These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1218#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 374 fasta sequence [GAAGTATCTCTTTAAAATAAACGGAAACTGCAAGTAATAAGCGTAGTGAACGTGTTACGTTCATACGTCCAGCAGTTCCAGATAAGCAACCAGTTTTCTTGATGACAAATAGCTGATTGACTAATTCTGTGCCAAAATTACGATCAAAAAGAACAGGTGAACATCGTTCTAGTAAAATCTTTACAACACGTGCGTAGTTTGTTTGGTTATCATTGGAACTATTGAGATTTTCTGCTGCCGTCCCTATTTTCTTTAATATATCCCTTAATGCTGTTGTTGCCTGAGCACAAGTGGTTTGCGGCTTAGTCAGTTTAACTAAATGATTCCATAGTGTTTTATCTGTATGAACTTGATTGAAGAAACGTTTCAGATGT] [+] EMBL CD130953 [GAAGTATCTCTTTAAAATAAACGGAAACTGCAAGTAATAAGCGTAGTGAACGTGTTACGTTCATACGTCCAGCAGTTCCAGATAAGCAACCAGTTTTCTTGATGACAAATAGCTGATTGACTAATTCTGTGCCAAAATTACGATCAAAAAGAACAGGTGAACATCGTTCTAGTAAAATCTTTACAACACGTGCGTAGTTTGTTTGGTTATCATTGGAACTATTGAGATTTTCTGCTGCCGTCCCTATTTTCTTTAATATATCCCTTAATGCTGTTGTTGCCTGAGCACAAGTGGTTTGCGGCTTAGTCAGTTTAACTAAATGATTCCATAGTGTTTTATCTGTATGAACTTGATTGAAGAAACGTTTCAGATGT] consensusID : consensus_1218#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 328 fasta sequence [GAGTTTTCTTCAGATAAAATACAGAGTAGGTAATCCATGACTTCATTGGAAGGAAGTATCTCTTTAAAATAAACGGAAACTGCAAGTAATAAGCGTAGTGAACGTGTTACGTTCATACGTCCAGCAGTTCCAGATAAGCAACCAGTTTTCTTGATGACAAATAGCTGATTGACTAATTCTGTGCCAAAATTACGATCAAAAAGAACAGGTGAACATCGTTCTAGTAAAATCTTTACAACACGTGCGTAGTTTTTTGTTGGGTCATCAGGGAAAATATAGAGTTTTTGGGCCCGGGCCCATATTTTTTTAAATATATCCTTTAACGCTG] [-] EMBL CD148868 [GAGTTTTCTTCAGATAAAATACAGAGTAGGTAATCCATGACTTCATTGGAAGGAAGTATCTCTTTAAAATAAACGGAAACTGCAAGTAATAAGCGTAGTGAACGTGTTACGTTCATACGTCCAGCAGTTCCAGATAAGCAACCAGTTTTCTTGATGACAAATAGCTGATTGACTAATTCTGTGCCAAAATTACGATCAAAAAGAACAGGTGAACATCGTTCTAGTAAAATCTTTACAACACGTGCGTAGTTTTTTGTTGGGTCATCAGGGAAAATATAGAGTTTTTGGGCCCGGGCCCATATTTTTTTAAATATATCCTTTAACGCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1218#0 ----------------------------------------------------GAAGTATC 8 consensus_1218#1 GAGTTTTCTTCAGATAAAATACAGAGTAGGTAATCCATGACTTCATTGGAAGGAAGTATC 60 ******** consensus_1218#0 TCTTTAAAATAAACGGAAACTGCAAGTAATAAGCGTAGTGAACGTGTTACGTTCATACGT 68 consensus_1218#1 TCTTTAAAATAAACGGAAACTGCAAGTAATAAGCGTAGTGAACGTGTTACGTTCATACGT 120 ************************************************************ consensus_1218#0 CCAGCAGTTCCAGATAAGCAACCAGTTTTCTTGATGACAAATAGCTGATTGACTAATTCT 128 consensus_1218#1 CCAGCAGTTCCAGATAAGCAACCAGTTTTCTTGATGACAAATAGCTGATTGACTAATTCT 180 ************************************************************ consensus_1218#0 GTGCCAAAATTACGATCAAAAAGAACAGGTGAACATCGTTCTAGTAAAATCTTTACAACA 188 consensus_1218#1 GTGCCAAAATTACGATCAAAAAGAACAGGTGAACATCGTTCTAGTAAAATCTTTACAACA 240 ************************************************************ consensus_1218#0 CGTGCGTAGTTT---GTTTGGTTATCATTGGAACTATTGAGATTTTCTGCTGCCGTCCCT 245 consensus_1218#1 CGTGCGTAGTTTTTTGTTGGGTCATCAGGGAAAATATAGAGTTTTTGGGCCCGGGCCCAT 300 ************ *** *** **** * ** *** *** **** ** * ** * consensus_1218#0 ATTTTCTTTAATATATCCCTTAATGCTGTTGTTGCCTGAGCACAAGTGGTTTGCGGCTTA 305 consensus_1218#1 ATTTTTTTAAATATATCCTTTAACGCTG-------------------------------- 328 ***** ** ********* **** **** consensus_1218#0 GTCAGTTTAACTAAATGATTCCATAGTGTTTTATCTGTATGAACTTGATTGAAGAAACGT 365 consensus_1218#1 ------------------------------------------------------------ consensus_1218#0 TTCAGATGT 374 consensus_1218#1 --------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||