cluster # 1248

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Schistosoma mansoni
cluster # 1248 cluster # 1248 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1248#0 length = 587 sequences # 1

consensus_1248#1 length = 542 sequences # 1

consensusID : consensus_1248#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 587
fasta sequence

                              [GACCTCTATCAGTTATCCCTTAGGCACTGTGGTCACGCTCTCAGGTTACTAAGATCACCTGAAATCCAATTTCCTTTTCAGTTACCTCTAGAAGAACCATTTTACGGTGTGAGAAGCCGCCTTACCTCTAACACCATTCAAGATCACTGTATTCATAATCAATCTCAAGTTTTACATTATGTAAATTAGGTTTATGATTTATTGAATGGTGCTGTATAAGAACTCACTTATTAGATTTACAGAAACTTGTTAAGCGTTTTCTTCATTTTAACAATAAAATTCCTTAAATTCAAAGAAGTTGCCTTCTCTTTTCATATTTAGTTTAAACAATATTCATAGTAAATTCAAATTAAGATTCAGTGAATATGAAACATTATATAAACGAGGTATTCAAAACACGGCAACTTACGAAATGTGCCTAAACCTAGTCACAACCTATCTTAAACACTTCATTAGAAGTGCTCAAGAAAAATAAGAATATATTTGTAAAATCTCAGCGAATGAATTGGATGTAAATCCAACATTTCGTCTGGTAATCTGGTCCTTGAAAAAGCTTGGATCAGATTACCAGATTACAAATATATTCT]

[+] EMBL CD160922             [GACCTCTATCAGTTATCCCTTAGGCACTGTGGTCACGCTCTCAGGTTACTAAGATCACCTGAAATCCAATTTCCTTTTCAGTTACCTCTAGAAGAACCATTTTACGGTGTGAGAAGCCGCCTTACCTCTAACACCATTCAAGATCACTGTATTCATAATCAATCTCAAGTTTTACATTATGTAAATTAGGTTTATGATTTATTGAATGGTGCTGTATAAGAACTCACTTATTAGATTTACAGAAACTTGTTAAGCGTTTTCTTCATTTTAACAATAAAATTCCTTAAATTCAAAGAAGTTGCCTTCTCTTTTCATATTTAGTTTAAACAATATTCATAGTAAATTCAAATTAAGATTCAGTGAATATGAAACATTATATAAACGAGGTATTCAAAACACGGCAACTTACGAAATGTGCCTAAACCTAGTCACAACCTATCTTAAACACTTCATTAGAAGTGCTCAAGAAAAATAAGAATATATTTGTAAAATCTCAGCGAATGAATTGGATGTAAATCCAACATTTCGTCTGGTAATCTGGTCCTTGAAAAAGCTTGGATCAGATTACCAGATTACAAATATATTCT]




>consensus_1248#0
GACCTCTATCAGTTATCCCTTAGGCACTGTGGTCACGCTCTCAGGTTACTAAGATCACCT
GAAATCCAATTTCCTTTTCAGTTACCTCTAGAAGAACCATTTTACGGTGTGAGAAGCCGC
CTTACCTCTAACACCATTCAAGATCACTGTATTCATAATCAATCTCAAGTTTTACATTAT
GTAAATTAGGTTTATGATTTATTGAATGGTGCTGTATAAGAACTCACTTATTAGATTTAC
AGAAACTTGTTAAGCGTTTTCTTCATTTTAACAATAAAATTCCTTAAATTCAAAGAAGTT
GCCTTCTCTTTTCATATTTAGTTTAAACAATATTCATAGTAAATTCAAATTAAGATTCAG
TGAATATGAAACATTATATAAACGAGGTATTCAAAACACGGCAACTTACGAAATGTGCCT
AAACCTAGTCACAACCTATCTTAAACACTTCATTAGAAGTGCTCAAGAAAAATAAGAATA
TATTTGTAAAATCTCAGCGAATGAATTGGATGTAAATCCAACATTTCGTCTGGTAATCTG
GTCCTTGAAAAAGCTTGGATCAGATTACCAGATTACAAATATATTCT

consensusID : consensus_1248#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 542
fasta sequence

                              [GTACACTCTATCAGATGTCCATTGTGAACTGGGTGTACACTCTACTCCATGATACGTAAGATACACCTAGCATATCCAATATACCTTTATTAATCCTATCGCTCATATAGAAAACACATTGATAGCGAGTCCACGAAGATATCTGCCTTTGACACTCTAACACGCACTTCACAGATACACCTGATATTGCATAAGCCAATGCTTACAATGTACATTATGCACATGCATTGCTGATGACCTATTGAACGAGGCTGAATAAGAACTCACTCATTAAATCTACAGAAACTTGTTAAGCATCTTCTTCATTTTAACAATAACATTCCTTAAATTCAAAGAAGTTGCCTACTCTTTTAATATTTAGGTCAAACAATATTCATAGTAAATTGCAAATTAAGATTCAATGAATATGAAACATTATATAAACGACGTATTCAAAACACGGCAACTTACAAAATGTGCCTAAACCTACTCACAACCTATCTTAAACACTTCATTAGAAGTGCTCAAGACAAATAACAATATATTTGTTAAATCTCAGCGAA]

[+] EMBL CD161385             [GTACACTCTATCAGATGTCCATTGTGAACTGGGTGTACACTCTACTCCATGATACGTAAGATACACCTAGCATATCCAATATACCTTTATTAATCCTATCGCTCATATAGAAAACACATTGATAGCGAGTCCACGAAGATATCTGCCTTTGACACTCTAACACGCACTTCACAGATACACCTGATATTGCATAAGCCAATGCTTACAATGTACATTATGCACATGCATTGCTGATGACCTATTGAACGAGGCTGAATAAGAACTCACTCATTAAATCTACAGAAACTTGTTAAGCATCTTCTTCATTTTAACAATAACATTCCTTAAATTCAAAGAAGTTGCCTACTCTTTTAATATTTAGGTCAAACAATATTCATAGTAAATTGCAAATTAAGATTCAATGAATATGAAACATTATATAAACGACGTATTCAAAACACGGCAACTTACAAAATGTGCCTAAACCTACTCACAACCTATCTTAAACACTTCATTAGAAGTGCTCAAGACAAATAACAATATATTTGTTAAATCTCAGCGAA]




>consensus_1248#1
GTACACTCTATCAGATGTCCATTGTGAACTGGGTGTACACTCTACTCCATGATACGTAAG
ATACACCTAGCATATCCAATATACCTTTATTAATCCTATCGCTCATATAGAAAACACATT
GATAGCGAGTCCACGAAGATATCTGCCTTTGACACTCTAACACGCACTTCACAGATACAC
CTGATATTGCATAAGCCAATGCTTACAATGTACATTATGCACATGCATTGCTGATGACCT
ATTGAACGAGGCTGAATAAGAACTCACTCATTAAATCTACAGAAACTTGTTAAGCATCTT
CTTCATTTTAACAATAACATTCCTTAAATTCAAAGAAGTTGCCTACTCTTTTAATATTTA
GGTCAAACAATATTCATAGTAAATTGCAAATTAAGATTCAATGAATATGAAACATTATAT
AAACGACGTATTCAAAACACGGCAACTTACAAAATGTGCCTAAACCTACTCACAACCTAT
CTTAAACACTTCATTAGAAGTGCTCAAGACAAATAACAATATATTTGTTAAATCTCAGCG
AA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1248#0      --GACCTCTATCAGTTATCCCTTAGGCACTGTGGTCACGCTCT----CAGGTTAC-TAAG 53
consensus_1248#1      GTACACTCTATCAGATGTCCATTGTGAACTGGGTGTACACTCTACTCCATGATACGTAAG 60
                           ********* * *** **  * **** *   ** ****    ** * *** ****

consensus_1248#0      AT-CACCTG--AAATCCAATTTCCTTTT-------CAGTTACCTCTAGAAGAACCATTTT 103
consensus_1248#1      ATACACCTAGCATATCCAATATACCTTTATTAATCCTATCGCTCATATAGAAAACACATT 120
                      ** *****   * ******* * * ***       *  *  *   ** *  ** **  **

consensus_1248#0      AC-----GGTGTGAGAAG----CCGCCTT--AC-CTCTAACAC-CA-TTCA-AGAT-CAC 147
consensus_1248#1      GATAGCGAGTCCACGAAGATATCTGCCTTTGACACTCTAACACGCACTTCACAGATACAC 180
                              **    ****    * *****  ** ********* ** **** **** ***

consensus_1248#0      T--GTATT-CATAA-TCAAT-CTCAAGTTTTACATTATGTAAATTAG--GTTTATGATTT 200
consensus_1248#1      CTGATATTGCATAAGCCAATGCTTACAATGTACATTATGCACATGCATTGCTGATGACCT 240
                          **** *****  **** ** *   * ********* * **     * * ****  *

consensus_1248#0      ATTGAATGGTGCTGTATAAGAACTCACTTATTAGATTTACAGAAACTTGTTAAGCGTTTT 260
consensus_1248#1      ATTGAACGAGGCTGAATAAGAACTCACTCATTAAATCTACAGAAACTTGTTAAGCATCTT 300
                      ****** *  **** ************* **** ** ****************** * **

consensus_1248#0      CTTCATTTTAACAATAAAATTCCTTAAATTCAAAGAAGTTGCCTTCTCTTTTCATATTTA 320
consensus_1248#1      CTTCATTTTAACAATAACATTCCTTAAATTCAAAGAAGTTGCCTACTCTTTTAATATTTA 360
                      ***************** ************************** ******* *******

consensus_1248#0      GTTTAAACAATATTCATAGTAAATT-CAAATTAAGATTCAGTGAATATGAAACATTATAT 379
consensus_1248#1      GGTCAAACAATATTCATAGTAAATTGCAAATTAAGATTCAATGAATATGAAACATTATAT 420
                      * * ********************* ************** *******************

consensus_1248#0      AAACGAGGTATTCAAAACACGGCAACTTACGAAATGTGCCTAAACCTAGTCACAACCTAT 439
consensus_1248#1      AAACGACGTATTCAAAACACGGCAACTTACAAAATGTGCCTAAACCTACTCACAACCTAT 480
                      ****** *********************** ***************** ***********

consensus_1248#0      CTTAAACACTTCATTAGAAGTGCTCAAGAAAAATAAGAATATATTTGTAAAATCTCAGCG 499
consensus_1248#1      CTTAAACACTTCATTAGAAGTGCTCAAGACAAATAACAATATATTTGTTAAATCTCAGCG 540
                      ***************************** ****** *********** ***********

consensus_1248#0      AATGAATTGGATGTAAATCCAACATTTCGTCTGGTAATCTGGTCCTTGAAAAAGCTTGGA 559
consensus_1248#1      AA---------------------------------------------------------- 542
                      **                                                          

consensus_1248#0      TCAGATTACCAGATTACAAATATATTCT 587
consensus_1248#1      ----------------------------