------------------------ consensus_11260#1 ATTCACCAGAAGAACACTGATATTGACCAGGACGACAACGAGGAGGGCAACCAGTCTCAT 102 consensus_11260#0 GATCAACTAACAGGAAATAACTGAAGCTAACAGAACTGAAATGATGTGAATCATTGCTAT 120 consensus_11260#2 ------------------------------------------------------------ consensus_11260#3 TTGTTACATGTACACAGCTATAGCTGAAATCTTACTAAAAAAAGCTGCCTACAAGT-CAC 66 consensus_11260#4 --------------------------------------------------ACGCAT-CAC 9 consensus_11260#1 CTGAAGCGTCTCGACAATCTTGCCGACCATCACACCTCATTTGTTGTTCAATGCATTCAC 162 consensus_11260#0 TCTATTTCCCTCGATCA--ATACACAATGAGTGAGCCGAGATCGCCTAAAACATAT-TAT 177 consensus_11260#2 ----------------------------TGGTCATATCAGTGTTCTTCTGGTGAATGCAT 32 * * consensus_11260#3 AATTAGAATCATTTCTTGTCGGTCAT-GTC---CTTCCGACTTGG-CATGCT-CCTGAAG 120 consensus_11260#4 AG--AAGAACACTGAT-ATTGACCAG-GAG---ACAACGAGGAGGGCAAGCGATTTCATC 62 consensus_11260#1 CAG-AAGAACACTGAT-ATTGACCAG-GACG--ACAACGAGGAGGGCAACCAGTCTCATC 217 consensus_11260#0 TATGACTCCCTTCCACCAGTGATAAA-GTCAAAATTAGTGAGAAGTCAGAACAGTTAGAA 236 consensus_11260#2 TG--AACAACAATGAGGTGTGATGGTCGGCAAGATTGTCGAGACGCT--TCAGTATGAGA 88 * * * * * * consensus_11260#3 GATATCGTCGTGCTAGGGCTTACAGATTGCTGGAAAAATTACCAGAAGCTAAATTCAAC- 179 consensus_11260#4 TGAGCCGTCTCGACAATG-TTGTATACCGTCACATCGCATTTCAGGAGT--AATACACT- 118 consensus_11260#1 TGAAGCGTCTCGACAATC-TTGCCGACCATCACAC--CTCATTTGTTGTTCAATGCATT- 273 consensus_11260#0 TACATCAAACAGCTAACTGTTTTTCATCACTGTTCACATTCCTCACATTTCTCAATGGT- 295 consensus_11260#2 CTGGTTGCCCTCCTCGTTGTCGTCCTGGTCAATATCAGTGTTCTTCTGGTGAATGCATTG 148 * consensus_11260#3 --GACCAGAATAACAAAGAATGCGAGGTGGTTGGCAAACA------CATTTAATTTCATC 231 consensus_11260#4 --CACCAGAAGAACAAAGAATGCGAGGTGGTTGGCAAACA------CATTTAATTTCATC 170 consensus_11260#1 --CACCAGAAGAACACTGATATTGACCAGGACGACAACGAGGAGGGCAACCAGTCTCATC 331 consensus_11260#0 --CACCTAGCTAAAATGGGAAACACAGATGATATCTGACTT-ACGGCAACCAGCCTCATC 352 consensus_11260#2 AACAACAAATGAGGTGTGATTGTCTGCGAGATTGTCGAGAC-GCTTCATATAATACTGCT 207 * * * * * ** * consensus_11260#3 AGATCCATCGGGACATTGAGTTTGTCCATCACATCTCTGAGATTG--TTGTATACAACTT 289 consensus_11260#4 AGATCCATCGGGACATTGAGTTTGTCCATCACATCTCTGAGATTG--TTGTATACAACTT 228 consensus_11260#1 TGAAGCGTCTCGACAATCTTGCCGACCATCACACCTCATTTGTTG--TTCAATGCATTCA 389 consensus_11260#0 TGAAGCGTCTCGACAATCTTGCCGACCATCACACCTCATTTGTTG--TTCAATGCATTCA 410 consensus_11260#2 TG-CCCTCTTCGTTGTCGTCCTGGTCCGTCTCAGTGCTTCTTCTGGGTGCATTGCATTGA 266 * * * * ** ** ** * ** * * ** consensus_11260#3 CCGTCATAACACATAAAGTATCCTAAACCACATCGATCTG-----G--AACTACATTGAT 342 consensus_11260#4 CCGTCATAACACATAAAGTATCCTAAACCACATCGATCTG-----G--AACTACATTGAT 281 consensus_11260#1 CCAGAAGAACACTGATATTGACCAGGACGACAACGAGGAG-----GGCAACCAGTCTCAT 444 consensus_11260#0 CCAGAAGAACACTGATATTGACCAGGACGACAACGAGGAGCTGTTGCAAAATAATTTCAT 470 consensus_11260#2 CCTGCGAATGAGGTGTGATTGTCTGCGTGATTGTCGGGAC-----GCTCCCTATGATCCT 321 ** * * * * * * * * * consensus_11260#3 T----------------------------------------------------------- 343 consensus_11260#4 TATTGAA--GCT------------------------------------------------ 291 consensus_11260#1 CTGAAGC--GTCTCGACAATCTTGCCGACCATCACACCTCATTTGTTGTTCAATGCATTC 502 consensus_11260#0 TGACAAATAAATATACTTCAGTTAATTTCGACCATGAACATTTCATCATCAAAATCATTC 530 consensus_11260#2 GCTTGACC-TCTTCGTTGTTGTCCTGGTCCGTCTCAGTGTTCTTCTGTGTGCTGTGATTG 380 consensus_11260#3 ------------------------------------------------------------ consensus_11260#4 ------------------------------------------------------------ consensus_11260#1 ACCAGAAGAACACTG--------------------------------------------- 517 consensus_11260#0 AACACGGCCACATGCAAAACAACCACTGAGGCACAAATCTTCTCTCAGTACTAGACGGGT 590 consensus_11260#2 ACCTGG------------------------------------------------------ 386 consensus_11260#3 ------------------------------------------------------------ consensus_11260#4 ------------------------------------------------------------ consensus_11260#1 ------------------------------------------------------------ consensus_11260#0 GGGTGAATACTACAAAGTTCCTATAGAATAGTTTATTATTTCAAACAGTGGTTACACACA 650 consensus_11260#2 ------------------------------------------------------------ consensus_11260#3 ------------------------------------------------------------ consensus_11260#4 ------------------------------------------------------------ consensus_11260#1 ------------------------------------------------------------ consensus_11260#0 TGAGCTCAGACCTTAAGTCGATCGACTACTACACATTCACCAACACAACCATTGCATTTT 710 consensus_11260#2 ------------------------------------------------------------ consensus_11260#3 ------------------------------------------------------------ consensus_11260#4 ------------------------------------------------------------ consensus_11260#1 ------------------------------------------------------------ consensus_11260#0 AACAGTTATCACTAACTGCTGGACTTTCTCGCACATATTCTACCATGTGATTTAGTTCGG 770 consensus_11260#2 ------------------------------------------------------------ consensus_11260#3 ------------------------------------------------------------ consensus_11260#4 ------------------------------------------------------------ consensus_11260#1 ------------------------------------------------------------ consensus_11260#0 AACACCACAATATCACACTTTTCTGGAAAGCAATGGCAATCTAAAGGTGGAATTTCTCTA 830 consensus_11260#2 ------------------------------------------------------------ consensus_11260#3 ------------------------------------------------------------ consensus_11260#4 ------------------------------------------------------------ consensus_11260#1 ------------------------------------------------------------ consensus_11260#0 GAAAACACAGTCGTCGTTATCGTCACCATTCTGTATGTCTCTGTCTCTATCATCATCAGG 890 consensus_11260#2 ------------------------------------------------------------ consensus_11260#3 ------------------------------------------------------ consensus_11260#4 ------------------------------------------------------ consensus_11260#1 ------------------------------------------------------ consensus_11260#0 ACTGTCGTCCTGACCATCACTGTCCGTTCTTATTCTACTTACTCTTCTATGTTG 944 consensus_11260#2 ------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||