cluster # 1342

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Schistosoma mansoni
cluster # 1342 cluster # 1342 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1342#0 length = 294 sequences # 1

consensus_1342#1 length = 100 sequences # 1

consensusID : consensus_1342#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 294
fasta sequence

                              [TACGATTACGCACATGGGTGCGACAGTACAATTTGCCATTACCTTATTAACACAACAAAATGAACACCACATTCATAAAAGCCATTATCTCAATGGTACAAACATTTATTAGAAGAATCGAATATCATGAAATTATGATACAATATCAATGTTTTACAATGGAACACCGGGTCCATCACAGATGTGCCCGACTCTTAATCAATCATCCAATCCTTCACGCATGCATGCATGCATGCATGCATGCATTCATTCATTCATTCATTCATTCATTCATGGAATCATTGATTCACCCTC]

[+] EMBL CD161656             [TACGATTACGCACATGGGTGCGACAGTACAATTTGCCATTACCTTATTAACACAACAAAATGAACACCACATTCATAAAAGCCATTATCTCAATGGTACAAACATTTATTAGAAGAATCGAATATCATGAAATTATGATACAATATCAATGTTTTACAATGGAACACCGGGTCCATCACAGATGTGCCCGACTCTTAATCAATCATCCAATCCTTCACGCATGCATGCATGCATGCATGCATGCATTCATTCATTCATTCATTCATTCATTCATGGAATCATTGATTCACCCTC]




>consensus_1342#0
TACGATTACGCACATGGGTGCGACAGTACAATTTGCCATTACCTTATTAACACAACAAAA
TGAACACCACATTCATAAAAGCCATTATCTCAATGGTACAAACATTTATTAGAAGAATCG
AATATCATGAAATTATGATACAATATCAATGTTTTACAATGGAACACCGGGTCCATCACA
GATGTGCCCGACTCTTAATCAATCATCCAATCCTTCACGCATGCATGCATGCATGCATGC
ATGCATTCATTCATTCATTCATTCATTCATTCATGGAATCATTGATTCACCCTC

consensusID : consensus_1342#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 100
fasta sequence

                              [TATGATTATGCACATATATGCGACTGTACAATTTGCCACTACCTCATTAACACAACAAAATGAACACCACATTCATAAAAGTTATTATTTCAATGGTAGA]

[+] EMBL CD161650             [TATGATTATGCACATATATGCGACTGTACAATTTGCCACTACCTCATTAACACAACAAAATGAACACCACATTCATAAAAGTTATTATTTCAATGGTAGA]




>consensus_1342#1
TATGATTATGCACATATATGCGACTGTACAATTTGCCACTACCTCATTAACACAACAAAA
TGAACACCACATTCATAAAAGTTATTATTTCAATGGTAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1342#0      TACGATTACGCACATGGGTGCGACAGTACAATTTGCCATTACCTTATTAACACAACAAAA 60
consensus_1342#1      TATGATTATGCACATATATGCGACTGTACAATTTGCCACTACCTCATTAACACAACAAAA 60
                      ** ***** ******   ****** ************* ***** ***************

consensus_1342#0      TGAACACCACATTCATAAAAGCCATTATCTCAATGGTACAAACATTTATTAGAAGAATCG 120
consensus_1342#1      TGAACACCACATTCATAAAAGTTATTATTTCAATGGTAGA-------------------- 100
                      *********************  ***** ********* *                    

consensus_1342#0      AATATCATGAAATTATGATACAATATCAATGTTTTACAATGGAACACCGGGTCCATCACA 180
consensus_1342#1      ------------------------------------------------------------
                                                                                  

consensus_1342#0      GATGTGCCCGACTCTTAATCAATCATCCAATCCTTCACGCATGCATGCATGCATGCATGC 240
consensus_1342#1      ------------------------------------------------------------
                                                                                  

consensus_1342#0      ATGCATTCATTCATTCATTCATTCATTCATTCATGGAATCATTGATTCACCCTC 294
consensus_1342#1      ------------------------------------------------------