These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence [TTTTATTGAAACGAGGTGATAAATCACGTAAAAAGTTATCATGAAAAACAGTTTTACTTAAAAAATAAAATAATTAAAATGCCAAACAATAAAAGTTTAAATGGATTGTTTTTGATTTTGCAAAAATATAAAATATGAAATCATCGCGTGAAAAACACTTACCTTGATTAATCTAATAAGTAATATTTTGTTAGTCTCTGGATTCTGTTGTTCGGATTGCTACTGTGCGATTATCAAATAGTGAATCAGGTTGTGAGTATGCCTTTGCAATCAAATTAAAATCTATTGTGTTATCTTCCACAGATCCAATGCTCCCATAAAATCGGACTAATGACATTTGGGCACGCGGAATCAAAGCTGTGCTAAAAATCCGTTGATTTCTAACGGTAGGTTCAACACGTTTTGGCCTGTATACCAGTAAATGGACGGGATAACGACATAATGATTGGGCAAGGCAATGGAAAATTATGAGGAATGTGACACAAACTATCAATGGTAAAAAGAAGCCAATATGACTAACTTCCTCCGTTCTGCACCGAAATAAGTTGT] [+] EMBL CD074053 [TTTTATTGAAACGAGGTGATAAATCACGTAAAAAGTTATCATGAAAAACAGTTTTACTTAAAAAATAAAATAATTAAAATGCCAAACAATAAAAGTTTAAATGGATTGTTTTTGATTTTGCAAAAATATAAAATATGAAATCATCGCGTGAAAAACACTTACCTTGATTAATCTAATAAGTAATATTTTGTTAGTCTCTGGATTCTGTTGTTCGGATTGCTACTGTGCGATTATCAAATAGTGAATCAGGTTGTGAGTATGCCTTTGCAATCAAATTAAAATCTATTGTGTTATCTTCCACAGATCCAATGCTCCCATAAAATCGGACTAATGACATTTGGGCACGCGGAATCAAAGCTGTGCTAAAAATCCGTTGATTTCTAACGGTAGGTTCAACACGTTTTGGCCTGTATACCAGTAAATGGACGGGATAACGACATAATGATTGGGCAAGGCAATGGAAAATTATGAGGAATGTGACACAAACTATCAATGGTAAAAAGAAGCCAATATGACTAACTTCCTCCGTTCTGCACCGAAATAAGTTGT] consensusID : consensus_14#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 321 fasta sequence [TGAGAACGAGGTGATAAATCACGTAGNAAAGTTATCATGAAAAGACAGTATTACTTAGNAAAATAGAATAATTAAGATGCCAAACAATAAAAGTTTAAATGGATTGTTTTGGNTTTGGNAAAAATATAAAATATGAAATCATCGCGTGAAAGACACTTAGCTTGGATTAATCTAATAAGTAATATTNGGNTAGTCTCTGGATNCTGCTGTNCGGATTGCTACTGTGCGATTATCAAATAGTGAAATCAGGTTGGTGAGTATGCCTTNGGCAANCAGATTAGANTCTATTGGTGTTATCTCCCACAGGATCCAATGCTCCCA] [+] EMBL SM771 [TGAGAACGAGGTGATAAATCACGTAGNAAAGTTATCATGAAAAGACAGTATTACTTAGNAAAATAGAATAATTAAGATGCCAAACAATAAAAGTTTAAATGGATTGTTTTGGNTTTGGNAAAAATATAAAATATGAAATCATCGCGTGAAAGACACTTAGCTTGGATTAATCTAATAAGTAATATTNGGNTAGTCTCTGGATNCTGCTGTNCGGATTGCTACTGTGCGATTATCAAATAGTGAAATCAGGTTGGTGAGTATGCCTTNGGCAANCAGATTAGANTCTATTGGTGTTATCTCCCACAGGATCCAATGCTCCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14#0 TTTTATTGAAACGAGGTGATAAATCACGTA-AAAAGTTATCATGAAAA-ACAGTTTTACT 58 consensus_14#1 -----TGAGAACGAGGTGATAAATCACGTAGNAAAGTTATCATGAAAAGACAGTATTACT 55 * ********************* **************** ***** ***** consensus_14#0 TA-AAAAATAAAATAATTAAAATGCCAAACAATAAAAGTTTAAATGGATTGTTTTTGATT 117 consensus_14#1 TAGNAAAATAGAATAATTAAGATGCCAAACAATAAAAGTTTAAATGGATTGTTTTGGNTT 115 ** ****** ********* ********************************** * ** consensus_14#0 TTGCAAAAATATAAAATATGAAATCATCGCGTGAAAAACACTTACCTTG-ATTAATCTAA 176 consensus_14#1 TGGNAAAAATATAAAATATGAAATCATCGCGTGAAAGACACTTAGCTTGGATTAATCTAA 175 * * ******************************** ******* **** ********** consensus_14#0 TAAGTAATATTTTGTTAGTCTCTGGATTCTGTTGTTCGGATTGCTACTGTGCGATTATCA 236 consensus_14#1 TAAGTAATATTNGGNTAGTCTCTGGATNCTGCTGTNCGGATTGCTACTGTGCGATTATCA 235 *********** * ************ *** *** ************************ consensus_14#0 AATAGTGAA-TCAGGTTG-TGAGTATGCCTTTG-CAATCAAATTAAAATCTATTG-TGTT 292 consensus_14#1 AATAGTGAAATCAGGTTGGTGAGTATGCCTTNGGCAANCAGATTAGANTCTATTGGTGTT 295 ********* ******** ************ * *** ** **** * ******* **** consensus_14#0 ATCTTCCACAG-ATCCAATGCTCCCATAAAATCGGACTAATGACATTTGGGCACGCGGAA 351 consensus_14#1 ATCTCCCACAGGATCCAATGCTCCCA---------------------------------- 321 **** ****** ************** consensus_14#0 TCAAAGCTGTGCTAAAAATCCGTTGATTTCTAACGGTAGGTTCAACACGTTTTGGCCTGT 411 consensus_14#1 ------------------------------------------------------------ consensus_14#0 ATACCAGTAAATGGACGGGATAACGACATAATGATTGGGCAAGGCAATGGAAAATTATGA 471 consensus_14#1 ------------------------------------------------------------ consensus_14#0 GGAATGTGACACAAACTATCAATGGTAAAAAGAAGCCAATATGACTAACTTCCTCCGTTC 531 consensus_14#1 ------------------------------------------------------------ consensus_14#0 TGCACCGAAATAAGTTGT 549 consensus_14#1 ------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||