cluster # 1173

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Schistosoma mansoni
cluster # 1173 cluster # 1173 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1173#0 length = 497 sequences # 1

consensus_1173#1 length = 323 sequences # 1

consensusID : consensus_1173#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 497
fasta sequence

                              [AATTCCATAGGACTCCAGCCCCCTGCTCAATTTTAGGAATTTAAATGTATATGTAGTTGGTGAAGTTGGACACCCCAAGGCGAAAGTTATTCGTATTGTGCATATCTCAGATACAAGGGGAGCACATGATGCCTTCACAGTATTTATTCCACGAGGACATATTCTGATTCATTCTGGCGATTTTACATCTCACCCACCTTCACTCAGCCTCCGCTTTTCAACATGGTGTAAGAGTATAACTGGTAAGCTTCCTCGATTTAAGAAGCGTCATTCGTCACCCATTAAAAACTGGCAACAACAAATCAAAGAGATTGATAACTTTTTTGCTCAACAGCCACATGATTTTAAAATCTTTGTTCCCGGTTGCTGGGAAACATGGTATTCAGATTCATCTGGTGACTGTCCCACGCCTGAAAAAATTCAGTCTCAGCTGACATCAGCCATTTATCTTGAAGATTCCTGGTGTCAGGTTTTTGGGTTGACGATTTACGGTATTC]

[+] EMBL CD160519             [AATTCCATAGGACTCCAGCCCCCTGCTCAATTTTAGGAATTTAAATGTATATGTAGTTGGTGAAGTTGGACACCCCAAGGCGAAAGTTATTCGTATTGTGCATATCTCAGATACAAGGGGAGCACATGATGCCTTCACAGTATTTATTCCACGAGGACATATTCTGATTCATTCTGGCGATTTTACATCTCACCCACCTTCACTCAGCCTCCGCTTTTCAACATGGTGTAAGAGTATAACTGGTAAGCTTCCTCGATTTAAGAAGCGTCATTCGTCACCCATTAAAAACTGGCAACAACAAATCAAAGAGATTGATAACTTTTTTGCTCAACAGCCACATGATTTTAAAATCTTTGTTCCCGGTTGCTGGGAAACATGGTATTCAGATTCATCTGGTGACTGTCCCACGCCTGAAAAAATTCAGTCTCAGCTGACATCAGCCATTTATCTTGAAGATTCCTGGTGTCAGGTTTTTGGGTTGACGATTTACGGTATTC]




>consensus_1173#0
AATTCCATAGGACTCCAGCCCCCTGCTCAATTTTAGGAATTTAAATGTATATGTAGTTGG
TGAAGTTGGACACCCCAAGGCGAAAGTTATTCGTATTGTGCATATCTCAGATACAAGGGG
AGCACATGATGCCTTCACAGTATTTATTCCACGAGGACATATTCTGATTCATTCTGGCGA
TTTTACATCTCACCCACCTTCACTCAGCCTCCGCTTTTCAACATGGTGTAAGAGTATAAC
TGGTAAGCTTCCTCGATTTAAGAAGCGTCATTCGTCACCCATTAAAAACTGGCAACAACA
AATCAAAGAGATTGATAACTTTTTTGCTCAACAGCCACATGATTTTAAAATCTTTGTTCC
CGGTTGCTGGGAAACATGGTATTCAGATTCATCTGGTGACTGTCCCACGCCTGAAAAAAT
TCAGTCTCAGCTGACATCAGCCATTTATCTTGAAGATTCCTGGTGTCAGGTTTTTGGGTT
GACGATTTACGGTATTC

consensusID : consensus_1173#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 323
fasta sequence

                              [GTAAAGTTCAGGACGCCATGCAGGCATATGAGTTACAACAACGTCAGTATTATCTGGAATATGCATCCATTGTTTAGAAACATCGTCAATATTGGGCAGCACAAAACCTTTAGAGTGACATGGGCTAGAGACAGTAGTGGTGGGTTTGGATGATGTTTGACCATTAGCTTTTTCAGCGAATCTCAGACAGCTAATTGAAGGCTTAAGTTTAAAATTTGTATAATGATTTAAATGCTTCTGTACGAATGCTCCATCTTCTGGTCTTAAGTCGTCAGCTGAAGTCCAAGGAATACCGTAAATCGTCAACCCAAAAACCTGACACC]

[+] EMBL CD195409             [GTAAAGTTCAGGACGCCATGCAGGCATATGAGTTACAACAACGTCAGTATTATCTGGAATATGCATCCATTGTTTAGAAACATCGTCAATATTGGGCAGCACAAAACCTTTAGAGTGACATGGGCTAGAGACAGTAGTGGTGGGTTTGGATGATGTTTGACCATTAGCTTTTTCAGCGAATCTCAGACAGCTAATTGAAGGCTTAAGTTTAAAATTTGTATAATGATTTAAATGCTTCTGTACGAATGCTCCATCTTCTGGTCTTAAGTCGTCAGCTGAAGTCCAAGGAATACCGTAAATCGTCAACCCAAAAACCTGACACC]




>consensus_1173#1
GTAAAGTTCAGGACGCCATGCAGGCATATGAGTTACAACAACGTCAGTATTATCTGGAAT
ATGCATCCATTGTTTAGAAACATCGTCAATATTGGGCAGCACAAAACCTTTAGAGTGACA
TGGGCTAGAGACAGTAGTGGTGGGTTTGGATGATGTTTGACCATTAGCTTTTTCAGCGAA
TCTCAGACAGCTAATTGAAGGCTTAAGTTTAAAATTTGTATAATGATTTAAATGCTTCTG
TACGAATGCTCCATCTTCTGGTCTTAAGTCGTCAGCTGAAGTCCAAGGAATACCGTAAAT
CGTCAACCCAAAAACCTGACACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1173#0      AATTCCATAGGACTCCAGCCCCCTGCTCAATTTTAGGAATTTAAATGTATATGTAGTTGG 60
consensus_1173#1      ------------------------------------------------------------
                                                                                  

consensus_1173#0      TGAAGTTGGACACCCCAAGGCGAAAGTTATTCGTATTGTGCATATCTCAG-ATACAAGGG 119
consensus_1173#1      ---------------------------------------GTAAAGTTCAGGACGCCATGC 21
                                                             * * *  **** *  * * * 

consensus_1173#0      GAGCACATGATGCCTTCACAGTATTTATTCCACGAGGACATATTCTGATTCATTCTGGCG 179
consensus_1173#1      AGGCATATGA-GTTACAACAACGTCAGTATTATCTGGA-ATATGC--ATCCATTGTTTAG 77
                        *** **** *     ***   *   *   *   *** **** *  ** **** *   *

consensus_1173#0      ATTTTACATCT-CACCCACCTTCACTCAGCCTCCGCTTTTCAACATGGTGTAAGAGTATA 238
consensus_1173#1      AAACATCGTCAATATTGGGCAGCACAAAACCTTTAGAGT--GACATGGGCTAGAGACAGT 135
                      *     * **   *     *  ***  * ***      *   ******  **     *  

consensus_1173#0      ACTGGTAAGCTTCCTCGATTTAAGAAGCGTCATTCGTCACCCATTAAAAACTGGCAACAA 298
consensus_1173#1      AGTGGTGGGTTTGGATGATGTTTGA----CCATTAGCTTTTTCAGCGAATCTCA-GACAG 190
                      * ****  * **    *** *  **     **** *           ** **    *** 

consensus_1173#0      CAAATCAAAGAGATTGATAACTTTTTTGCTCAACAGCCACATGATT-TTAAAATCTTTGT 357
consensus_1173#1      CTAATTGAAGG-----------CTTAAGTTTAAAATTTGTATAATGATTTAAATGCTTCT 239
                      * ***  ***             **  * * ** *     ** **  ** ****  ** *

consensus_1173#0      TCCCGGTTGCTGGGAAACATGGTATTCAGATTCATCTGGTGACTGTCCCACGCCTGAAAA 417
consensus_1173#1      GTACGAATGCTCCATCTTCTGGTCTTAAG--TCGTCAGCTGAA-GTCCAAGGAATACCGT 296
                         **  ****        **** ** **  ** ** * ***  **** * *  *     

consensus_1173#0      AATTCAGTCTCAGCTGACATCAGCCATTTATCTTGAAGATTCCTGGTGTCAGGTTTTTGG 477
consensus_1173#1      AAATC-GTCAACCCAAAAACCTGACACC-------------------------------- 323
                      ** ** ***    *  * * * * **                                  

consensus_1173#0      GTTGACGATTTACGGTATTC 497
consensus_1173#1      --------------------