These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1139#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 976 fasta sequence [GTTCACTATCGAAATTATGCTGCTATAACACAACCATATTTATGTAATAATAATGATAATAGTGATAATAATAATAAAAGCTCAACATCTGATTACGTGCCTAGTCAAAATGAAAATAATAATTCAACTCATGTACAAAATAATGCCATGAATAATTCTGTGAATATAACTAATAATATTGTATTTGAACAAGAGAATACCGCTAATGCTGACGATTTTTTACCGACACTAATTTGGATTGTACTAAATTCAAATCCACCATTAATCTATTCTAATTTACAATTTATTATGAGATTTGCTAATCAGAATAGACTGAATAGTGGTGAAGCTGGTTATTTCTTCACGAATTTATCTTGTGCTGTTCACTTCTTGAGGAATCTAACTCATGAATCATTAAGTTTATCCGAAGAAGATTTTAATCGATGTATGCGAAAAGGTTTATTATTAATCAGACGTCCTGGTGAACCATTATCAGAAAACGAAAAATTATTAATGGACAATGGAATTCGTCTTGCAGATTTAGAAGATAGCTTANACGATTTGAATACAAAATTAGAATCAGCTGAATCCGATATGAAACGATTTCATGAATATTNTCATCATGAAATANAACANATACGAANCAATATTCCATTGAATGTACGTATAGATGATTTAGATTCACGTCATTTAGAGAATCACATATTTTATTATTANGTCCATTATGTAAAATCAATCGACAAAATGAATCATTATTAGACTGTGAATTGGATGAGACTACAANTCGTCTATTACAGATCCTATACACCNGNCTNCATATGATGCTGNTAATCATTGNAAAAAAAAGTTTGTAAATCATCACANTCATTTACTNATTNCTAAGNTAATTTTTAATAATATCAACTTTTAATCTCCATGGAATGNNATTTNAANTTCGAAAAATCCATTTATTTCTTCCCAANGGNTTTTTGGNTGTTANGGAAACACCCAAAATTAG] [+] EMBL CD082439 [GTTCACTATCGAAATTATGCTGCTATAACACAACCATATTTATGTAATAATAATGATAATAGTGATAATAATAATAAAAGCTCAACATCTGATTACGTGCCTAGTCAAAATGAAAATAATAATTCAACTCATGTACAAAATAATGCCATGAATAATTCTGTGAATATAACTAATAATATTGTATTTGAACAAGAGAATACCGCTAATGCTGACGATTTTTTACCGACACTAATTTGGATTGTACTAAATTCAAATCCACCATTAATCTATTCTAATTTACAATTTATTATGAGATTTGCTAATCAGAATAGACTGAATAGTGGTGAAGCTGGTTATTTCTTCACGAATTTATCTTGTGCTGTTCACTTCTTGAGGAATCTAACTCATGAATCATTAAGTTTATCCGAAGAAGATTTTAATCGATGTATGCGAAAAGGTTTATTATTAATCAGACGTCCTGGTGAACCATTATCAGAAAACGAAAAATTATTAATGGACAATGGAATTCGTCTTGCAGATTTAGAAGATAGCTTANACGATTTGAATACAAAATTAGAATCAGCTGAATCCGATATGAAACGATTTCATGAATATTNTCATCATGAAATANAACANATACGAANCAATATTCCATTGAATGTACGTATAGATGATTTAGATTCACGTCATTTAGAGAATCACATATTTTATTATTANGTCCATTATGTAAAATCAATCGACAAAATGAATCATTATTAGACTGTGAATTGGATGAGACTACAANTCGTCTATTACAGATCCTATACACCNGNCTNCATATGATGCTGNTAATCATTGNAAAAAAAAGTTTGTAAATCATCACANTCATTTACTNATTNCTAAGNTAATTTTTAATAATATCAACTTTTAATCTCCATGGAATGNNATTTNAANTTCGAAAAATCCATTTATTTCTTCCCAANGGNTTTTTGGNTGTTANGGAAACACCCAAAATTAG] consensusID : consensus_1139#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 326 fasta sequence [TAGAAGATAGCTTAACCGATTTGAATACAAAATTAGAATCAGCTGAATCCGATATGAAACGATTTCATGAATATTTTCATCATGAAATAAAACAAATACGACCAAATATTCCATTGAATGTACGTATAGATGATTTAGATTCACGTCATTTAGAGAATCCACATATTTTATTATTAGGTCCATTATGTAAATCAAATCGCCAAAATGAATCATTATTAGACTGTGATTTGGATGAGACTACAAATCGTTTATTACCAGATCCTATACAACCGGCTCCATATGATGCTGTTAATCATTGTAAAAAAAGTTTGTAAAATCATACACAT] [-] EMBL CD076038 [TAGAAGATAGCTTAACCGATTTGAATACAAAATTAGAATCAGCTGAATCCGATATGAAACGATTTCATGAATATTTTCATCATGAAATAAAACAAATACGACCAAATATTCCATTGAATGTACGTATAGATGATTTAGATTCACGTCATTTAGAGAATCCACATATTTTATTATTAGGTCCATTATGTAAATCAAATCGCCAAAATGAATCATTATTAGACTGTGATTTGGATGAGACTACAAATCGTTTATTACCAGATCCTATACAACCGGCTCCATATGATGCTGTTAATCATTGTAAAAAAAGTTTGTAAAATCATACACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1139#0 GTTCACTATCGAAATTATGCTGCTATAACACAACCATATTTATGTAATAATAATGATAAT 60 consensus_1139#1 ------------------------------------------------------------ consensus_1139#0 AGTGATAATAATAATAAAAGCTCAACATCTGATTACGTGCCTAGTCAAAATGAAAATAAT 120 consensus_1139#1 ------------------------------------------------------------ consensus_1139#0 AATTCAACTCATGTACAAAATAATGCCATGAATAATTCTGTGAATATAACTAATAATATT 180 consensus_1139#1 ------------------------------------------------------------ consensus_1139#0 GTATTTGAACAAGAGAATACCGCTAATGCTGACGATTTTTTACCGACACTAATTTGGATT 240 consensus_1139#1 ------------------------------------------------------------ consensus_1139#0 GTACTAAATTCAAATCCACCATTAATCTATTCTAATTTACAATTTATTATGAGATTTGCT 300 consensus_1139#1 ------------------------------------------------------------ consensus_1139#0 AATCAGAATAGACTGAATAGTGGTGAAGCTGGTTATTTCTTCACGAATTTATCTTGTGCT 360 consensus_1139#1 ------------------------------------------------------------ consensus_1139#0 GTTCACTTCTTGAGGAATCTAACTCATGAATCATTAAGTTTATCCGAAGAAGATTTTAAT 420 consensus_1139#1 ------------------------------------------------------------ consensus_1139#0 CGATGTATGCGAAAAGGTTTATTATTAATCAGACGTCCTGGTGAACCATTATCAGAAAAC 480 consensus_1139#1 ------------------------------------------------------------ consensus_1139#0 GAAAAATTATTAATGGACAATGGAATTCGTCTTGCAGATTTAGAAGATAGCTTANACGAT 540 consensus_1139#1 ----------------------------------------TAGAAGATAGCTTAACCGAT 20 ************** **** consensus_1139#0 TTGAATACAAAATTAGAATCAGCTGAATCCGATATGAAACGATTTCATGAATATTNTCAT 600 consensus_1139#1 TTGAATACAAAATTAGAATCAGCTGAATCCGATATGAAACGATTTCATGAATATTTTCAT 80 ******************************************************* **** consensus_1139#0 CATGAAATANAACANATACGAANCAATATTCCATTGAATGTACGTATAGATGATTTAGAT 660 consensus_1139#1 CATGAAATAAAACAAATACGACCAAATATTCCATTGAATGTACGTATAGATGATTTAGAT 140 ********* **** ****** ************************************ consensus_1139#0 TCACGTCATTTAGAGAATC-ACATATTTTATTATTANGTCCATTATGTAAAATCAATCGA 719 consensus_1139#1 TCACGTCATTTAGAGAATCCACATATTTTATTATTAGGTCCATTATGTAAATCAAATCGC 200 ******************* **************** ************** ***** consensus_1139#0 CAAAATGAATCATTATTAGACTGTGAATTGGATGAGACTACAANTCGTCTATTAC-AGAT 778 consensus_1139#1 CAAAATGAATCATTATTAGACTGTGATTTGGATGAGACTACAAATCGTTTATTACCAGAT 260 ************************** **************** **** ****** **** consensus_1139#0 CCTATACACCNGNCTNCATATGATGCTGNTAATCATTGNAAAAAAAAGTTTGTAAATCAT 838 consensus_1139#1 CCTATACAACCGGCTCCATATGATGCTGTTAATCATTGTAAAAAAA-GTTTGTAAA--AT 317 ******** * * ** ************ ********* ******* ********* ** consensus_1139#0 CACANTCATTTACTNATTNCTAAGNTAATTTTTAATAATATCAACTTTTAATCTCCATGG 898 consensus_1139#1 CATACACAT--------------------------------------------------- 326 ** * *** consensus_1139#0 AATGNNATTTNAANTTCGAAAAATCCATTTATTTCTTCCCAANGGNTTTTTGGNTGTTAN 958 consensus_1139#1 ------------------------------------------------------------ consensus_1139#0 GGAAACACCCAAAATTAG 976 consensus_1139#1 ------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||