cluster # 1390

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Schistosoma mansoni
cluster # 1390 cluster # 1390 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1390#0 length = 559 sequences # 1

consensus_1390#1 length = 368 sequences # 1

consensusID : consensus_1390#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 559
fasta sequence

                              [GATATTTTCACCCGCGGTAAGTGGCCTCTAGGGGTAATAGAGAGTTGTGAAACAGACAAGGACGGAAAGGTTAGGACGGTGTCAGTACGTACTAATAACGGGTCTATTAGAAGGGATATACGTAAGGTATGTCTCCTAGAAGGGTCCAATTAGTTAATTGTCAAACAATGTAGACAGAACGAGTAGGCGTACTGTTGTAAGTCCTACCCGTTCTTTTAGTGAGGAAAGCGATTAGGTGAACCATGGCAAAAAAGACATCAGAATAGCTTGTGCAGTATGGAGGGATTTTGGGGGCCGGTGTTGGATCCATTTTGCAAGTGAAAATCCCTCCATGCATACACTTGTGATTTCTTCCTTACGTTTTCTTTATTTGTATATGCTGATAACATTTATTATGCTAATTAAGACTGTAACGTTCAATTTTCTTGGTTTTACTATCGTTTTTTATTGAGTCTCCATGTTCTTTACTGAGCTGTATATAGTTTGTTTTAATTGCTATTATTCTGGTATCTGCCATATTGGCTGCTCGCTTTTTGATTGTGCGGTTTGAACTTGACTG]

[+] EMBL BF936991             [GATATTTTCACCCGCGGTAAGTGGCCTCTAGGGGTAATAGAGAGTTGTGAAACAGACAAGGACGGAAAGGTTAGGACGGTGTCAGTACGTACTAATAACGGGTCTATTAGAAGGGATATACGTAAGGTATGTCTCCTAGAAGGGTCCAATTAGTTAATTGTCAAACAATGTAGACAGAACGAGTAGGCGTACTGTTGTAAGTCCTACCCGTTCTTTTAGTGAGGAAAGCGATTAGGTGAACCATGGCAAAAAAGACATCAGAATAGCTTGTGCAGTATGGAGGGATTTTGGGGGCCGGTGTTGGATCCATTTTGCAAGTGAAAATCCCTCCATGCATACACTTGTGATTTCTTCCTTACGTTTTCTTTATTTGTATATGCTGATAACATTTATTATGCTAATTAAGACTGTAACGTTCAATTTTCTTGGTTTTACTATCGTTTTTTATTGAGTCTCCATGTTCTTTACTGAGCTGTATATAGTTTGTTTTAATTGCTATTATTCTGGTATCTGCCATATTGGCTGCTCGCTTTTTGATTGTGCGGTTTGAACTTGACTG]




>consensus_1390#0
GATATTTTCACCCGCGGTAAGTGGCCTCTAGGGGTAATAGAGAGTTGTGAAACAGACAAG
GACGGAAAGGTTAGGACGGTGTCAGTACGTACTAATAACGGGTCTATTAGAAGGGATATA
CGTAAGGTATGTCTCCTAGAAGGGTCCAATTAGTTAATTGTCAAACAATGTAGACAGAAC
GAGTAGGCGTACTGTTGTAAGTCCTACCCGTTCTTTTAGTGAGGAAAGCGATTAGGTGAA
CCATGGCAAAAAAGACATCAGAATAGCTTGTGCAGTATGGAGGGATTTTGGGGGCCGGTG
TTGGATCCATTTTGCAAGTGAAAATCCCTCCATGCATACACTTGTGATTTCTTCCTTACG
TTTTCTTTATTTGTATATGCTGATAACATTTATTATGCTAATTAAGACTGTAACGTTCAA
TTTTCTTGGTTTTACTATCGTTTTTTATTGAGTCTCCATGTTCTTTACTGAGCTGTATAT
AGTTTGTTTTAATTGCTATTATTCTGGTATCTGCCATATTGGCTGCTCGCTTTTTGATTG
TGCGGTTTGAACTTGACTG

consensusID : consensus_1390#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 368
fasta sequence

                              [TTATTGTGATTGATGGGGTGTCTTAGAAGGGATATACGTAAGGTATGTCTCCTAGAAGGGTCCAATTAGTTAATTGTCAAACAATGTAGACAGAACGAGTAGGCGTACTGTTGTAAGTCCTACCCGTTCTTTTAGTGAGGAAAGCGATTAGGTGAACCATGGCAAAAAAGACATCAGAATAGCTTGTGCAGTATGGAGGGATTTTGGGGGCCGGTGTTGGATCCATTTTGCAAGTGAAAATCCCTCCATGCATACACTTGTGATTTCTTCCTTACGTTTTCTTTATTTGTACATGCTGTTAACATTTATTATGCTAATTAAGACTGTAACGCTCAATTTTCTTGGTTTTACTATCGTTTTTTATTGAC]

[-] EMBL BG931737             [TTATTGTGATTGATGGGGTGTCTTAGAAGGGATATACGTAAGGTATGTCTCCTAGAAGGGTCCAATTAGTTAATTGTCAAACAATGTAGACAGAACGAGTAGGCGTACTGTTGTAAGTCCTACCCGTTCTTTTAGTGAGGAAAGCGATTAGGTGAACCATGGCAAAAAAGACATCAGAATAGCTTGTGCAGTATGGAGGGATTTTGGGGGCCGGTGTTGGATCCATTTTGCAAGTGAAAATCCCTCCATGCATACACTTGTGATTTCTTCCTTACGTTTTCTTTATTTGTACATGCTGTTAACATTTATTATGCTAATTAAGACTGTAACGCTCAATTTTCTTGGTTTTACTATCGTTTTTTATTGAC]




>consensus_1390#1
TTATTGTGATTGATGGGGTGTCTTAGAAGGGATATACGTAAGGTATGTCTCCTAGAAGGG
TCCAATTAGTTAATTGTCAAACAATGTAGACAGAACGAGTAGGCGTACTGTTGTAAGTCC
TACCCGTTCTTTTAGTGAGGAAAGCGATTAGGTGAACCATGGCAAAAAAGACATCAGAAT
AGCTTGTGCAGTATGGAGGGATTTTGGGGGCCGGTGTTGGATCCATTTTGCAAGTGAAAA
TCCCTCCATGCATACACTTGTGATTTCTTCCTTACGTTTTCTTTATTTGTACATGCTGTT
AACATTTATTATGCTAATTAAGACTGTAACGCTCAATTTTCTTGGTTTTACTATCGTTTT
TTATTGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1390#0      GATATTTTCACCCGCGGTAAGTGGCCTCTAGGGGTAATAGAGAGTTGTGAAACAGACAAG 60
consensus_1390#1      ------------------------------------------------------------
                                                                                  

consensus_1390#0      GACGGAAAGGTTAGGACGGTGTCAGTACGTACTAATAACGGGTCTATTAGAAGGGATATA 120
consensus_1390#1      ---------------------TTATTGTG-ATTGATG--GGGTGTCTTAGAAGGGATATA 36
                                           * * *  * * * **   **** * **************

consensus_1390#0      CGTAAGGTATGTCTCCTAGAAGGGTCCAATTAGTTAATTGTCAAACAATGTAGACAGAAC 180
consensus_1390#1      CGTAAGGTATGTCTCCTAGAAGGGTCCAATTAGTTAATTGTCAAACAATGTAGACAGAAC 96
                      ************************************************************

consensus_1390#0      GAGTAGGCGTACTGTTGTAAGTCCTACCCGTTCTTTTAGTGAGGAAAGCGATTAGGTGAA 240
consensus_1390#1      GAGTAGGCGTACTGTTGTAAGTCCTACCCGTTCTTTTAGTGAGGAAAGCGATTAGGTGAA 156
                      ************************************************************

consensus_1390#0      CCATGGCAAAAAAGACATCAGAATAGCTTGTGCAGTATGGAGGGATTTTGGGGGCCGGTG 300
consensus_1390#1      CCATGGCAAAAAAGACATCAGAATAGCTTGTGCAGTATGGAGGGATTTTGGGGGCCGGTG 216
                      ************************************************************

consensus_1390#0      TTGGATCCATTTTGCAAGTGAAAATCCCTCCATGCATACACTTGTGATTTCTTCCTTACG 360
consensus_1390#1      TTGGATCCATTTTGCAAGTGAAAATCCCTCCATGCATACACTTGTGATTTCTTCCTTACG 276
                      ************************************************************

consensus_1390#0      TTTTCTTTATTTGTATATGCTGATAACATTTATTATGCTAATTAAGACTGTAACGTTCAA 420
consensus_1390#1      TTTTCTTTATTTGTACATGCTGTTAACATTTATTATGCTAATTAAGACTGTAACGCTCAA 336
                      *************** ****** ******************************** ****

consensus_1390#0      TTTTCTTGGTTTTACTATCGTTTTTTATTGAGTCTCCATGTTCTTTACTGAGCTGTATAT 480
consensus_1390#1      TTTTCTTGGTTTTACTATCGTTTTTTATTGAC---------------------------- 368
                      *******************************                             

consensus_1390#0      AGTTTGTTTTAATTGCTATTATTCTGGTATCTGCCATATTGGCTGCTCGCTTTTTGATTG 540
consensus_1390#1      ------------------------------------------------------------
                                                                                  

consensus_1390#0      TGCGGTTTGAACTTGACTG 559
consensus_1390#1      -------------------