These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1204#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 574 fasta sequence [ATTATACGGTTTAATATATAATGTGTCGTGATATTAAAACAGTGAATATCAATAAAATGGGGCCACAATAAACTCCATCACTATTTTCAACATTCACATGTTGACAGGTATACACGAACATGGATACATGCATATTACAAAATAATTTTTTTCTAAAAAAAACTCCGTTGCAAACAATACACGGTACTAAGTAATTGTGACAATAACAATAAAAAATAAAAACAAACTGAATTAGAAAAAAAATATCAAGAAAGGACATGACGAAGAACGATAAAGAAAAGACAAACAGAAAATATGTAAAAAACAACCTGGATGTGAAGTACTGTAGATCGATGTGAACTATGTGTCTATGCATTCTATCAGAGAATGCTGTTGATAAACAAATGAGGATAATTGCACAGCCATAGTGGATCAAAAACAAATCATACTATAGTAGAAACTATTGATGATAACAATGATATTACTAGTTATGATATGAAATAGTAATATCTGTAATAGTATTCAAACTGTATCCAATTTACAAAATATACGTAGAATAAGATACAGACAGATTAAGAATTCTATTTAGAAAAAA] [+] EMBL CD076200 [ATTATACGGTTTAATATATAATGTGTCGTGATATTAAAACAGTGAATATCAATAAAATGGGGCCACAATAAACTCCATCACTATTTTCAACATTCACATGTTGACAGGTATACACGAACATGGATACATGCATATTACAAAATAATTTTTTTCTAAAAAAAACTCCGTTGCAAACAATACACGGTACTAAGTAATTGTGACAATAACAATAAAAAATAAAAACAAACTGAATTAGAAAAAAAATATCAAGAAAGGACATGACGAAGAACGATAAAGAAAAGACAAACAGAAAATATGTAAAAAACAACCTGGATGTGAAGTACTGTAGATCGATGTGAACTATGTGTCTATGCATTCTATCAGAGAATGCTGTTGATAAACAAATGAGGATAATTGCACAGCCATAGTGGATCAAAAACAAATCATACTATAGTAGAAACTATTGATGATAACAATGATATTACTAGTTATGATATGAAATAGTAATATCTGTAATAGTATTCAAACTGTATCCAATTTACAAAATATACGTAGAATAAGATACAGACAGATTAAGAATTCTATTTAGAAAAAA] consensusID : consensus_1204#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 362 fasta sequence [ATAACANTTTTAAAATAAANACAAACTGAATTAGTTTTTTAAATATCAAGAAAGGACATGACGAAGAAACGATAAAGTAAACAACAAACAGTAAATATGTTAAAAACAACCTGGATGTGAAGTACTGTGGATCGATGTGAACTATGTGTCTATGCAGGAAAACAGAGAATGCTGTTGGTGAGGGCAATGAGGATAAAAGCACAGCCATAGTGGATCAAAAACAAAACATACTAAAATAGAAACTATTGATGATCACAATGATATTACTAGTTATTATATTAAATAGTAATATCTGTCATAGTATTCAAACTGTATCCAATTTACAAAATATACGTAGAATAAGATACAGACAGATTAAGAAT] [-] EMBL AA999246 [ATAACANTTTTAAAATAAANACAAACTGAATTAGTTTTTTAAATATCAAGAAAGGACATGACGAAGAAACGATAAAGTAAACAACAAACAGTAAATATGTTAAAAACAACCTGGATGTGAAGTACTGTGGATCGATGTGAACTATGTGTCTATGCAGGAAAACAGAGAATGCTGTTGGTGAGGGCAATGAGGATAAAAGCACAGCCATAGTGGATCAAAAACAAAACATACTAAAATAGAAACTATTGATGATCACAATGATATTACTAGTTATTATATTAAATAGTAATATCTGTCATAGTATTCAAACTGTATCCAATTTACAAAATATACGTAGAATAAGATACAGACAGATTAAGAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1204#0 ATTATACGGTTTAATATATAATGTGTCGTGATATTAAAACAGTGAATATCAATAAAATGG 60 consensus_1204#1 ------------------------------------------------------------ consensus_1204#0 GGCCACAATAAACTCCATCACTATTTTCAACATTCACATGTTGACAGGTATACACGAACA 120 consensus_1204#1 ------------------------------------------------------------ consensus_1204#0 TGGATACATGCATATTACAAAATAATTTTTTTCTAAAAAAAACTCCGTTGCAAACAATAC 180 consensus_1204#1 ------------------------------------------------------------ consensus_1204#0 ACGGTACTAAGTAATTGTGACAATAACAATAA-AAAATAAAAACAAACTGAATTAGAAAA 239 consensus_1204#1 ----------------------ATAACANTTTTAAAATAAANACAAACTGAATTAGTTTT 38 ****** * ******** ************** consensus_1204#0 A-AAATATCAAGAAAGGACATGACGAAGAA-CGATAAAGAAAA-GACAAACAGAAAATAT 296 consensus_1204#1 TTAAATATCAAGAAAGGACATGACGAAGAAACGATAAAGTAAACAACAAACAGTAAATAT 98 **************************** ******** *** ******** ****** consensus_1204#0 GTAAAAAACAACCTGGATGTGAAGTACTGTAGATCGATGTGAACTATGTGTCTATGCATT 356 consensus_1204#1 GTTAAAAACAACCTGGATGTGAAGTACTGTGGATCGATGTGAACTATGTGTCTATGCAGG 158 ** *************************** *************************** consensus_1204#0 CTATCAGAGAATGCTGTTGATAAACA-AATGAGGATAATTGCACAGCCATAGTGGATCAA 415 consensus_1204#1 AAAACAGAGAATGCTGTTGGTGAGGGCAATGAGGATAAAAGCACAGCCATAGTGGATCAA 218 * *************** * * *********** ******************** consensus_1204#0 AAACAAATCATACTATAGTAGAAACTATTGATGATAACAATGATATTACTAGTTATGATA 475 consensus_1204#1 AAACAAAACATACTAAAATAGAAACTATTGATGATCACAATGATATTACTAGTTATTATA 278 ******* ******* * ***************** ******************** *** consensus_1204#0 TGAAATAGTAATATCTGTAATAGTATTCAAACTGTATCCAATTTACAAAATATACGTAGA 535 consensus_1204#1 TTAAATAGTAATATCTGTCATAGTATTCAAACTGTATCCAATTTACAAAATATACGTAGA 338 * **************** ***************************************** consensus_1204#0 ATAAGATACAGACAGATTAAGAATTCTATTTAGAAAAAA 574 consensus_1204#1 ATAAGATACAGACAGATTAAGAAT--------------- 362 ************************ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||