cluster # 127

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Schistosoma mansoni
cluster # 127 cluster # 127 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_127#0 length = 463 sequences # 1

consensus_127#1 length = 199 sequences # 1

consensusID : consensus_127#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 463
fasta sequence

                              [TTTTTTTTTTTTTTNNGNCCTCCCANTGACTCTTTTTTTTTCAAATACATTTACAAGTGAATTAATAAATATATAATTTGTATTTATTAAATGTAATGTATAAATAGGGTTATGTTATTACCATTATTATTATTATTATTACTATAACAGTTCACTTGTATAAACAGTTCATATTACTTTAATATAAACATCATTTTTCATGTTGTTTGCATTTGTATTTTATTCACCTATGTTTACCAATATCACTGTTCGTTTTCTTCATCTTCCCCGTCGTCTTCGCCATGTTGTGGTATACTTTGTGGCTCCTCTGGATGTGGTGTTGGCTGTGGTTTGTACCTATTTCCATATTTTTTACACTTTCCTTTTCCCCCCTTCCTTTCGTTCCTTTCGTCCCTTTGGGTTCCTTTCGTCCCTTTCCTGGGATAATTTTGTTTTGCTTGATACCCCTTTGGTTTGACAGGGT]

[+] EMBL AI395640             [TTTTTTTTTTTTTTNNGNCCTCCCANTGACTCTTTTTTTTTCAAATACATTTACAAGTGAATTAATAAATATATAATTTGTATTTATTAAATGTAATGTATAAATAGGGTTATGTTATTACCATTATTATTATTATTATTACTATAACAGTTCACTTGTATAAACAGTTCATATTACTTTAATATAAACATCATTTTTCATGTTGTTTGCATTTGTATTTTATTCACCTATGTTTACCAATATCACTGTTCGTTTTCTTCATCTTCCCCGTCGTCTTCGCCATGTTGTGGTATACTTTGTGGCTCCTCTGGATGTGGTGTTGGCTGTGGTTTGTACCTATTTCCATATTTTTTACACTTTCCTTTTCCCCCCTTCCTTTCGTTCCTTTCGTCCCTTTGGGTTCCTTTCGTCCCTTTCCTGGGATAATTTTGTTTTGCTTGATACCCCTTTGGTTTGACAGGGT]




>consensus_127#0
TTTTTTTTTTTTTTNNGNCCTCCCANTGACTCTTTTTTTTTCAAATACATTTACAAGTGA
ATTAATAAATATATAATTTGTATTTATTAAATGTAATGTATAAATAGGGTTATGTTATTA
CCATTATTATTATTATTATTACTATAACAGTTCACTTGTATAAACAGTTCATATTACTTT
AATATAAACATCATTTTTCATGTTGTTTGCATTTGTATTTTATTCACCTATGTTTACCAA
TATCACTGTTCGTTTTCTTCATCTTCCCCGTCGTCTTCGCCATGTTGTGGTATACTTTGT
GGCTCCTCTGGATGTGGTGTTGGCTGTGGTTTGTACCTATTTCCATATTTTTTACACTTT
CCTTTTCCCCCCTTCCTTTCGTTCCTTTCGTCCCTTTGGGTTCCTTTCGTCCCTTTCCTG
GGATAATTTTGTTTTGCTTGATACCCCTTTGGTTTGACAGGGT

consensusID : consensus_127#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 199
fasta sequence

                              [TATGCCTATAGTAGTCGAAGTTGTAATGAATAACAAGATGTAAATAGTAGAAATCTTTGATGATGTCAATTTTATTGATCTATGGTTTTACTTGGGTTTGCTTTTAAAGGTAGGCCTTTTGCTCAGCAGTTTATTAGTTTGCTTCTTTTATAGTAGTCTTTGGTATTTATCTTTTCTTTACTTATACTTTTATTATTTC]

[+] EMBL AA917149             [TATGCCTATAGTAGTCGAAGTTGTAATGAATAACAAGATGTAAATAGTAGAAATCTTTGATGATGTCAATTTTATTGATCTATGGTTTTACTTGGGTTTGCTTTTAAAGGTAGGCCTTTTGCTCAGCAGTTTATTAGTTTGCTTCTTTTATAGTAGTCTTTGGTATTTATCTTTTCTTTACTTATACTTTTATTATTTC]




>consensus_127#1
TATGCCTATAGTAGTCGAAGTTGTAATGAATAACAAGATGTAAATAGTAGAAATCTTTGA
TGATGTCAATTTTATTGATCTATGGTTTTACTTGGGTTTGCTTTTAAAGGTAGGCCTTTT
GCTCAGCAGTTTATTAGTTTGCTTCTTTTATAGTAGTCTTTGGTATTTATCTTTTCTTTA
CTTATACTTTTATTATTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_127#0      TTTTTTTTTTTTTTNNGNCCTCCCANTGACTCTTTTTTTTTCAAATACATTTACAAGTGA 60
consensus_127#1      ------------------------------------------------------------
                                                                                 

consensus_127#0      ATTAATAAATATATAATTTGTATTTATTAAATGTAATGTATAAATAGGGTTATGTTATTA 120
consensus_127#1      ------------------------------------------------------------
                                                                                 

consensus_127#0      CCATTATTATTATTATTATTACTATAACAGTTCACTTGTATAAACAGTTCATATTACTTT 180
consensus_127#1      ----------------TATGCCTATAGTAGTCGA--AGTTGTAATGAATAACAAGATGTA 42
                                     ***  *****  ***  *   **   **    * * *  *  * 

consensus_127#0      AATA-TAAACATCATTTTTCATGTTGTTTGCATTTGTATTTTATTC-ACCTATGTTTACC 238
consensus_127#1      AATAGTAGAAATCTTTGATGATGTCAATTTTATTGATCTATGGTTTTACTTGGGTTTGCT 102
                     **** ** * *** **  * ****   **  ***  * * *  **  ** *  **** * 

consensus_127#0      AATATCACTGTTCGTTTTCTTCATCTTCCCCGTCGTCTTCGCCATGTTGTGGTATACTTT 298
consensus_127#1      TTTAAAGGTAGGCCTTTTGCTCAGCAGTTTATTAGTTTGCTTCTT-TTATAGTAGTCTTT 161
                       **    *   * ****  *** *       * ** * *  * * ** * ***  ****

consensus_127#0      GTGGCTCCTCTGGATGTGGTGTTGGCTGTGGTTTGTACCTATTTCCATATTTTTTACACT 358
consensus_127#1      GGTATTTATCT-----TTTCTTTACTTATACTTT-TAT-TATTTC--------------- 199
                     *    *  ***     *    **   * *  *** **  ******               

consensus_127#0      TTCCTTTTCCCCCCTTCCTTTCGTTCCTTTCGTCCCTTTGGGTTCCTTTCGTCCCTTTCC 418
consensus_127#1      ------------------------------------------------------------
                                                                                 

consensus_127#0      TGGGATAATTTTGTTTTGCTTGATACCCCTTTGGTTTGACAGGGT 463
consensus_127#1      ---------------------------------------------