These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1191#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 651 fasta sequence [AATAACACTATTGTATATGTATAATAATCCTCTTGATTGAATAGACTAATTCTTCTTCTTATTATTATGTCAACAAATTATCAAAAAGATACAACTTTAACAAAATTTTTGTTGGTGGATTACCATATCATACAACTGATGAAAGTTTACGTTGTTTTTTTGATCAATTTGGTCCAATTGATGAAGCTGTTGTAATCACTGATAGACAAACAGGAAAAAGTCGAGGTTATGGATTTGTAACTATGACTCGCACTGAAGATGCCTTACTTGCTATTCGTGATCCTAATCCATGTATTGATGGTCGTAAAGCCAATGTGAACTTAGCAGTACTTGGAGCTAAACCTCGTCTTATGCCTGGAACTAATACTGCTGTACCGGGATTTTTTCCGCTTCAAACTGGGTTACCTATAGATGCTAATCATGCAGGTTTCTATAATAATCCTGCTACTGCTGCAGTTGTTACCAATTCTTTAATGAATCCTTTAATGAATGCAGGTTTATTAACAGGTTTTAATATGCCAAATGCTGCAACATTGTCACCAGGTATGAATGGTATGCTACAAACACCAACTAATCACATATCATCTGTAGCTACTGATCCAACATCTGATAATCGATTACAGGCACAGCTACCATTGAATCCACTTGCTA] [+] EMBL CD059717 [AATAACACTATTGTATATGTATAATAATCCTCTTGATTGAATAGACTAATTCTTCTTCTTATTATTATGTCAACAAATTATCAAAAAGATACAACTTTAACAAAATTTTTGTTGGTGGATTACCATATCATACAACTGATGAAAGTTTACGTTGTTTTTTTGATCAATTTGGTCCAATTGATGAAGCTGTTGTAATCACTGATAGACAAACAGGAAAAAGTCGAGGTTATGGATTTGTAACTATGACTCGCACTGAAGATGCCTTACTTGCTATTCGTGATCCTAATCCATGTATTGATGGTCGTAAAGCCAATGTGAACTTAGCAGTACTTGGAGCTAAACCTCGTCTTATGCCTGGAACTAATACTGCTGTACCGGGATTTTTTCCGCTTCAAACTGGGTTACCTATAGATGCTAATCATGCAGGTTTCTATAATAATCCTGCTACTGCTGCAGTTGTTACCAATTCTTTAATGAATCCTTTAATGAATGCAGGTTTATTAACAGGTTTTAATATGCCAAATGCTGCAACATTGTCACCAGGTATGAATGGTATGCTACAAACACCAACTAATCACATATCATCTGTAGCTACTGATCCAACATCTGATAATCGATTACAGGCACAGCTACCATTGAATCCACTTGCTA] consensusID : consensus_1191#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 301 fasta sequence [GCTGTACCGGGATTTTTTCCGCTTCAAACTGGGATTGGGTACGTGGATGATATTTCTTAAATCTTTCACATTATTGTGAATTCTTTCCTGGTTACCTATAGATGCTAATCATGCAGGTTTCTATAATAATCCTGCTACTGCTGCAGTTGTTACCAATTCTTTAATGAATCCTTTAATGAATGCAGGTTTATTAACAGGTTTTAATATGCCAAATGCTGCAACATTGTCACCAGGTATGAATGGTATGCTACAAACACCAACTAATCACATATCATCTGTAGCTACTGATCCAACATCTGAT] [-] EMBL CD189788 [GCTGTACCGGGATTTTTTCCGCTTCAAACTGGGATTGGGTACGTGGATGATATTTCTTAAATCTTTCACATTATTGTGAATTCTTTCCTGGTTACCTATAGATGCTAATCATGCAGGTTTCTATAATAATCCTGCTACTGCTGCAGTTGTTACCAATTCTTTAATGAATCCTTTAATGAATGCAGGTTTATTAACAGGTTTTAATATGCCAAATGCTGCAACATTGTCACCAGGTATGAATGGTATGCTACAAACACCAACTAATCACATATCATCTGTAGCTACTGATCCAACATCTGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1191#0 AATAACACTATTGTATATGTATAATAATCCTCTTGATTGAATAGACTAATTCTTCTTCTT 60 consensus_1191#1 ------------------------------------------------------------ consensus_1191#0 ATTATTATGTCAACAAATTATCAAAAAGATACAACTTTAACAAAATTTTTGTTGGTGGAT 120 consensus_1191#1 ------------------------------------------------------------ consensus_1191#0 TACCATATCATACAACTGATGAAAGTTTACGTTGTTTTTTTGATCAATTTGGTCCAATTG 180 consensus_1191#1 ------------------------------------------------------------ consensus_1191#0 ATGAAGCTGTTGTAATCACTGATAGACAAACAGGAAAAAGTCGAGGTTATGGATTTGTAA 240 consensus_1191#1 ------------------------------------------------------------ consensus_1191#0 CTATGACTCGCACTGAAGATGCCTTACTTGCTATTCGTGATCCTAATCCATGTATTGATG 300 consensus_1191#1 ------------------------------------------------------------ consensus_1191#0 GTCGTAAAGCCAATGTGAACTTAGCAGTACTTGGAGCTAAACCTCGTCTTATGCCTGGAA 360 consensus_1191#1 --------GCTGTACCGGGATTTTTTCCGCTTCAAACTGGGATTGGGTACGTGGATGATA 52 ** * ** *** * ** * * ** ** * consensus_1191#0 CTAATACTGCTGTACCGGGATTTTTTCCGCTTCAAACTGGGTTACCTATAGATGCTAATC 420 consensus_1191#1 TT--TCTTAAATCTTTCACATTATTGTGAATTCTTTCCTGGTTACCTATAGATGCTAATC 110 * * * *** ** *** * ********************* consensus_1191#0 ATGCAGGTTTCTATAATAATCCTGCTACTGCTGCAGTTGTTACCAATTCTTTAATGAATC 480 consensus_1191#1 ATGCAGGTTTCTATAATAATCCTGCTACTGCTGCAGTTGTTACCAATTCTTTAATGAATC 170 ************************************************************ consensus_1191#0 CTTTAATGAATGCAGGTTTATTAACAGGTTTTAATATGCCAAATGCTGCAACATTGTCAC 540 consensus_1191#1 CTTTAATGAATGCAGGTTTATTAACAGGTTTTAATATGCCAAATGCTGCAACATTGTCAC 230 ************************************************************ consensus_1191#0 CAGGTATGAATGGTATGCTACAAACACCAACTAATCACATATCATCTGTAGCTACTGATC 600 consensus_1191#1 CAGGTATGAATGGTATGCTACAAACACCAACTAATCACATATCATCTGTAGCTACTGATC 290 ************************************************************ consensus_1191#0 CAACATCTGATAATCGATTACAGGCACAGCTACCATTGAATCCACTTGCTA 651 consensus_1191#1 CAACATCTGAT---------------------------------------- 301 *********** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||