These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1179#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 568 fasta sequence [AGATGGAAGGAAACAAAATAGACGGACTAACAGTATGGCACACTAGCACCCGTATGGATACGTCATGACTAATAGCCAAGCTCATCAGTTTAAGAGCATCATTCCAACTAGAAACAGAATAAAAACTGCCAATGCATCTCTACAAAAGGCATATCACACTACTGCATATACTTGATACTCGCTCTCAATCTAGAGAAAAATTCGTGGTTTTAATAGTGTGAACTCATCAGCTAAGAAGACTACGGTATCATGGTCATTCTTTGTGTCCTTCCAATCCAGCAGCCTTTAATATTTCCAACCACAATATCCTTCTTTTACTTATCCCCAGAAAAGCAAATGATAACTCCGTGGACATTGATAAAATCTGGTGATTTATTAAGAGCACATAATTTATCTAACGATCGAATAATTATATCAGCCGAGTAGTATTTGCAATCGATTTTGAGCCCAAACTTTGAATCACATACTGTAGACAAGTTATCCAGCAATGTTCTTAAGTCACAACCATTTTCCGAAGCATCAATATATACAACCTCAGGTAAAGCCATCAGACGACCTTGAAAACTTC] [+] EMBL CD178323 [AGATGGAAGGAAACAAAATAGACGGACTAACAGTATGGCACACTAGCACCCGTATGGATACGTCATGACTAATAGCCAAGCTCATCAGTTTAAGAGCATCATTCCAACTAGAAACAGAATAAAAACTGCCAATGCATCTCTACAAAAGGCATATCACACTACTGCATATACTTGATACTCGCTCTCAATCTAGAGAAAAATTCGTGGTTTTAATAGTGTGAACTCATCAGCTAAGAAGACTACGGTATCATGGTCATTCTTTGTGTCCTTCCAATCCAGCAGCCTTTAATATTTCCAACCACAATATCCTTCTTTTACTTATCCCCAGAAAAGCAAATGATAACTCCGTGGACATTGATAAAATCTGGTGATTTATTAAGAGCACATAATTTATCTAACGATCGAATAATTATATCAGCCGAGTAGTATTTGCAATCGATTTTGAGCCCAAACTTTGAATCACATACTGTAGACAAGTTATCCAGCAATGTTCTTAAGTCACAACCATTTTCCGAAGCATCAATATATACAACCTCAGGTAAAGCCATCAGACGACCTTGAAAACTTC] consensusID : consensus_1179#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 288 fasta sequence [AAGCATCTGATTCAGAAGGAAACAAAATAGACGGACTAACAGTATGGCACACTAGCACCCGTATGGATACGTCATGACTAATAGCCAAGCTCATCAGTTTAAGAGCATCATTCCAACTAGAAACCTTATCCCCAGAAAAGCAAATGATAACTCCGTGGACATTGATAAAATCTGGTGATTTATTAAGAGCACATAATTTATCTAACGATCGAATAATTATATCAGCCGAGTAGTATTTGCAATCGATTTTGAGCCCAAACTTTGAATCACATACTGTAGACAAGTTAT] [-] EMBL CD130793 [AAGCATCTGATTCAGAAGGAAACAAAATAGACGGACTAACAGTATGGCACACTAGCACCCGTATGGATACGTCATGACTAATAGCCAAGCTCATCAGTTTAAGAGCATCATTCCAACTAGAAACCTTATCCCCAGAAAAGCAAATGATAACTCCGTGGACATTGATAAAATCTGGTGATTTATTAAGAGCACATAATTTATCTAACGATCGAATAATTATATCAGCCGAGTAGTATTTGCAATCGATTTTGAGCCCAAACTTTGAATCACATACTGTAGACAAGTTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1179#0 AGATGGAAGGAAACAAAATAGACGGACTAACAGTATGGCACACTAGCACCCGTATGGATA 60 consensus_1179#1 ------------------------------------------------------------ consensus_1179#0 CGTCATGACTAATAGCCAAGCTCATCAGTTTAAGAGCATCATTCCAACTAGAAACAGAAT 120 consensus_1179#1 ------------------------------------------------------------ consensus_1179#0 AAAAACTGCCAATGCATCTCTACAAAAGGCATATCACACTACTGCATATACTTGATACTC 180 consensus_1179#1 ----------------------------------------------------AAGCATCT 8 * consensus_1179#0 GCTCTCAATCTAGAGAAAAATTCGTGGTTTTAATAGTGTGAACTCATCAGCTAAGAAGAC 240 consensus_1179#1 GATTCAGAA--GGAAACAAAATAGACGGACTAACAGTATGG-CACACTAGC-ACCCGTAT 64 * * * ** * *** * * * *** *** ** * ** *** * * consensus_1179#0 TACGGTATCATGGTCATTCTTTGTGTCCTTCCAATCCAGCAGCCTTTAATATTTCCAACC 300 consensus_1179#1 GGATACGTCATGACTAATAGCCAAGCTCATC-AGTTTAAGAGC-----ATCATTCCAACT 118 ***** * * * * ** * * * *** ** ******* consensus_1179#0 ACAATATCCTTCTTTTACTTATCCCCAGAAAAGCAAATGATAACTCCGTGGACATTGATA 360 consensus_1179#1 AGAAAC-----------CTTATCCCCAGAAAAGCAAATGATAACTCCGTGGACATTGATA 167 * ** ******************************************* consensus_1179#0 AAATCTGGTGATTTATTAAGAGCACATAATTTATCTAACGATCGAATAATTATATCAGCC 420 consensus_1179#1 AAATCTGGTGATTTATTAAGAGCACATAATTTATCTAACGATCGAATAATTATATCAGCC 227 ************************************************************ consensus_1179#0 GAGTAGTATTTGCAATCGATTTTGAGCCCAAACTTTGAATCACATACTGTAGACAAGTTA 480 consensus_1179#1 GAGTAGTATTTGCAATCGATTTTGAGCCCAAACTTTGAATCACATACTGTAGACAAGTTA 287 ************************************************************ consensus_1179#0 TCCAGCAATGTTCTTAAGTCACAACCATTTTCCGAAGCATCAATATATACAACCTCAGGT 540 consensus_1179#1 T----------------------------------------------------------- 288 * consensus_1179#0 AAAGCCATCAGACGACCTTGAAAACTTC 568 consensus_1179#1 ---------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||