cluster # 1161

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Schistosoma mansoni
cluster # 1161 cluster # 1161 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1161#0 length = 488 sequences # 1

consensus_1161#1 length = 314 sequences # 1

consensusID : consensus_1161#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 488
fasta sequence

                              [CACGAGGCAGTCAAGAAACATCAGGAAACCATTGTAAATGCACTCAAAAGTGAACGGGATGTTTCAGTTCGTCAAAGAGCTGTAGATCTCTTATATGCCATGTGCGACCGAACTAATGCTCAAGCTATCGTAGGGGAGATGCTCAGTTATTTGGAAGTAGCGGATTATGCTATTCGTGAGGAGATGGTTTTAAAGGTTGCTATATTGGCGGAAAAATATGCAACTGACTATTCCTGGTATGTGGATACTATACTGAACTTAATAAGAGTTGCTGGTGACTATGTTAGTGATGAAGTTTGGCACCGTGTCATCCAGATTGTTATAAATCGTGAAGACGTACAAGGATATGCGGCAAAGACAGTATTTGAGGTGAGTNTATATATCTTGTTCTGAATTATTTTTCAGTTATTTATAATACATTNTACCATGATAGTACTTTCCACTACTTTAAATTCATTNTGAATTACAGTAGATTAGAAATACTTTTA]

[+] EMBL CD195032             [CACGAGGCAGTCAAGAAACATCAGGAAACCATTGTAAATGCACTCAAAAGTGAACGGGATGTTTCAGTTCGTCAAAGAGCTGTAGATCTCTTATATGCCATGTGCGACCGAACTAATGCTCAAGCTATCGTAGGGGAGATGCTCAGTTATTTGGAAGTAGCGGATTATGCTATTCGTGAGGAGATGGTTTTAAAGGTTGCTATATTGGCGGAAAAATATGCAACTGACTATTCCTGGTATGTGGATACTATACTGAACTTAATAAGAGTTGCTGGTGACTATGTTAGTGATGAAGTTTGGCACCGTGTCATCCAGATTGTTATAAATCGTGAAGACGTACAAGGATATGCGGCAAAGACAGTATTTGAGGTGAGTNTATATATCTTGTTCTGAATTATTTTTCAGTTATTTATAATACATTNTACCATGATAGTACTTTCCACTACTTTAAATTCATTNTGAATTACAGTAGATTAGAAATACTTTTA]




>consensus_1161#0
CACGAGGCAGTCAAGAAACATCAGGAAACCATTGTAAATGCACTCAAAAGTGAACGGGAT
GTTTCAGTTCGTCAAAGAGCTGTAGATCTCTTATATGCCATGTGCGACCGAACTAATGCT
CAAGCTATCGTAGGGGAGATGCTCAGTTATTTGGAAGTAGCGGATTATGCTATTCGTGAG
GAGATGGTTTTAAAGGTTGCTATATTGGCGGAAAAATATGCAACTGACTATTCCTGGTAT
GTGGATACTATACTGAACTTAATAAGAGTTGCTGGTGACTATGTTAGTGATGAAGTTTGG
CACCGTGTCATCCAGATTGTTATAAATCGTGAAGACGTACAAGGATATGCGGCAAAGACA
GTATTTGAGGTGAGTNTATATATCTTGTTCTGAATTATTTTTCAGTTATTTATAATACAT
TNTACCATGATAGTACTTTCCACTACTTTAAATTCATTNTGAATTACAGTAGATTAGAAA
TACTTTTA

consensusID : consensus_1161#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 314
fasta sequence

                              [ACTATACTGAACTTAATAAGAGTTGCTGGTGACTATGTTAGTGATGAAGTTTGGCACCGTGTCATCCAGATTGTTATAAATCGTGAAGACGTACAAGGATATGCGGCAAAGACAGTATTTGAGGCACTTCAAGCCCCTGCTTGCCATGAAAATATGGTTAAAGTGGGAGGCTATATTTTGGGTGAATTTGGCAATCTGATTGCAGGAGACCCACGATCAGCACCTAAAGTACAATTCAATTTATTGCACAGTAAATTTCATTTATGTACTCCAACTACACGTCAATTGTTGTTGTCCACGTATATGAAGTTTAT]

[+] EMBL CD188542             [ACTATACTGAACTTAATAAGAGTTGCTGGTGACTATGTTAGTGATGAAGTTTGGCACCGTGTCATCCAGATTGTTATAAATCGTGAAGACGTACAAGGATATGCGGCAAAGACAGTATTTGAGGCACTTCAAGCCCCTGCTTGCCATGAAAATATGGTTAAAGTGGGAGGCTATATTTTGGGTGAATTTGGCAATCTGATTGCAGGAGACCCACGATCAGCACCTAAAGTACAATTCAATTTATTGCACAGTAAATTTCATTTATGTACTCCAACTACACGTCAATTGTTGTTGTCCACGTATATGAAGTTTAT]




>consensus_1161#1
ACTATACTGAACTTAATAAGAGTTGCTGGTGACTATGTTAGTGATGAAGTTTGGCACCGT
GTCATCCAGATTGTTATAAATCGTGAAGACGTACAAGGATATGCGGCAAAGACAGTATTT
GAGGCACTTCAAGCCCCTGCTTGCCATGAAAATATGGTTAAAGTGGGAGGCTATATTTTG
GGTGAATTTGGCAATCTGATTGCAGGAGACCCACGATCAGCACCTAAAGTACAATTCAAT
TTATTGCACAGTAAATTTCATTTATGTACTCCAACTACACGTCAATTGTTGTTGTCCACG
TATATGAAGTTTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1161#0      CACGAGGCAGTCAAGAAACATCAGGAAACCATTGTAAATGCACTCAAAAGTGAACGGGAT 60
consensus_1161#1      ------------------------------------------------------------
                                                                                  

consensus_1161#0      GTTTCAGTTCGTCAAAGAGCTGTAGATCTCTTATATGCCATGTGCGACCGAACTAATGCT 120
consensus_1161#1      ------------------------------------------------------------
                                                                                  

consensus_1161#0      CAAGCTATCGTAGGGGAGATGCTCAGTTATTTGGAAGTAGCGGATTATGCTATTCGTGAG 180
consensus_1161#1      ------------------------------------------------------------
                                                                                  

consensus_1161#0      GAGATGGTTTTAAAGGTTGCTATATTGGCGGAAAAATATGCAACTGACTATTCCTGGTAT 240
consensus_1161#1      ------------------------------------------------------------
                                                                                  

consensus_1161#0      GTGGATACTATACTGAACTTAATAAGAGTTGCTGGTGACTATGTTAGTGATGAAGTTTGG 300
consensus_1161#1      ------ACTATACTGAACTTAATAAGAGTTGCTGGTGACTATGTTAGTGATGAAGTTTGG 54
                            ******************************************************

consensus_1161#0      CACCGTGTCATCCAGATTGTTATAAATCGTGAAGACGTACAAGGATATGCGGCAAAGACA 360
consensus_1161#1      CACCGTGTCATCCAGATTGTTATAAATCGTGAAGACGTACAAGGATATGCGGCAAAGACA 114
                      ************************************************************

consensus_1161#0      GTATTTGAGGTGAGTNTATATAT--CTTGTTCTGAAT-TATTTTTCAGTT---------- 407
consensus_1161#1      GTATTTGAGGCACTTCAAGCCCCTGCTTGCCATGAAAATATGGTTAAAGTGGGAGGCTAT 174
                      **********    *  *       ****   ****  ***  ** *  *          

consensus_1161#0      ATTTATAATACATTNTACCAT--GATAGTA-----CTTTC---CACTACTTTAAATTCAT 457
consensus_1161#1      ATTTTGGGTGAATTTGGCAATCTGATTGCAGGAGACCCACGATCAGCACCTAAAGTACAA 234
                      ****    *  ***   * **  *** * *     *   *   **  ** * ** * ** 

consensus_1161#0      TNTGAATTACAGTAGATTAGAAATACTTTTA----------------------------- 488
consensus_1161#1      TTCAATTTATTGCACAGTA-AATTTCATTTATGTACTCCAACTACACGTCAATTGTTGTT 293
                      *   * ***  * * * ** ** * * ****                             

consensus_1161#0      ---------------------
consensus_1161#1      GTCCACGTATATGAAGTTTAT 314