cluster # 14

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Schistosoma mansoni
cluster # 14 cluster # 14 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_14#0 length = 549 sequences # 1

consensus_14#1 length = 321 sequences # 1

consensusID : consensus_14#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 549
fasta sequence

                              [TTTTATTGAAACGAGGTGATAAATCACGTAAAAAGTTATCATGAAAAACAGTTTTACTTAAAAAATAAAATAATTAAAATGCCAAACAATAAAAGTTTAAATGGATTGTTTTTGATTTTGCAAAAATATAAAATATGAAATCATCGCGTGAAAAACACTTACCTTGATTAATCTAATAAGTAATATTTTGTTAGTCTCTGGATTCTGTTGTTCGGATTGCTACTGTGCGATTATCAAATAGTGAATCAGGTTGTGAGTATGCCTTTGCAATCAAATTAAAATCTATTGTGTTATCTTCCACAGATCCAATGCTCCCATAAAATCGGACTAATGACATTTGGGCACGCGGAATCAAAGCTGTGCTAAAAATCCGTTGATTTCTAACGGTAGGTTCAACACGTTTTGGCCTGTATACCAGTAAATGGACGGGATAACGACATAATGATTGGGCAAGGCAATGGAAAATTATGAGGAATGTGACACAAACTATCAATGGTAAAAAGAAGCCAATATGACTAACTTCCTCCGTTCTGCACCGAAATAAGTTGT]

[+] EMBL CD074053             [TTTTATTGAAACGAGGTGATAAATCACGTAAAAAGTTATCATGAAAAACAGTTTTACTTAAAAAATAAAATAATTAAAATGCCAAACAATAAAAGTTTAAATGGATTGTTTTTGATTTTGCAAAAATATAAAATATGAAATCATCGCGTGAAAAACACTTACCTTGATTAATCTAATAAGTAATATTTTGTTAGTCTCTGGATTCTGTTGTTCGGATTGCTACTGTGCGATTATCAAATAGTGAATCAGGTTGTGAGTATGCCTTTGCAATCAAATTAAAATCTATTGTGTTATCTTCCACAGATCCAATGCTCCCATAAAATCGGACTAATGACATTTGGGCACGCGGAATCAAAGCTGTGCTAAAAATCCGTTGATTTCTAACGGTAGGTTCAACACGTTTTGGCCTGTATACCAGTAAATGGACGGGATAACGACATAATGATTGGGCAAGGCAATGGAAAATTATGAGGAATGTGACACAAACTATCAATGGTAAAAAGAAGCCAATATGACTAACTTCCTCCGTTCTGCACCGAAATAAGTTGT]




>consensus_14#0
TTTTATTGAAACGAGGTGATAAATCACGTAAAAAGTTATCATGAAAAACAGTTTTACTTA
AAAAATAAAATAATTAAAATGCCAAACAATAAAAGTTTAAATGGATTGTTTTTGATTTTG
CAAAAATATAAAATATGAAATCATCGCGTGAAAAACACTTACCTTGATTAATCTAATAAG
TAATATTTTGTTAGTCTCTGGATTCTGTTGTTCGGATTGCTACTGTGCGATTATCAAATA
GTGAATCAGGTTGTGAGTATGCCTTTGCAATCAAATTAAAATCTATTGTGTTATCTTCCA
CAGATCCAATGCTCCCATAAAATCGGACTAATGACATTTGGGCACGCGGAATCAAAGCTG
TGCTAAAAATCCGTTGATTTCTAACGGTAGGTTCAACACGTTTTGGCCTGTATACCAGTA
AATGGACGGGATAACGACATAATGATTGGGCAAGGCAATGGAAAATTATGAGGAATGTGA
CACAAACTATCAATGGTAAAAAGAAGCCAATATGACTAACTTCCTCCGTTCTGCACCGAA
ATAAGTTGT

consensusID : consensus_14#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 321
fasta sequence

                              [TGAGAACGAGGTGATAAATCACGTAGNAAAGTTATCATGAAAAGACAGTATTACTTAGNAAAATAGAATAATTAAGATGCCAAACAATAAAAGTTTAAATGGATTGTTTTGGNTTTGGNAAAAATATAAAATATGAAATCATCGCGTGAAAGACACTTAGCTTGGATTAATCTAATAAGTAATATTNGGNTAGTCTCTGGATNCTGCTGTNCGGATTGCTACTGTGCGATTATCAAATAGTGAAATCAGGTTGGTGAGTATGCCTTNGGCAANCAGATTAGANTCTATTGGTGTTATCTCCCACAGGATCCAATGCTCCCA]

[+] EMBL SM771                [TGAGAACGAGGTGATAAATCACGTAGNAAAGTTATCATGAAAAGACAGTATTACTTAGNAAAATAGAATAATTAAGATGCCAAACAATAAAAGTTTAAATGGATTGTTTTGGNTTTGGNAAAAATATAAAATATGAAATCATCGCGTGAAAGACACTTAGCTTGGATTAATCTAATAAGTAATATTNGGNTAGTCTCTGGATNCTGCTGTNCGGATTGCTACTGTGCGATTATCAAATAGTGAAATCAGGTTGGTGAGTATGCCTTNGGCAANCAGATTAGANTCTATTGGTGTTATCTCCCACAGGATCCAATGCTCCCA]




>consensus_14#1
TGAGAACGAGGTGATAAATCACGTAGNAAAGTTATCATGAAAAGACAGTATTACTTAGNA
AAATAGAATAATTAAGATGCCAAACAATAAAAGTTTAAATGGATTGTTTTGGNTTTGGNA
AAAATATAAAATATGAAATCATCGCGTGAAAGACACTTAGCTTGGATTAATCTAATAAGT
AATATTNGGNTAGTCTCTGGATNCTGCTGTNCGGATTGCTACTGTGCGATTATCAAATAG
TGAAATCAGGTTGGTGAGTATGCCTTNGGCAANCAGATTAGANTCTATTGGTGTTATCTC
CCACAGGATCCAATGCTCCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14#0      TTTTATTGAAACGAGGTGATAAATCACGTA-AAAAGTTATCATGAAAA-ACAGTTTTACT 58
consensus_14#1      -----TGAGAACGAGGTGATAAATCACGTAGNAAAGTTATCATGAAAAGACAGTATTACT 55
                         *   *********************  **************** ***** *****

consensus_14#0      TA-AAAAATAAAATAATTAAAATGCCAAACAATAAAAGTTTAAATGGATTGTTTTTGATT 117
consensus_14#1      TAGNAAAATAGAATAATTAAGATGCCAAACAATAAAAGTTTAAATGGATTGTTTTGGNTT 115
                    **  ****** ********* ********************************** * **

consensus_14#0      TTGCAAAAATATAAAATATGAAATCATCGCGTGAAAAACACTTACCTTG-ATTAATCTAA 176
consensus_14#1      TGGNAAAAATATAAAATATGAAATCATCGCGTGAAAGACACTTAGCTTGGATTAATCTAA 175
                    * * ******************************** ******* **** **********

consensus_14#0      TAAGTAATATTTTGTTAGTCTCTGGATTCTGTTGTTCGGATTGCTACTGTGCGATTATCA 236
consensus_14#1      TAAGTAATATTNGGNTAGTCTCTGGATNCTGCTGTNCGGATTGCTACTGTGCGATTATCA 235
                    ***********  * ************ *** *** ************************

consensus_14#0      AATAGTGAA-TCAGGTTG-TGAGTATGCCTTTG-CAATCAAATTAAAATCTATTG-TGTT 292
consensus_14#1      AATAGTGAAATCAGGTTGGTGAGTATGCCTTNGGCAANCAGATTAGANTCTATTGGTGTT 295
                    ********* ******** ************ * *** ** **** * ******* ****

consensus_14#0      ATCTTCCACAG-ATCCAATGCTCCCATAAAATCGGACTAATGACATTTGGGCACGCGGAA 351
consensus_14#1      ATCTCCCACAGGATCCAATGCTCCCA---------------------------------- 321
                    **** ****** **************                                  

consensus_14#0      TCAAAGCTGTGCTAAAAATCCGTTGATTTCTAACGGTAGGTTCAACACGTTTTGGCCTGT 411
consensus_14#1      ------------------------------------------------------------
                                                                                

consensus_14#0      ATACCAGTAAATGGACGGGATAACGACATAATGATTGGGCAAGGCAATGGAAAATTATGA 471
consensus_14#1      ------------------------------------------------------------
                                                                                

consensus_14#0      GGAATGTGACACAAACTATCAATGGTAAAAAGAAGCCAATATGACTAACTTCCTCCGTTC 531
consensus_14#1      ------------------------------------------------------------
                                                                                

consensus_14#0      TGCACCGAAATAAGTTGT 549
consensus_14#1      ------------------