cluster # 1139

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Schistosoma mansoni
cluster # 1139 cluster # 1139 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1139#0 length = 976 sequences # 1

consensus_1139#1 length = 326 sequences # 1

consensusID : consensus_1139#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 976
fasta sequence

                              [GTTCACTATCGAAATTATGCTGCTATAACACAACCATATTTATGTAATAATAATGATAATAGTGATAATAATAATAAAAGCTCAACATCTGATTACGTGCCTAGTCAAAATGAAAATAATAATTCAACTCATGTACAAAATAATGCCATGAATAATTCTGTGAATATAACTAATAATATTGTATTTGAACAAGAGAATACCGCTAATGCTGACGATTTTTTACCGACACTAATTTGGATTGTACTAAATTCAAATCCACCATTAATCTATTCTAATTTACAATTTATTATGAGATTTGCTAATCAGAATAGACTGAATAGTGGTGAAGCTGGTTATTTCTTCACGAATTTATCTTGTGCTGTTCACTTCTTGAGGAATCTAACTCATGAATCATTAAGTTTATCCGAAGAAGATTTTAATCGATGTATGCGAAAAGGTTTATTATTAATCAGACGTCCTGGTGAACCATTATCAGAAAACGAAAAATTATTAATGGACAATGGAATTCGTCTTGCAGATTTAGAAGATAGCTTANACGATTTGAATACAAAATTAGAATCAGCTGAATCCGATATGAAACGATTTCATGAATATTNTCATCATGAAATANAACANATACGAANCAATATTCCATTGAATGTACGTATAGATGATTTAGATTCACGTCATTTAGAGAATCACATATTTTATTATTANGTCCATTATGTAAAATCAATCGACAAAATGAATCATTATTAGACTGTGAATTGGATGAGACTACAANTCGTCTATTACAGATCCTATACACCNGNCTNCATATGATGCTGNTAATCATTGNAAAAAAAAGTTTGTAAATCATCACANTCATTTACTNATTNCTAAGNTAATTTTTAATAATATCAACTTTTAATCTCCATGGAATGNNATTTNAANTTCGAAAAATCCATTTATTTCTTCCCAANGGNTTTTTGGNTGTTANGGAAACACCCAAAATTAG]

[+] EMBL CD082439             [GTTCACTATCGAAATTATGCTGCTATAACACAACCATATTTATGTAATAATAATGATAATAGTGATAATAATAATAAAAGCTCAACATCTGATTACGTGCCTAGTCAAAATGAAAATAATAATTCAACTCATGTACAAAATAATGCCATGAATAATTCTGTGAATATAACTAATAATATTGTATTTGAACAAGAGAATACCGCTAATGCTGACGATTTTTTACCGACACTAATTTGGATTGTACTAAATTCAAATCCACCATTAATCTATTCTAATTTACAATTTATTATGAGATTTGCTAATCAGAATAGACTGAATAGTGGTGAAGCTGGTTATTTCTTCACGAATTTATCTTGTGCTGTTCACTTCTTGAGGAATCTAACTCATGAATCATTAAGTTTATCCGAAGAAGATTTTAATCGATGTATGCGAAAAGGTTTATTATTAATCAGACGTCCTGGTGAACCATTATCAGAAAACGAAAAATTATTAATGGACAATGGAATTCGTCTTGCAGATTTAGAAGATAGCTTANACGATTTGAATACAAAATTAGAATCAGCTGAATCCGATATGAAACGATTTCATGAATATTNTCATCATGAAATANAACANATACGAANCAATATTCCATTGAATGTACGTATAGATGATTTAGATTCACGTCATTTAGAGAATCACATATTTTATTATTANGTCCATTATGTAAAATCAATCGACAAAATGAATCATTATTAGACTGTGAATTGGATGAGACTACAANTCGTCTATTACAGATCCTATACACCNGNCTNCATATGATGCTGNTAATCATTGNAAAAAAAAGTTTGTAAATCATCACANTCATTTACTNATTNCTAAGNTAATTTTTAATAATATCAACTTTTAATCTCCATGGAATGNNATTTNAANTTCGAAAAATCCATTTATTTCTTCCCAANGGNTTTTTGGNTGTTANGGAAACACCCAAAATTAG]




>consensus_1139#0
GTTCACTATCGAAATTATGCTGCTATAACACAACCATATTTATGTAATAATAATGATAAT
AGTGATAATAATAATAAAAGCTCAACATCTGATTACGTGCCTAGTCAAAATGAAAATAAT
AATTCAACTCATGTACAAAATAATGCCATGAATAATTCTGTGAATATAACTAATAATATT
GTATTTGAACAAGAGAATACCGCTAATGCTGACGATTTTTTACCGACACTAATTTGGATT
GTACTAAATTCAAATCCACCATTAATCTATTCTAATTTACAATTTATTATGAGATTTGCT
AATCAGAATAGACTGAATAGTGGTGAAGCTGGTTATTTCTTCACGAATTTATCTTGTGCT
GTTCACTTCTTGAGGAATCTAACTCATGAATCATTAAGTTTATCCGAAGAAGATTTTAAT
CGATGTATGCGAAAAGGTTTATTATTAATCAGACGTCCTGGTGAACCATTATCAGAAAAC
GAAAAATTATTAATGGACAATGGAATTCGTCTTGCAGATTTAGAAGATAGCTTANACGAT
TTGAATACAAAATTAGAATCAGCTGAATCCGATATGAAACGATTTCATGAATATTNTCAT
CATGAAATANAACANATACGAANCAATATTCCATTGAATGTACGTATAGATGATTTAGAT
TCACGTCATTTAGAGAATCACATATTTTATTATTANGTCCATTATGTAAAATCAATCGAC
AAAATGAATCATTATTAGACTGTGAATTGGATGAGACTACAANTCGTCTATTACAGATCC
TATACACCNGNCTNCATATGATGCTGNTAATCATTGNAAAAAAAAGTTTGTAAATCATCA
CANTCATTTACTNATTNCTAAGNTAATTTTTAATAATATCAACTTTTAATCTCCATGGAA
TGNNATTTNAANTTCGAAAAATCCATTTATTTCTTCCCAANGGNTTTTTGGNTGTTANGG
AAACACCCAAAATTAG

consensusID : consensus_1139#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 326
fasta sequence

                              [TAGAAGATAGCTTAACCGATTTGAATACAAAATTAGAATCAGCTGAATCCGATATGAAACGATTTCATGAATATTTTCATCATGAAATAAAACAAATACGACCAAATATTCCATTGAATGTACGTATAGATGATTTAGATTCACGTCATTTAGAGAATCCACATATTTTATTATTAGGTCCATTATGTAAATCAAATCGCCAAAATGAATCATTATTAGACTGTGATTTGGATGAGACTACAAATCGTTTATTACCAGATCCTATACAACCGGCTCCATATGATGCTGTTAATCATTGTAAAAAAAGTTTGTAAAATCATACACAT]

[-] EMBL CD076038             [TAGAAGATAGCTTAACCGATTTGAATACAAAATTAGAATCAGCTGAATCCGATATGAAACGATTTCATGAATATTTTCATCATGAAATAAAACAAATACGACCAAATATTCCATTGAATGTACGTATAGATGATTTAGATTCACGTCATTTAGAGAATCCACATATTTTATTATTAGGTCCATTATGTAAATCAAATCGCCAAAATGAATCATTATTAGACTGTGATTTGGATGAGACTACAAATCGTTTATTACCAGATCCTATACAACCGGCTCCATATGATGCTGTTAATCATTGTAAAAAAAGTTTGTAAAATCATACACAT]




>consensus_1139#1
TAGAAGATAGCTTAACCGATTTGAATACAAAATTAGAATCAGCTGAATCCGATATGAAAC
GATTTCATGAATATTTTCATCATGAAATAAAACAAATACGACCAAATATTCCATTGAATG
TACGTATAGATGATTTAGATTCACGTCATTTAGAGAATCCACATATTTTATTATTAGGTC
CATTATGTAAATCAAATCGCCAAAATGAATCATTATTAGACTGTGATTTGGATGAGACTA
CAAATCGTTTATTACCAGATCCTATACAACCGGCTCCATATGATGCTGTTAATCATTGTA
AAAAAAGTTTGTAAAATCATACACAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1139#0      GTTCACTATCGAAATTATGCTGCTATAACACAACCATATTTATGTAATAATAATGATAAT 60
consensus_1139#1      ------------------------------------------------------------
                                                                                  

consensus_1139#0      AGTGATAATAATAATAAAAGCTCAACATCTGATTACGTGCCTAGTCAAAATGAAAATAAT 120
consensus_1139#1      ------------------------------------------------------------
                                                                                  

consensus_1139#0      AATTCAACTCATGTACAAAATAATGCCATGAATAATTCTGTGAATATAACTAATAATATT 180
consensus_1139#1      ------------------------------------------------------------
                                                                                  

consensus_1139#0      GTATTTGAACAAGAGAATACCGCTAATGCTGACGATTTTTTACCGACACTAATTTGGATT 240
consensus_1139#1      ------------------------------------------------------------
                                                                                  

consensus_1139#0      GTACTAAATTCAAATCCACCATTAATCTATTCTAATTTACAATTTATTATGAGATTTGCT 300
consensus_1139#1      ------------------------------------------------------------
                                                                                  

consensus_1139#0      AATCAGAATAGACTGAATAGTGGTGAAGCTGGTTATTTCTTCACGAATTTATCTTGTGCT 360
consensus_1139#1      ------------------------------------------------------------
                                                                                  

consensus_1139#0      GTTCACTTCTTGAGGAATCTAACTCATGAATCATTAAGTTTATCCGAAGAAGATTTTAAT 420
consensus_1139#1      ------------------------------------------------------------
                                                                                  

consensus_1139#0      CGATGTATGCGAAAAGGTTTATTATTAATCAGACGTCCTGGTGAACCATTATCAGAAAAC 480
consensus_1139#1      ------------------------------------------------------------
                                                                                  

consensus_1139#0      GAAAAATTATTAATGGACAATGGAATTCGTCTTGCAGATTTAGAAGATAGCTTANACGAT 540
consensus_1139#1      ----------------------------------------TAGAAGATAGCTTAACCGAT 20
                                                              **************  ****

consensus_1139#0      TTGAATACAAAATTAGAATCAGCTGAATCCGATATGAAACGATTTCATGAATATTNTCAT 600
consensus_1139#1      TTGAATACAAAATTAGAATCAGCTGAATCCGATATGAAACGATTTCATGAATATTTTCAT 80
                      ******************************************************* ****

consensus_1139#0      CATGAAATANAACANATACGAANCAATATTCCATTGAATGTACGTATAGATGATTTAGAT 660
consensus_1139#1      CATGAAATAAAACAAATACGACCAAATATTCCATTGAATGTACGTATAGATGATTTAGAT 140
                      ********* **** ******   ************************************

consensus_1139#0      TCACGTCATTTAGAGAATC-ACATATTTTATTATTANGTCCATTATGTAAAATCAATCGA 719
consensus_1139#1      TCACGTCATTTAGAGAATCCACATATTTTATTATTAGGTCCATTATGTAAATCAAATCGC 200
                      ******************* **************** **************   ***** 

consensus_1139#0      CAAAATGAATCATTATTAGACTGTGAATTGGATGAGACTACAANTCGTCTATTAC-AGAT 778
consensus_1139#1      CAAAATGAATCATTATTAGACTGTGATTTGGATGAGACTACAAATCGTTTATTACCAGAT 260
                      ************************** **************** **** ****** ****

consensus_1139#0      CCTATACACCNGNCTNCATATGATGCTGNTAATCATTGNAAAAAAAAGTTTGTAAATCAT 838
consensus_1139#1      CCTATACAACCGGCTCCATATGATGCTGTTAATCATTGTAAAAAAA-GTTTGTAAA--AT 317
                      ******** * * ** ************ ********* ******* *********  **

consensus_1139#0      CACANTCATTTACTNATTNCTAAGNTAATTTTTAATAATATCAACTTTTAATCTCCATGG 898
consensus_1139#1      CATACACAT--------------------------------------------------- 326
                      ** *  ***                                                   

consensus_1139#0      AATGNNATTTNAANTTCGAAAAATCCATTTATTTCTTCCCAANGGNTTTTTGGNTGTTAN 958
consensus_1139#1      ------------------------------------------------------------
                                                                                  

consensus_1139#0      GGAAACACCCAAAATTAG 976
consensus_1139#1      ------------------