These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1215#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 640 fasta sequence [TGGAAGGGATACTAAAGGGGAAGATATGCATGAATATCAAAATCAAACAGAGACTAATTTAGAACGTGTACAACGAAAAATGGCAATATTATTAAATGATAAAATGGGTAAAATATTAGAAGGAAATCTAATAAAATTAGCTCGTTATGATGTGAATACTTTACTTTCATCAGTACTTTCACTAACTAAACCTACGGATGAAATTGGCAAAGCATATGTCGAGTTTCTTCGCGTCAATTTAGAACAAATGCGTCAAAAAGTCTCTGATGAACTGTATATTTTGTCAATTATGGAAACATGGTATATGACACAAACACGGATGATCAATGATTGGCTTATTGAACGTAAAGGAAATGCTTTAAGTCCTTATCAGTTCACATGTCTTTCTACCATTATTAAAAAAATGTATTCCGATTTTGAACTTCAAGGTATAAGCCCAGATGCATTGGATACAATGGCTTACAAAACAATTATGCAAAGACTTCAAATGGAAGAAACTGCTCAGGCTGTTCGACCTGATTTAGGAAGTAGTCCAACACGATCGATACTTGGCACAATAACAGGCAGTCTAAGTGGTATTCCAAAACCTGGATTCCTTAGTAAAAATGTACATTTATAAGAGACANNNACACANAGCACT] [+] EMBL CD160708 [TGGAAGGGATACTAAAGGGGAAGATATGCATGAATATCAAAATCAAACAGAGACTAATTTAGAACGTGTACAACGAAAAATGGCAATATTATTAAATGATAAAATGGGTAAAATATTAGAAGGAAATCTAATAAAATTAGCTCGTTATGATGTGAATACTTTACTTTCATCAGTACTTTCACTAACTAAACCTACGGATGAAATTGGCAAAGCATATGTCGAGTTTCTTCGCGTCAATTTAGAACAAATGCGTCAAAAAGTCTCTGATGAACTGTATATTTTGTCAATTATGGAAACATGGTATATGACACAAACACGGATGATCAATGATTGGCTTATTGAACGTAAAGGAAATGCTTTAAGTCCTTATCAGTTCACATGTCTTTCTACCATTATTAAAAAAATGTATTCCGATTTTGAACTTCAAGGTATAAGCCCAGATGCATTGGATACAATGGCTTACAAAACAATTATGCAAAGACTTCAAATGGAAGAAACTGCTCAGGCTGTTCGACCTGATTTAGGAAGTAGTCCAACACGATCGATACTTGGCACAATAACAGGCAGTCTAAGTGGTATTCCAAAACCTGGATTCCTTAGTAAAAATGTACATTTATAAGAGACANNNACACANAGCACT] consensusID : consensus_1215#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 460 fasta sequence [AGTGGTATTCCAAAACCTGGATTCCTTAGTAAAATGTAACATTTATAAGAGACAAAACAACAAAGCACTGTCAACTCGTCCTTCAATTCACATACACATATATAGGAGTTGTATGTTAATCTTCATAGACTGCTGTGAATTGTTCTTTTCCTGTCTTTTATTTCCTTATATTTTGGCCAACTATTTATAGCTATTTCCATACAAAATGAGAAAATAAGCTCGACATAGATAATTTTTTTGCCATCCTATACATTGAAAAAAATCTTTGGAAAATATTTTGTCTTAAGGATTTATTAGAAAAACAAAAAATTAAACCCTTCTAGTTCTTTGACTAACAATCAGTGAATTGTCAATGTGTACTTGATTGTTGGCTAATAAAATAAAACAGTAATTTTTGTCAGGAAACAAAAGAGTAGTAGGATTTAATGAATTCAGAAATATCAACAGAACTGTCGAAAGT] [+] EMBL CD201066 [AGTGGTATTCCAAAACCTGGATTCCTTAGTAAAATGTAACATTTATAAGAGACAAAACAACAAAGCACTGTCAACTCGTCCTTCAATTCACATACACATATATAGGAGTTGTATGTTAATCTTCATAGACTGCTGTGAATTGTTCTTTTCCTGTCTTTTATTTCCTTATATTTTGGCCAACTATTTATAGCTATTTCCATACAAAATGAGAAAATAAGCTCGACATAGATAATTTTTTTGCCATCCTATACATTGAAAAAAATCTTTGGAAAATATTTTGTCTTAAGGATTTATTAGAAAAACAAAAAATTAAACCCTTCTAGTTCTTTGACTAACAATCAGTGAATTGTCAATGTGTACTTGATTGTTGGCTAATAAAATAAAACAGTAATTTTTGTCAGGAAACAAAAGAGTAGTAGGATTTAATGAATTCAGAAATATCAACAGAACTGTCGAAAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1215#0 TGGAAGGGATACTAAAGGGGAAGATATGCATGAATATCAAAATCAAACAGAGACTAATTT 60 consensus_1215#1 ------------------------------------------------------------ consensus_1215#0 AGAACGTGTACAACGAAAAATGGCAATATTATTAAATGATAAAATGGGTAAAATATTAGA 120 consensus_1215#1 --AGTG-GTATTCCAAAACCTGGATTCCTTAGTAAAATGTAACATTTATAAGAGAC---A 54 * * *** * *** *** *** **** *** ** *** * * * consensus_1215#0 AGGAAATCTAATAAAATTAGCTCGTTATGATGTGAATACTTTACTTTCATCAGTACTTTC 180 consensus_1215#1 AAACAACAAAGCACTGTCAACTCGTCCTTCAATTCACA-TACACATATATAGGAGTTGT- 112 * ** * * * * ***** * * * * * ** * ** * * * consensus_1215#0 ACTAACTAAACCTACGGATGAAATTGGCAAAGCATATGTCGAGTTTCTTCGCGTCAATTT 240 consensus_1215#1 ---ATGTTAATCTTC--ATAGACT--GCTGTGAAT-TGT----TCTTTTCCTGTCTTTT- 159 * * ** ** * ** * * ** * ** *** * * *** *** ** consensus_1215#0 AGAACAAATGCGTCAAAAAGTCTCTGATGAACTGTATATTTTGTCAATTATGGAAACATG 300 consensus_1215#1 ------ATTTCCTTATA----TTTTGGCCAACTATTTATAGCTATTTCCATACAAAATGA 209 * * * * * * * ** **** * *** ** *** consensus_1215#0 GTATATGACACAAACACGGATGATCAATGATTGGCTTATTGAACGTAAAGGAAATGCTTT 360 consensus_1215#1 GAAAATAAGCTCGACATAGATAATT--TTTTTGCCATCCTATACATTGAAAAAAATCTTT 267 * * ** * *** *** ** * *** * * * ** * * *** **** consensus_1215#0 AAGTCCTTATCAGTTCACATGTCTTTCTACCATTATTAAAAA--AATGTATTCCGATT-- 416 consensus_1215#1 GGAAAATATTTTGTCTTAAGGATTTATTAGAAAAACAAAAAATTAAACCCTTCTAGTTCT 327 * * ** * * ** ** * * ***** ** *** ** consensus_1215#0 TTGAACTTCAAGGTATAA---GCCCAGATGCATTGGATACAATGGCTTACAAAACAATTA 473 consensus_1215#1 TTGACTAACAATCAGTGAATTGTCAATGTGTACTTGAT-TGTTGGCTAATAAAATAAAAC 386 **** *** * * * * * ** * * *** ***** * **** ** consensus_1215#0 TGCAAAGACTTCAAATGGAAGAAACTGCTCAGGCTGTTCGACCTGATTTAGGAAGTAGTC 533 consensus_1215#1 AGTAA--TTTTTGTCAGGAAACAAAAGAGTAGTAGGATTTAATGAATTCAGAAATATCAA 444 * ** ** **** ** * ** * * * *** ** ** consensus_1215#0 CAACACGATCGATACTTGGCACAATAACAGGCAGTCTAAGTGGTATTCCAAAACCTGGAT 593 consensus_1215#1 CAGAACTGTCGAAAGT-------------------------------------------- 460 ** ** **** * * consensus_1215#0 TCCTTAGTAAAAATGTACATTTATAAGAGACANNNACACANAGCACT 640 consensus_1215#1 ----------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||