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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 1204 cluster # 1204       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1204#0 length = 574 sequences # 1  
consensus_1204#1 length = 362 sequences # 1  

consensusID : consensus_1204#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 574
fasta sequence
                              [ATTATACGGTTTAATATATAATGTGTCGTGATATTAAAACAGTGAATATCAATAAAATGGGGCCACAATAAACTCCATCACTATTTTCAACATTCACATGTTGACAGGTATACACGAACATGGATACATGCATATTACAAAATAATTTTTTTCTAAAAAAAACTCCGTTGCAAACAATACACGGTACTAAGTAATTGTGACAATAACAATAAAAAATAAAAACAAACTGAATTAGAAAAAAAATATCAAGAAAGGACATGACGAAGAACGATAAAGAAAAGACAAACAGAAAATATGTAAAAAACAACCTGGATGTGAAGTACTGTAGATCGATGTGAACTATGTGTCTATGCATTCTATCAGAGAATGCTGTTGATAAACAAATGAGGATAATTGCACAGCCATAGTGGATCAAAAACAAATCATACTATAGTAGAAACTATTGATGATAACAATGATATTACTAGTTATGATATGAAATAGTAATATCTGTAATAGTATTCAAACTGTATCCAATTTACAAAATATACGTAGAATAAGATACAGACAGATTAAGAATTCTATTTAGAAAAAA]

[+] EMBL CD076200             [ATTATACGGTTTAATATATAATGTGTCGTGATATTAAAACAGTGAATATCAATAAAATGGGGCCACAATAAACTCCATCACTATTTTCAACATTCACATGTTGACAGGTATACACGAACATGGATACATGCATATTACAAAATAATTTTTTTCTAAAAAAAACTCCGTTGCAAACAATACACGGTACTAAGTAATTGTGACAATAACAATAAAAAATAAAAACAAACTGAATTAGAAAAAAAATATCAAGAAAGGACATGACGAAGAACGATAAAGAAAAGACAAACAGAAAATATGTAAAAAACAACCTGGATGTGAAGTACTGTAGATCGATGTGAACTATGTGTCTATGCATTCTATCAGAGAATGCTGTTGATAAACAAATGAGGATAATTGCACAGCCATAGTGGATCAAAAACAAATCATACTATAGTAGAAACTATTGATGATAACAATGATATTACTAGTTATGATATGAAATAGTAATATCTGTAATAGTATTCAAACTGTATCCAATTTACAAAATATACGTAGAATAAGATACAGACAGATTAAGAATTCTATTTAGAAAAAA]


>consensus_1204#0 ATTATACGGTTTAATATATAATGTGTCGTGATATTAAAACAGTGAATATCAATAAAATGG GGCCACAATAAACTCCATCACTATTTTCAACATTCACATGTTGACAGGTATACACGAACA TGGATACATGCATATTACAAAATAATTTTTTTCTAAAAAAAACTCCGTTGCAAACAATAC ACGGTACTAAGTAATTGTGACAATAACAATAAAAAATAAAAACAAACTGAATTAGAAAAA AAATATCAAGAAAGGACATGACGAAGAACGATAAAGAAAAGACAAACAGAAAATATGTAA AAAACAACCTGGATGTGAAGTACTGTAGATCGATGTGAACTATGTGTCTATGCATTCTAT CAGAGAATGCTGTTGATAAACAAATGAGGATAATTGCACAGCCATAGTGGATCAAAAACA AATCATACTATAGTAGAAACTATTGATGATAACAATGATATTACTAGTTATGATATGAAA TAGTAATATCTGTAATAGTATTCAAACTGTATCCAATTTACAAAATATACGTAGAATAAG ATACAGACAGATTAAGAATTCTATTTAGAAAAAA



consensusID : consensus_1204#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 362
fasta sequence
                              [ATAACANTTTTAAAATAAANACAAACTGAATTAGTTTTTTAAATATCAAGAAAGGACATGACGAAGAAACGATAAAGTAAACAACAAACAGTAAATATGTTAAAAACAACCTGGATGTGAAGTACTGTGGATCGATGTGAACTATGTGTCTATGCAGGAAAACAGAGAATGCTGTTGGTGAGGGCAATGAGGATAAAAGCACAGCCATAGTGGATCAAAAACAAAACATACTAAAATAGAAACTATTGATGATCACAATGATATTACTAGTTATTATATTAAATAGTAATATCTGTCATAGTATTCAAACTGTATCCAATTTACAAAATATACGTAGAATAAGATACAGACAGATTAAGAAT]

[-] EMBL AA999246             [ATAACANTTTTAAAATAAANACAAACTGAATTAGTTTTTTAAATATCAAGAAAGGACATGACGAAGAAACGATAAAGTAAACAACAAACAGTAAATATGTTAAAAACAACCTGGATGTGAAGTACTGTGGATCGATGTGAACTATGTGTCTATGCAGGAAAACAGAGAATGCTGTTGGTGAGGGCAATGAGGATAAAAGCACAGCCATAGTGGATCAAAAACAAAACATACTAAAATAGAAACTATTGATGATCACAATGATATTACTAGTTATTATATTAAATAGTAATATCTGTCATAGTATTCAAACTGTATCCAATTTACAAAATATACGTAGAATAAGATACAGACAGATTAAGAAT]


>consensus_1204#1 ATAACANTTTTAAAATAAANACAAACTGAATTAGTTTTTTAAATATCAAGAAAGGACATG ACGAAGAAACGATAAAGTAAACAACAAACAGTAAATATGTTAAAAACAACCTGGATGTGA AGTACTGTGGATCGATGTGAACTATGTGTCTATGCAGGAAAACAGAGAATGCTGTTGGTG AGGGCAATGAGGATAAAAGCACAGCCATAGTGGATCAAAAACAAAACATACTAAAATAGA AACTATTGATGATCACAATGATATTACTAGTTATTATATTAAATAGTAATATCTGTCATA GTATTCAAACTGTATCCAATTTACAAAATATACGTAGAATAAGATACAGACAGATTAAGA AT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1204#0      ATTATACGGTTTAATATATAATGTGTCGTGATATTAAAACAGTGAATATCAATAAAATGG 60
consensus_1204#1      ------------------------------------------------------------
                                                                                  

consensus_1204#0      GGCCACAATAAACTCCATCACTATTTTCAACATTCACATGTTGACAGGTATACACGAACA 120
consensus_1204#1      ------------------------------------------------------------
                                                                                  

consensus_1204#0      TGGATACATGCATATTACAAAATAATTTTTTTCTAAAAAAAACTCCGTTGCAAACAATAC 180
consensus_1204#1      ------------------------------------------------------------
                                                                                  

consensus_1204#0      ACGGTACTAAGTAATTGTGACAATAACAATAA-AAAATAAAAACAAACTGAATTAGAAAA 239
consensus_1204#1      ----------------------ATAACANTTTTAAAATAAANACAAACTGAATTAGTTTT 38
                                            ****** *   ******** **************    

consensus_1204#0      A-AAATATCAAGAAAGGACATGACGAAGAA-CGATAAAGAAAA-GACAAACAGAAAATAT 296
consensus_1204#1      TTAAATATCAAGAAAGGACATGACGAAGAAACGATAAAGTAAACAACAAACAGTAAATAT 98
                        **************************** ******** ***  ******** ******

consensus_1204#0      GTAAAAAACAACCTGGATGTGAAGTACTGTAGATCGATGTGAACTATGTGTCTATGCATT 356
consensus_1204#1      GTTAAAAACAACCTGGATGTGAAGTACTGTGGATCGATGTGAACTATGTGTCTATGCAGG 158
                      ** *************************** ***************************  

consensus_1204#0      CTATCAGAGAATGCTGTTGATAAACA-AATGAGGATAATTGCACAGCCATAGTGGATCAA 415
consensus_1204#1      AAAACAGAGAATGCTGTTGGTGAGGGCAATGAGGATAAAAGCACAGCCATAGTGGATCAA 218
                        * *************** * *    ***********  ********************

consensus_1204#0      AAACAAATCATACTATAGTAGAAACTATTGATGATAACAATGATATTACTAGTTATGATA 475
consensus_1204#1      AAACAAAACATACTAAAATAGAAACTATTGATGATCACAATGATATTACTAGTTATTATA 278
                      ******* ******* * ***************** ******************** ***

consensus_1204#0      TGAAATAGTAATATCTGTAATAGTATTCAAACTGTATCCAATTTACAAAATATACGTAGA 535
consensus_1204#1      TTAAATAGTAATATCTGTCATAGTATTCAAACTGTATCCAATTTACAAAATATACGTAGA 338
                      * **************** *****************************************

consensus_1204#0      ATAAGATACAGACAGATTAAGAATTCTATTTAGAAAAAA 574
consensus_1204#1      ATAAGATACAGACAGATTAAGAAT--------------- 362
                      ************************               




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)