cluster # 1335

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Schistosoma mansoni
cluster # 1335 cluster # 1335 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1335#0 length = 572 sequences # 1

consensus_1335#1 length = 92 sequences # 1

consensusID : consensus_1335#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 572
fasta sequence

                              [CTAGTTCATCATTTATTCCTACTAGTTCCACACTGTCCTCTTCATTGTATATGGAAAACTTGTCAGTAAAGATTTGGGAATTATATGGTAGAACAAAACAAAGTCCTCTAAAATATAAAAAGAAAATTTGTCTGCTTAATGCTTTGCATATGGTTATATCAGGAGTGTTTGAAAATGCTGGTTTGTATATTGTTGGCTCTTCAATAAATGGTTTCGGTTCAAATCAAAGTGATATGGATATGTGTTTACTTGTAACATCACGCGATTTACATCAGAAAAATGAAGCTACATTTATATTGAGTCGACTTTTACAATCTTTAAGAAAGTGCCGTTTCCTTCATAATTTCACTTTAATTCGTGCTAAAGTTCCAATTATAAAATTTCGTGATAAATATGCTGGGATTGATTGTGATTTAAATGTAAATAATGTAATTGGATTATATAATACACATTTATTAGCTATGTATGCAAAAGGAAGTATTTAATTATACTATACCACCATATGAATTAGATATGAATGGTCAATTACCATGGAATGAATTAAAATCAACTAATTTTAATAATTTAGGTGA]

[+] EMBL BF936052             [CTAGTTCATCATTTATTCCTACTAGTTCCACACTGTCCTCTTCATTGTATATGGAAAACTTGTCAGTAAAGATTTGGGAATTATATGGTAGAACAAAACAAAGTCCTCTAAAATATAAAAAGAAAATTTGTCTGCTTAATGCTTTGCATATGGTTATATCAGGAGTGTTTGAAAATGCTGGTTTGTATATTGTTGGCTCTTCAATAAATGGTTTCGGTTCAAATCAAAGTGATATGGATATGTGTTTACTTGTAACATCACGCGATTTACATCAGAAAAATGAAGCTACATTTATATTGAGTCGACTTTTACAATCTTTAAGAAAGTGCCGTTTCCTTCATAATTTCACTTTAATTCGTGCTAAAGTTCCAATTATAAAATTTCGTGATAAATATGCTGGGATTGATTGTGATTTAAATGTAAATAATGTAATTGGATTATATAATACACATTTATTAGCTATGTATGCAAAAGGAAGTATTTAATTATACTATACCACCATATGAATTAGATATGAATGGTCAATTACCATGGAATGAATTAAAATCAACTAATTTTAATAATTTAGGTGA]




>consensus_1335#0
CTAGTTCATCATTTATTCCTACTAGTTCCACACTGTCCTCTTCATTGTATATGGAAAACT
TGTCAGTAAAGATTTGGGAATTATATGGTAGAACAAAACAAAGTCCTCTAAAATATAAAA
AGAAAATTTGTCTGCTTAATGCTTTGCATATGGTTATATCAGGAGTGTTTGAAAATGCTG
GTTTGTATATTGTTGGCTCTTCAATAAATGGTTTCGGTTCAAATCAAAGTGATATGGATA
TGTGTTTACTTGTAACATCACGCGATTTACATCAGAAAAATGAAGCTACATTTATATTGA
GTCGACTTTTACAATCTTTAAGAAAGTGCCGTTTCCTTCATAATTTCACTTTAATTCGTG
CTAAAGTTCCAATTATAAAATTTCGTGATAAATATGCTGGGATTGATTGTGATTTAAATG
TAAATAATGTAATTGGATTATATAATACACATTTATTAGCTATGTATGCAAAAGGAAGTA
TTTAATTATACTATACCACCATATGAATTAGATATGAATGGTCAATTACCATGGAATGAA
TTAAAATCAACTAATTTTAATAATTTAGGTGA

consensusID : consensus_1335#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 92
fasta sequence

                              [ACTTGTCAGCTAAGATTGGGGAATTACATGGTCCAACATAACTAAGTCCTCTAAAATATAAAAAGAAAATTTGTCTGCTTAATGCTTTGCAT]

[+] EMBL BF936053             [ACTTGTCAGCTAAGATTGGGGAATTACATGGTCCAACATAACTAAGTCCTCTAAAATATAAAAAGAAAATTTGTCTGCTTAATGCTTTGCAT]




>consensus_1335#1
ACTTGTCAGCTAAGATTGGGGAATTACATGGTCCAACATAACTAAGTCCTCTAAAATATA
AAAAGAAAATTTGTCTGCTTAATGCTTTGCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1335#0      CTAGTTCATCATTTATTCCTACTAGTTCCACACTGTCCTCTTCATTGTATATGGAAAACT 60
consensus_1335#1      ---------------------------------------------------------ACT 3
                                                                               ***

consensus_1335#0      TGTCAGTAAAGATTTGGGAATTATATGGTAGAACAAAACAAAGTCCTCTAAAATATAAAA 120
consensus_1335#1      TGTCAGCTAAGATTGGGGAATTACATGGTCCAACATAACTAAGTCCTCTAAAATATAAAA 63
                      ******  ****** ******** *****  **** *** ********************

consensus_1335#0      AGAAAATTTGTCTGCTTAATGCTTTGCATATGGTTATATCAGGAGTGTTTGAAAATGCTG 180
consensus_1335#1      AGAAAATTTGTCTGCTTAATGCTTTGCAT------------------------------- 92
                      *****************************                               

consensus_1335#0      GTTTGTATATTGTTGGCTCTTCAATAAATGGTTTCGGTTCAAATCAAAGTGATATGGATA 240
consensus_1335#1      ------------------------------------------------------------
                                                                                  

consensus_1335#0      TGTGTTTACTTGTAACATCACGCGATTTACATCAGAAAAATGAAGCTACATTTATATTGA 300
consensus_1335#1      ------------------------------------------------------------
                                                                                  

consensus_1335#0      GTCGACTTTTACAATCTTTAAGAAAGTGCCGTTTCCTTCATAATTTCACTTTAATTCGTG 360
consensus_1335#1      ------------------------------------------------------------
                                                                                  

consensus_1335#0      CTAAAGTTCCAATTATAAAATTTCGTGATAAATATGCTGGGATTGATTGTGATTTAAATG 420
consensus_1335#1      ------------------------------------------------------------
                                                                                  

consensus_1335#0      TAAATAATGTAATTGGATTATATAATACACATTTATTAGCTATGTATGCAAAAGGAAGTA 480
consensus_1335#1      ------------------------------------------------------------
                                                                                  

consensus_1335#0      TTTAATTATACTATACCACCATATGAATTAGATATGAATGGTCAATTACCATGGAATGAA 540
consensus_1335#1      ------------------------------------------------------------
                                                                                  

consensus_1335#0      TTAAAATCAACTAATTTTAATAATTTAGGTGA 572
consensus_1335#1      --------------------------------