cluster # 1258

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 1258 cluster # 1258 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1258#0 length = 353 sequences # 1

consensus_1258#1 length = 346 sequences # 1

consensusID : consensus_1258#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 353
fasta sequence

                              [TCAACTGTTAGCTTTCTGAACGTGAATAATGTTATTCAGATAGTAGGATTCAATGAACCCTCAGAAATAGAATCAGAAAAAATATATATCGCCACATTATTTTCATCATGTATTTGTTTGTCACTTAAGAATTGACATTATTTGAAGTGTTAAGAACAAATTGTCGACGAAAAGGTAGTGGAGCTGAAGGTCTGTTTATATTTGTTCGGGATTTAGGAGGTTTCGAAAAATTTGACATATTATAACCACAATCAACTGAGAGTTTCGTAAAGTAACTTGGTTTTCCAATTTGTTCCTGTTCATCATCTGAAGCCGATTCTTTTAGAGGAGCTGAAGATAACAGTAGAGGTTCT]

[+] EMBL CD186810             [TCAACTGTTAGCTTTCTGAACGTGAATAATGTTATTCAGATAGTAGGATTCAATGAACCCTCAGAAATAGAATCAGAAAAAATATATATCGCCACATTATTTTCATCATGTATTTGTTTGTCACTTAAGAATTGACATTATTTGAAGTGTTAAGAACAAATTGTCGACGAAAAGGTAGTGGAGCTGAAGGTCTGTTTATATTTGTTCGGGATTTAGGAGGTTTCGAAAAATTTGACATATTATAACCACAATCAACTGAGAGTTTCGTAAAGTAACTTGGTTTTCCAATTTGTTCCTGTTCATCATCTGAAGCCGATTCTTTTAGAGGAGCTGAAGATAACAGTAGAGGTTCT]




>consensus_1258#0
TCAACTGTTAGCTTTCTGAACGTGAATAATGTTATTCAGATAGTAGGATTCAATGAACCC
TCAGAAATAGAATCAGAAAAAATATATATCGCCACATTATTTTCATCATGTATTTGTTTG
TCACTTAAGAATTGACATTATTTGAAGTGTTAAGAACAAATTGTCGACGAAAAGGTAGTG
GAGCTGAAGGTCTGTTTATATTTGTTCGGGATTTAGGAGGTTTCGAAAAATTTGACATAT
TATAACCACAATCAACTGAGAGTTTCGTAAAGTAACTTGGTTTTCCAATTTGTTCCTGTT
CATCATCTGAAGCCGATTCTTTTAGAGGAGCTGAAGATAACAGTAGAGGTTCT

consensusID : consensus_1258#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 346
fasta sequence

                              [CGAGGAATATGAGATGACTGTGATAGTTCAAGTGAGATAATCAAAAAATTGAATACTTCATGGGCGTCAATGATTTCTTCTTCAACTGTTAGCTTTCTGAACGTGAATAAATGTTATTCAGATAGTAGGATTCAATGAACCCTCAGAAATAGAATCAGAAAAAATATATATCGCCACATTATTTTCATCATGTATTTGTTTGTCACTTAAGAATTGACATTATTTGAAGTGTTAAGAACAAATTGTCGACGAAAAGGTAGTGGAGCTGAAGGTCTGTTTATATTTGTTCGGGATTTAGGAGGTTCCGAAAAATTTGACATATGGGGATCTTTAAGTCGACTGCAGC]

[-] EMBL CD059988             [CGAGGAATATGAGATGACTGTGATAGTTCAAGTGAGATAATCAAAAAATTGAATACTTCATGGGCGTCAATGATTTCTTCTTCAACTGTTAGCTTTCTGAACGTGAATAAATGTTATTCAGATAGTAGGATTCAATGAACCCTCAGAAATAGAATCAGAAAAAATATATATCGCCACATTATTTTCATCATGTATTTGTTTGTCACTTAAGAATTGACATTATTTGAAGTGTTAAGAACAAATTGTCGACGAAAAGGTAGTGGAGCTGAAGGTCTGTTTATATTTGTTCGGGATTTAGGAGGTTCCGAAAAATTTGACATATGGGGATCTTTAAGTCGACTGCAGC]




>consensus_1258#1
CGAGGAATATGAGATGACTGTGATAGTTCAAGTGAGATAATCAAAAAATTGAATACTTCA
TGGGCGTCAATGATTTCTTCTTCAACTGTTAGCTTTCTGAACGTGAATAAATGTTATTCA
GATAGTAGGATTCAATGAACCCTCAGAAATAGAATCAGAAAAAATATATATCGCCACATT
ATTTTCATCATGTATTTGTTTGTCACTTAAGAATTGACATTATTTGAAGTGTTAAGAACA
AATTGTCGACGAAAAGGTAGTGGAGCTGAAGGTCTGTTTATATTTGTTCGGGATTTAGGA
GGTTCCGAAAAATTTGACATATGGGGATCTTTAAGTCGACTGCAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1258#0      ------------------------------------------------------------
consensus_1258#1      CGAGGAATATGAGATGACTGTGATAGTTCAAGTGAGATAATCAAAAAATTGAATACTTCA 60
                                                                                  

consensus_1258#0      ---------------------TCAACTGTTAGCTTTCTGAACGTGAATAA-TGTTATTCA 38
consensus_1258#1      TGGGCGTCAATGATTTCTTCTTCAACTGTTAGCTTTCTGAACGTGAATAAATGTTATTCA 120
                                           ***************************** *********

consensus_1258#0      GATAGTAGGATTCAATGAACCCTCAGAAATAGAATCAGAAAAAATATATATCGCCACATT 98
consensus_1258#1      GATAGTAGGATTCAATGAACCCTCAGAAATAGAATCAGAAAAAATATATATCGCCACATT 180
                      ************************************************************

consensus_1258#0      ATTTTCATCATGTATTTGTTTGTCACTTAAGAATTGACATTATTTGAAGTGTTAAGAACA 158
consensus_1258#1      ATTTTCATCATGTATTTGTTTGTCACTTAAGAATTGACATTATTTGAAGTGTTAAGAACA 240
                      ************************************************************

consensus_1258#0      AATTGTCGACGAAAAGGTAGTGGAGCTGAAGGTCTGTTTATATTTGTTCGGGATTTAGGA 218
consensus_1258#1      AATTGTCGACGAAAAGGTAGTGGAGCTGAAGGTCTGTTTATATTTGTTCGGGATTTAGGA 300
                      ************************************************************

consensus_1258#0      GGTTTCGAAAAATTTGACATATTATAACCAC--AATCAACTGAGAGTTTCGTAAAGTAAC 276
consensus_1258#1      GGTTCCGAAAAATTTGACATATGGGGATCTTTAAGTCGACTGCAGC-------------- 346
                      **** *****************    * *    * ** ****                  

consensus_1258#0      TTGGTTTTCCAATTTGTTCCTGTTCATCATCTGAAGCCGATTCTTTTAGAGGAGCTGAAG 336
consensus_1258#1      ------------------------------------------------------------
                                                                                  

consensus_1258#0      ATAACAGTAGAGGTTCT 353
consensus_1258#1      -----------------