cluster # 1184

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 1184 cluster # 1184 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1184#0 length = 450 sequences # 1

consensus_1184#1 length = 290 sequences # 1

consensusID : consensus_1184#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 450
fasta sequence

                              [CACCCTTACGGTGAAGGTCAAGCTGGGCAGGGCTGTCGTAACAAACAATATATAGGACAATGAGTTAAGATATGATGTCCAACGCATTTGAAGTTGCTGAATTGGCTGAAGATTTTGATGAAGATAAAAGTTTTGAAGCTGTCGAGCCATGTCTTAAGTTCAAATCTATAGAACATGGTTTATGTGATATAACTTCCGTAGATTCCATTACTTGTGTGGCAGTGCATGGGAAATTTATTGGTCAGTCATGAAGCTTAATCCTTTTAAAAGTTCATCGCTGGTATACATTCAGTGTTTTCTAACATCATTTGATGTACTGGCTCTCTACATCTGGTGATTTAGATTTATTGCAGTTGGAACACAATTAGGACGCATTCATTTACTGGATCACAGTGGTTTTCCTGTTGAAAATGGATTTTATGGCGTGCATACCGGACCTGTTAATGCAAT]

[+] EMBL CD124434             [CACCCTTACGGTGAAGGTCAAGCTGGGCAGGGCTGTCGTAACAAACAATATATAGGACAATGAGTTAAGATATGATGTCCAACGCATTTGAAGTTGCTGAATTGGCTGAAGATTTTGATGAAGATAAAAGTTTTGAAGCTGTCGAGCCATGTCTTAAGTTCAAATCTATAGAACATGGTTTATGTGATATAACTTCCGTAGATTCCATTACTTGTGTGGCAGTGCATGGGAAATTTATTGGTCAGTCATGAAGCTTAATCCTTTTAAAAGTTCATCGCTGGTATACATTCAGTGTTTTCTAACATCATTTGATGTACTGGCTCTCTACATCTGGTGATTTAGATTTATTGCAGTTGGAACACAATTAGGACGCATTCATTTACTGGATCACAGTGGTTTTCCTGTTGAAAATGGATTTTATGGCGTGCATACCGGACCTGTTAATGCAAT]




>consensus_1184#0
CACCCTTACGGTGAAGGTCAAGCTGGGCAGGGCTGTCGTAACAAACAATATATAGGACAA
TGAGTTAAGATATGATGTCCAACGCATTTGAAGTTGCTGAATTGGCTGAAGATTTTGATG
AAGATAAAAGTTTTGAAGCTGTCGAGCCATGTCTTAAGTTCAAATCTATAGAACATGGTT
TATGTGATATAACTTCCGTAGATTCCATTACTTGTGTGGCAGTGCATGGGAAATTTATTG
GTCAGTCATGAAGCTTAATCCTTTTAAAAGTTCATCGCTGGTATACATTCAGTGTTTTCT
AACATCATTTGATGTACTGGCTCTCTACATCTGGTGATTTAGATTTATTGCAGTTGGAAC
ACAATTAGGACGCATTCATTTACTGGATCACAGTGGTTTTCCTGTTGAAAATGGATTTTA
TGGCGTGCATACCGGACCTGTTAATGCAAT

consensusID : consensus_1184#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 290
fasta sequence

                              [GTCAACAGCTTCAAAACTTTTATCTTCATCAAAATCTTCAGCCAATTCAGCAACCTCAAATGCGTTGGACATCCATTTTTCCGTTTTCAGGACAATTTAACTATTTTAAGACTTTGATATCACTAAACATGTATCTAAGTCTTTAAAAGAAGAAACAAACTAAACTAACAATTGGAGAAACAGGTAGGGCTATTGTCCGTATTATAAATAAAAGAAATGTTTCGCTGAAAATCTTGATGTGTTTAGTTTTTTTACTATTACATCTCTGTCCTCTATAGTTCTGAAATTGA]

[+] EMBL BG931334             [GTCAACAGCTTCAAAACTTTTATCTTCATCAAAATCTTCAGCCAATTCAGCAACCTCAAATGCGTTGGACATCCATTTTTCCGTTTTCAGGACAATTTAACTATTTTAAGACTTTGATATCACTAAACATGTATCTAAGTCTTTAAAAGAAGAAACAAACTAAACTAACAATTGGAGAAACAGGTAGGGCTATTGTCCGTATTATAAATAAAAGAAATGTTTCGCTGAAAATCTTGATGTGTTTAGTTTTTTTACTATTACATCTCTGTCCTCTATAGTTCTGAAATTGA]




>consensus_1184#1
GTCAACAGCTTCAAAACTTTTATCTTCATCAAAATCTTCAGCCAATTCAGCAACCTCAAA
TGCGTTGGACATCCATTTTTCCGTTTTCAGGACAATTTAACTATTTTAAGACTTTGATAT
CACTAAACATGTATCTAAGTCTTTAAAAGAAGAAACAAACTAAACTAACAATTGGAGAAA
CAGGTAGGGCTATTGTCCGTATTATAAATAAAAGAAATGTTTCGCTGAAAATCTTGATGT
GTTTAGTTTTTTTACTATTACATCTCTGTCCTCTATAGTTCTGAAATTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1184#0      CACCCTTACGGTGAAGGTCAAGCTGGGCAGGGCTGTCGTAACAAACAATATATAGGACAA 60
consensus_1184#1      ------------------------------------------------------------
                                                                                  

consensus_1184#0      TGAGTTAAGATATGATGTCCAACGCATTTGAAGTTGCTGAATTGGCTGAAGATTTTGATG 120
consensus_1184#1      ------------------------------------GTCAACAGCTTCAAAACTTTTATC 24
                                                           * **  *  * ** * *** ** 

consensus_1184#0      AAGATAAAAGTTTTGAAGCTGTCGAGCCATGTCTTAAGT-TCAAATCTATAGAACATGGT 179
consensus_1184#1      TTCATCAAAATCTTCAGCCAATTCAGCAACCTCAAATGCGTTGGACATCCATTTTTCCGT 84
                         ** *** * ** *  *  *  *** *  **  * *  *   *  *  *       **

consensus_1184#0      TTATGTGATATAACTTCCGTAGATTCCATTACTTGTGTGGCAGTGCATGGGAAATTTATT 239
consensus_1184#1      TTTCAGGACA--ATTTAACT--ATTTTAAGACTTTGATATCACTAAACATGTATCTAAGT 140
                      **    ** *  * **   *  ***  *  ****   *  ** *  *   * *  * * *

consensus_1184#0      GGTCAGTCATGAAGCTTAATCCTTTTAAAAGTTCATCGCTGGTATACATTCAGTGTTTTC 299
consensus_1184#1      CTTTAAAAGAAGAAACAAACTAAACTAACAATTG------GAGAAACAGGTAGGGCTAT- 193
                        * *       *    **      *** * **       *  * ***   ** * * * 

consensus_1184#0      TAACATCATTTGATGTACTGGCTCTCTACATCTGGTGATTTAGATTTATTGCAGTTGGAA 359
consensus_1184#1      TGTCCGTATTATAAATAAAAGAAATGTTTCGCTGAAAATCTTGATGTGTT-TAGTTTTTT 252
                      *  *   ***  *  **   *   * *    ***   ** * *** * **  ****    

consensus_1184#0      CACAATTAGGACGCATTCATTTACTGGATCACAGTGGTTTTCCTGTTGAAAATGGATTTT 419
consensus_1184#1      TACTATTACATCTCTGTCCTCTATAGTTCTGAAATTGA---------------------- 290
                       ** ****   * *  ** * **  *      * * *                       

consensus_1184#0      ATGGCGTGCATACCGGACCTGTTAATGCAAT 450
consensus_1184#1      -------------------------------