cluster # 1246

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Schistosoma mansoni
cluster # 1246 cluster # 1246 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1246#0 length = 479 sequences # 1

consensus_1246#1 length = 392 sequences # 1

consensusID : consensus_1246#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 479
fasta sequence

                              [GTTGATAAATTATCTGGTAAACACATATATGCATAATGTTTTAATGCATCTAACCAAGCATTACTTAAGCTTGGGAGAATCGGTTGAATCCATTTCGATAATAAATGATAGATAGATTTACTTGATGCTGTACAACTACTACTCGATTGAAGGTAAGGAGCAGGTTTACAAACAGATAATATATCTTCTATTGATATTCCTTTAATGATCATACTGTAGTCAGAATCATTGTCGTTTTCACTTTCATCATTCATCATGTCATCTGATTCATCATCCATCAATTGTTCATCATCTAAAGCCCGAGGCGATTCTCCAGTGATTAAGTGTTGTTTTTGGTGTAACTTATTTGCCCATTTCTTAGTTTGCTCAACTGTCAAAATGTAAACTTTAGCCCAAGCAGCTAAAACAGATAGTTTCTCAACTATTGCAGAGTTTTCTGATATCCATTGCGATGATTCTACTCGTTGAGCCTGTGCAGA]

[+] EMBL CD127115             [GTTGATAAATTATCTGGTAAACACATATATGCATAATGTTTTAATGCATCTAACCAAGCATTACTTAAGCTTGGGAGAATCGGTTGAATCCATTTCGATAATAAATGATAGATAGATTTACTTGATGCTGTACAACTACTACTCGATTGAAGGTAAGGAGCAGGTTTACAAACAGATAATATATCTTCTATTGATATTCCTTTAATGATCATACTGTAGTCAGAATCATTGTCGTTTTCACTTTCATCATTCATCATGTCATCTGATTCATCATCCATCAATTGTTCATCATCTAAAGCCCGAGGCGATTCTCCAGTGATTAAGTGTTGTTTTTGGTGTAACTTATTTGCCCATTTCTTAGTTTGCTCAACTGTCAAAATGTAAACTTTAGCCCAAGCAGCTAAAACAGATAGTTTCTCAACTATTGCAGAGTTTTCTGATATCCATTGCGATGATTCTACTCGTTGAGCCTGTGCAGA]




>consensus_1246#0
GTTGATAAATTATCTGGTAAACACATATATGCATAATGTTTTAATGCATCTAACCAAGCA
TTACTTAAGCTTGGGAGAATCGGTTGAATCCATTTCGATAATAAATGATAGATAGATTTA
CTTGATGCTGTACAACTACTACTCGATTGAAGGTAAGGAGCAGGTTTACAAACAGATAAT
ATATCTTCTATTGATATTCCTTTAATGATCATACTGTAGTCAGAATCATTGTCGTTTTCA
CTTTCATCATTCATCATGTCATCTGATTCATCATCCATCAATTGTTCATCATCTAAAGCC
CGAGGCGATTCTCCAGTGATTAAGTGTTGTTTTTGGTGTAACTTATTTGCCCATTTCTTA
GTTTGCTCAACTGTCAAAATGTAAACTTTAGCCCAAGCAGCTAAAACAGATAGTTTCTCA
ACTATTGCAGAGTTTTCTGATATCCATTGCGATGATTCTACTCGTTGAGCCTGTGCAGA

consensusID : consensus_1246#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 392
fasta sequence

                              [TATTTCTTTTGCTAGATTTATTATCCAAAAAATAGTCTATTAACAAAGGTTACCTTAGATAGAAAAACAAATAAATAGATAATTAAATAGTTTAACTAACCAGATAATATATCTTGTATTGATATTCCTTTAATGATCATACTGTAGTCAGAATCATTGTCGTTTTCACTTTCATCATTCATCATGTCATCTGATTCATCATCCATCAATTGTTCATCATCTAAAGCCTGAGGCGATTCTCCAGTGATTAAGTGTTGTTTTTGGTGTAACTTATTTGCCCATTTCTTAGTTTGCTCAACTGTCAAAATGTAAACTTTAGCCCAAGCAGCTAAAACAGATAGTTTCTCAACTATTGCAGAGTTTTCTGATATCCATTGCGATGATTCTACTCG]

[-] EMBL CD117920             [TATTTCTTTTGCTAGATTTATTATCCAAAAAATAGTCTATTAACAAAGGTTACCTTAGATAGAAAAACAAATAAATAGATAATTAAATAGTTTAACTAACCAGATAATATATCTTGTATTGATATTCCTTTAATGATCATACTGTAGTCAGAATCATTGTCGTTTTCACTTTCATCATTCATCATGTCATCTGATTCATCATCCATCAATTGTTCATCATCTAAAGCCTGAGGCGATTCTCCAGTGATTAAGTGTTGTTTTTGGTGTAACTTATTTGCCCATTTCTTAGTTTGCTCAACTGTCAAAATGTAAACTTTAGCCCAAGCAGCTAAAACAGATAGTTTCTCAACTATTGCAGAGTTTTCTGATATCCATTGCGATGATTCTACTCG]




>consensus_1246#1
TATTTCTTTTGCTAGATTTATTATCCAAAAAATAGTCTATTAACAAAGGTTACCTTAGAT
AGAAAAACAAATAAATAGATAATTAAATAGTTTAACTAACCAGATAATATATCTTGTATT
GATATTCCTTTAATGATCATACTGTAGTCAGAATCATTGTCGTTTTCACTTTCATCATTC
ATCATGTCATCTGATTCATCATCCATCAATTGTTCATCATCTAAAGCCTGAGGCGATTCT
CCAGTGATTAAGTGTTGTTTTTGGTGTAACTTATTTGCCCATTTCTTAGTTTGCTCAACT
GTCAAAATGTAAACTTTAGCCCAAGCAGCTAAAACAGATAGTTTCTCAACTATTGCAGAG
TTTTCTGATATCCATTGCGATGATTCTACTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1246#0      GTTGATAAATTATCTGGTAAACACATATATGCATAATGTTTTAATGCATCTAACCAAGCA 60
consensus_1246#1      ----------------------------------------------------------TA 2
                                                                                 *

consensus_1246#0      TTACTTAAGCTTGGGAGAATCGGTTGAATCCATTTCGATAATAAATGATAGATAGAT-TT 119
consensus_1246#1      TTTCTT----TTGCTAGATTTATT---ATCCA----AAAAATAGTCTATTAACAAAGGTT 51
                      ** ***    ***  *** *   *   *****     * ****    **  * * *  **

consensus_1246#0      ACTTGATGCTGTACAACTACTACTCGATTGAAGGTAAGGAGCAGGTTTACAAAC-AGATA 178
consensus_1246#1      ACCTTAGATAGAAAAACAAATA---AATAGATAATTA--AATAGTTTAACTAACCAGATA 106
                      ** * *    * * *** * **    ** **   * *  *  ** ** ** *** *****

consensus_1246#0      ATATATCTTCTATTGATATTCCTTTAATGATCATACTGTAGTCAGAATCATTGTCGTTTT 238
consensus_1246#1      ATATATCTTGTATTGATATTCCTTTAATGATCATACTGTAGTCAGAATCATTGTCGTTTT 166
                      ********* **************************************************

consensus_1246#0      CACTTTCATCATTCATCATGTCATCTGATTCATCATCCATCAATTGTTCATCATCTAAAG 298
consensus_1246#1      CACTTTCATCATTCATCATGTCATCTGATTCATCATCCATCAATTGTTCATCATCTAAAG 226
                      ************************************************************

consensus_1246#0      CCCGAGGCGATTCTCCAGTGATTAAGTGTTGTTTTTGGTGTAACTTATTTGCCCATTTCT 358
consensus_1246#1      CCTGAGGCGATTCTCCAGTGATTAAGTGTTGTTTTTGGTGTAACTTATTTGCCCATTTCT 286
                      ** *********************************************************

consensus_1246#0      TAGTTTGCTCAACTGTCAAAATGTAAACTTTAGCCCAAGCAGCTAAAACAGATAGTTTCT 418
consensus_1246#1      TAGTTTGCTCAACTGTCAAAATGTAAACTTTAGCCCAAGCAGCTAAAACAGATAGTTTCT 346
                      ************************************************************

consensus_1246#0      CAACTATTGCAGAGTTTTCTGATATCCATTGCGATGATTCTACTCGTTGAGCCTGTGCAG 478
consensus_1246#1      CAACTATTGCAGAGTTTTCTGATATCCATTGCGATGATTCTACTCG-------------- 392
                      **********************************************              

consensus_1246#0      A 479
consensus_1246#1      -