cluster # 130

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Schistosoma mansoni
cluster # 130 cluster # 130 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_130#0 length = 625 sequences # 1

consensus_130#1 length = 83 sequences # 1

consensusID : consensus_130#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 625
fasta sequence

                              [CCTATCGTGATAAACCAATCGAGCTACACCGGCTGGAATAATCATCCCTCAAGGCCGTACCATGCCAGGCAGGTCGGTTGAAAAGTAGTAAGACCAAAAGCAGCGAACCCAGGTCCGAAGACGAAGTCGTACTGCTGACTGTACAGAAGTGTGACGGCAGTAAGGTGTTTCCTTCAGACAACCAGCATGACAGCGATGCTGCCTCCCCACAAGGAGGGGTGGGGTTAGAAAAGGTCGACCCTAATAATGTACACCTCGCTATATCCCACGGATATCCGTCTCCGGCAGTAAGGTCCCAACAAGTACGAAGCTAACATAAAAACTACCCACAAAAAGGTCGTGTGTGACCGACCTCAAGCAGTTGTCCCTTGGGCACTGCGGTCACACTCTCAGGTCACTAAGACCACCTCTAATCCAATTTCCTTTTCAGGTACCTCAAAAAGAACCCTTCCACGGTGTGGGCAACAGGGAAGTGATAACTGCCCTCATACCCCTAACAGCACTCAAGACCACTGTATTCATAATCAATCATACTACTAGAGTATTTGGTGCGCGAATACAGCCTTGNNTTCGTAAAACAGAAGATATTTGTCTTTATGCCTCATTGTTNCAATATTCACCTATT]

[+] EMBL CD183658             [CCTATCGTGATAAACCAATCGAGCTACACCGGCTGGAATAATCATCCCTCAAGGCCGTACCATGCCAGGCAGGTCGGTTGAAAAGTAGTAAGACCAAAAGCAGCGAACCCAGGTCCGAAGACGAAGTCGTACTGCTGACTGTACAGAAGTGTGACGGCAGTAAGGTGTTTCCTTCAGACAACCAGCATGACAGCGATGCTGCCTCCCCACAAGGAGGGGTGGGGTTAGAAAAGGTCGACCCTAATAATGTACACCTCGCTATATCCCACGGATATCCGTCTCCGGCAGTAAGGTCCCAACAAGTACGAAGCTAACATAAAAACTACCCACAAAAAGGTCGTGTGTGACCGACCTCAAGCAGTTGTCCCTTGGGCACTGCGGTCACACTCTCAGGTCACTAAGACCACCTCTAATCCAATTTCCTTTTCAGGTACCTCAAAAAGAACCCTTCCACGGTGTGGGCAACAGGGAAGTGATAACTGCCCTCATACCCCTAACAGCACTCAAGACCACTGTATTCATAATCAATCATACTACTAGAGTATTTGGTGCGCGAATACAGCCTTGNNTTCGTAAAACAGAAGATATTTGTCTTTATGCCTCATTGTTNCAATATTCACCTATT]




>consensus_130#0
CCTATCGTGATAAACCAATCGAGCTACACCGGCTGGAATAATCATCCCTCAAGGCCGTAC
CATGCCAGGCAGGTCGGTTGAAAAGTAGTAAGACCAAAAGCAGCGAACCCAGGTCCGAAG
ACGAAGTCGTACTGCTGACTGTACAGAAGTGTGACGGCAGTAAGGTGTTTCCTTCAGACA
ACCAGCATGACAGCGATGCTGCCTCCCCACAAGGAGGGGTGGGGTTAGAAAAGGTCGACC
CTAATAATGTACACCTCGCTATATCCCACGGATATCCGTCTCCGGCAGTAAGGTCCCAAC
AAGTACGAAGCTAACATAAAAACTACCCACAAAAAGGTCGTGTGTGACCGACCTCAAGCA
GTTGTCCCTTGGGCACTGCGGTCACACTCTCAGGTCACTAAGACCACCTCTAATCCAATT
TCCTTTTCAGGTACCTCAAAAAGAACCCTTCCACGGTGTGGGCAACAGGGAAGTGATAAC
TGCCCTCATACCCCTAACAGCACTCAAGACCACTGTATTCATAATCAATCATACTACTAG
AGTATTTGGTGCGCGAATACAGCCTTGNNTTCGTAAAACAGAAGATATTTGTCTTTATGC
CTCATTGTTNCAATATTCACCTATT

consensusID : consensus_130#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 83
fasta sequence

                              [TGATTATGAATACAGCGGTCTTGAGTGCTGTTAGAGGTATTGGGGCAGTTATCACTTCCCCGGTGCCCACACCGTGGAAGGGT]

[+] EMBL CD111622             [TGATTATGAATACAGCGGTCTTGAGTGCTGTTAGAGGTATTGGGGCAGTTATCACTTCCCCGGTGCCCACACCGTGGAAGGGT]




>consensus_130#1
TGATTATGAATACAGCGGTCTTGAGTGCTGTTAGAGGTATTGGGGCAGTTATCACTTCCC
CGGTGCCCACACCGTGGAAGGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_130#0      CCTATCGTGATAAACCAATCGAGCTACACCGGCTGGAATAATCATCCCTCAAGGCCGTAC 60
consensus_130#1      ------------------------------------------------------------
                                                                                 

consensus_130#0      CATGCCAGGCAGGTCGGTTGAAAAGTAGTAAGACCAAAAGCAGCGAACCCAGGTCCGAAG 120
consensus_130#1      ------------------------------------------------------------
                                                                                 

consensus_130#0      ACGAAGTCGTACTGCTGACTGTACAGAAGTGTGACGGCAGTAAGGTGTTTCCTTCAGACA 180
consensus_130#1      ------------------------------------------------------------
                                                                                 

consensus_130#0      ACCAGCATGACAGCGATGCTGCCTCCCCACAAGGAGGGGTGGGGTTAGAAAAGGTCGACC 240
consensus_130#1      ------------------------------------------------------------
                                                                                 

consensus_130#0      CTAATAATGTACACCTCGCTATATCCCACGGATATCCGTCTCCGGCAGTAAGGTCCCAAC 300
consensus_130#1      ------------------------------------------------------------
                                                                                 

consensus_130#0      AAGTACGAAGCTAACATAAAAACTACCCACAAAAAGGTCGTGTGTGACCGACCTCAAGCA 360
consensus_130#1      ------------------------------------------------------------
                                                                                 

consensus_130#0      GTTGTCCCTTGGGCACTGCGGTCACACTCTCAGGTCACTAAGACCACCTCTAATCCAATT 420
consensus_130#1      ----------------------------------TGATTATGAATACAGCGGTCTTGAGT 26
                                                       * * ** **  **  *       * *

consensus_130#0      TCCTTTTCAGGTACCTCAAAAAGAACC-CTTCCACGGTGTGGGCAACAGGGAAGTGATAA 479
consensus_130#1      GCTGTTAGAGGTATTGGGGCAGTTATCACTTCCCCGGTGCCCACACCGTGGAAGGGT--- 83
                      *  **  *****       *   * * ***** *****    ** *  ***** *    

consensus_130#0      CTGCCCTCATACCCCTAACAGCACTCAAGACCACTGTATTCATAATCAATCATACTACTA 539
consensus_130#1      ------------------------------------------------------------
                                                                                 

consensus_130#0      GAGTATTTGGTGCGCGAATACAGCCTTGNNTTCGTAAAACAGAAGATATTTGTCTTTATG 599
consensus_130#1      ------------------------------------------------------------
                                                                                 

consensus_130#0      CCTCATTGTTNCAATATTCACCTATT 625
consensus_130#1      --------------------------