cluster # 140

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Schistosoma mansoni
cluster # 140 cluster # 140 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_140#0 length = 603 sequences # 1

consensus_140#1 length = 472 sequences # 1

consensusID : consensus_140#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 603
fasta sequence

                              [GTCATAATTCATTACATCCCTACCTATGATCTCATCTTTTATGACCGACTATATATATATATATAATATGCGCATATATTTTTACTGTTGCGTTTATCACATAAAATTATATTCGTATTTCAACTTTTCATAAAACTGTAAAGTTCAAATTCGTAATTTTCTTTAGACCTATTAAATATATATATATATATATATATAGTTATACATCTCATAAATCTCACACACGGCGCTGTCACTTACGTAATGCCAGTCCATGAGTTTTAATAATATAAATAGATATTTTTTTTGTTTACATTTTCACTTTTATCCTGATTGCAATGTTCTCTTCTTTGCATTTTCTCACTCTTCTTTATTTTTTTTTAGTCTCCCTTCTCTATATATATCATATGTTGTGTGCACTTTTTTGTATACTAATCATTTGTTTATCATAATATTATATGTCACAGTTTATTATCTATAGTATAGCCTTTCATTTAAATAATAGAGTATTATTTTGTTCTGGGCGTATGATATTTATACCTCATAAATAGGGACTTATGTCCCCTACAAAAGAGTGCTGTCGTCTTATTAAAAGTTGACACATGAGACGAAAAGTTAGTGTTT]

[+] EMBL AI764934             [GTCATAATTCATTACATCCCTACCTATGATCTCATCTTTTATGACCGACTATATATATATATATAATATGCGCATATATTTTTACTGTTGCGTTTATCACATAAAATTATATTCGTATTTCAACTTTTCATAAAACTGTAAAGTTCAAATTCGTAATTTTCTTTAGACCTATTAAATATATATATATATATATATATAGTTATACATCTCATAAATCTCACACACGGCGCTGTCACTTACGTAATGCCAGTCCATGAGTTTTAATAATATAAATAGATATTTTTTTTGTTTACATTTTCACTTTTATCCTGATTGCAATGTTCTCTTCTTTGCATTTTCTCACTCTTCTTTATTTTTTTTTAGTCTCCCTTCTCTATATATATCATATGTTGTGTGCACTTTTTTGTATACTAATCATTTGTTTATCATAATATTATATGTCACAGTTTATTATCTATAGTATAGCCTTTCATTTAAATAATAGAGTATTATTTTGTTCTGGGCGTATGATATTTATACCTCATAAATAGGGACTTATGTCCCCTACAAAAGAGTGCTGTCGTCTTATTAAAAGTTGACACATGAGACGAAAAGTTAGTGTTT]




>consensus_140#0
GTCATAATTCATTACATCCCTACCTATGATCTCATCTTTTATGACCGACTATATATATAT
ATATAATATGCGCATATATTTTTACTGTTGCGTTTATCACATAAAATTATATTCGTATTT
CAACTTTTCATAAAACTGTAAAGTTCAAATTCGTAATTTTCTTTAGACCTATTAAATATA
TATATATATATATATATAGTTATACATCTCATAAATCTCACACACGGCGCTGTCACTTAC
GTAATGCCAGTCCATGAGTTTTAATAATATAAATAGATATTTTTTTTGTTTACATTTTCA
CTTTTATCCTGATTGCAATGTTCTCTTCTTTGCATTTTCTCACTCTTCTTTATTTTTTTT
TAGTCTCCCTTCTCTATATATATCATATGTTGTGTGCACTTTTTTGTATACTAATCATTT
GTTTATCATAATATTATATGTCACAGTTTATTATCTATAGTATAGCCTTTCATTTAAATA
ATAGAGTATTATTTTGTTCTGGGCGTATGATATTTATACCTCATAAATAGGGACTTATGT
CCCCTACAAAAGAGTGCTGTCGTCTTATTAAAAGTTGACACATGAGACGAAAAGTTAGTG
TTT

consensusID : consensus_140#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 472
fasta sequence

                              [ATCAACAATCTAATTGGAAGAGGATATATTAAATCATCAGAATAGAGTCATAATTCATTCATCCCTACCTATGATCTCATCTTTTATGACCGACTATATATATATATATATATATATAATATGCGCATATATTTTTACTGTTGCGTTTATCACATAAAATTATATTCGTATTTCAACTTTTCATAAAACTGTAAAGTTCAAATTCGTAATTTTCTTTAGACCTATTAATATATATATATATATATATATATATATATATATAGTTATACATCTCATAAATCTCACACACGGCGCTGTCACTTACGTAATGCCAGTCCATGAGTTTTAATAATATAAATAGATAATTTTTTTGTTTACATTTTCACTTTTATCCTGATTGCCAATGTTCTCCTTCTTTGGCATTTTCTCATTCTTCTTTATTTTTTTTTTTGGGCTTACCATCCCTATATTATTCAAATTGTTGTTTGTACCT]

[+] EMBL AI444544             [ATCAACAATCTAATTGGAAGAGGATATATTAAATCATCAGAATAGAGTCATAATTCATTCATCCCTACCTATGATCTCATCTTTTATGACCGACTATATATATATATATATATATATAATATGCGCATATATTTTTACTGTTGCGTTTATCACATAAAATTATATTCGTATTTCAACTTTTCATAAAACTGTAAAGTTCAAATTCGTAATTTTCTTTAGACCTATTAATATATATATATATATATATATATATATATATATAGTTATACATCTCATAAATCTCACACACGGCGCTGTCACTTACGTAATGCCAGTCCATGAGTTTTAATAATATAAATAGATAATTTTTTTGTTTACATTTTCACTTTTATCCTGATTGCCAATGTTCTCCTTCTTTGGCATTTTCTCATTCTTCTTTATTTTTTTTTTTGGGCTTACCATCCCTATATTATTCAAATTGTTGTTTGTACCT]




>consensus_140#1
ATCAACAATCTAATTGGAAGAGGATATATTAAATCATCAGAATAGAGTCATAATTCATTC
ATCCCTACCTATGATCTCATCTTTTATGACCGACTATATATATATATATATATATATAAT
ATGCGCATATATTTTTACTGTTGCGTTTATCACATAAAATTATATTCGTATTTCAACTTT
TCATAAAACTGTAAAGTTCAAATTCGTAATTTTCTTTAGACCTATTAATATATATATATA
TATATATATATATATATATATAGTTATACATCTCATAAATCTCACACACGGCGCTGTCAC
TTACGTAATGCCAGTCCATGAGTTTTAATAATATAAATAGATAATTTTTTTGTTTACATT
TTCACTTTTATCCTGATTGCCAATGTTCTCCTTCTTTGGCATTTTCTCATTCTTCTTTAT
TTTTTTTTTTGGGCTTACCATCCCTATATTATTCAAATTGTTGTTTGTACCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_140#0      ----------------------------------------------GTCATAATTCATTA 14
consensus_140#1      ATCAACAATCTAATTGGAAGAGGATATATTAAATCATCAGAATAGAGTCATAATTCATT- 59
                                                                   ************* 

consensus_140#0      CATCCCTACCTATGATCTCATCTTTTATGACCGACTATATATATATATATA--------A 66
consensus_140#1      CATCCCTACCTATGATCTCATCTTTTATGACCGACTATATATATATATATATATATATAA 119
                     ***************************************************        *

consensus_140#0      TATGCGCATATATTTTTACTGTTGCGTTTATCACATAAAATTATATTCGTATTTCAACTT 126
consensus_140#1      TATGCGCATATATTTTTACTGTTGCGTTTATCACATAAAATTATATTCGTATTTCAACTT 179
                     ************************************************************

consensus_140#0      TTCATAAAACTGTAAAGTTCAAATTCGTAATTTTCTTTAGACCTATTAA----------- 175
consensus_140#1      TTCATAAAACTGTAAAGTTCAAATTCGTAATTTTCTTTAGACCTATTAATATATATATAT 239
                     *************************************************           

consensus_140#0      ATATATATATATATATATATATAGTTATACATCTCATAAATCTCACACACGGCGCTGTCA 235
consensus_140#1      ATATATATATATATATATATATAGTTATACATCTCATAAATCTCACACACGGCGCTGTCA 299
                     ************************************************************

consensus_140#0      CTTACGTAATGCCAGTCCATGAGTTTTAATAATATAAATAGATATTTTTTTTGTTTACAT 295
consensus_140#1      CTTACGTAATGCCAGTCCATGAGTTTTAATAATATAAATAGATAATTTTTTTGTTTACAT 359
                     ******************************************** ***************

consensus_140#0      TTTCACTTTTATCCTGATTGC-AATGTTCTCTTCTTT--GCATTTTCTCACTCTTCTTTA 352
consensus_140#1      TTTCACTTTTATCCTGATTGCCAATGTTCTCCTTCTTTGGCATTTTCTCATTCTTCTTTA 419
                     ********************* ********* *  **  *********** *********

consensus_140#0      TTTTTTTTT---AGTCTCCCTTCTCTATATATATCATAT-GTTGTGTGCACTTTTTTGTA 408
consensus_140#1      TTTTTTTTTTTGGGCTTACCATCCCTATATTATTCAAATTGTTGTTTGTACCT------- 472
                     *********    *  * ** ** ******   *** ** ***** ** ** *       

consensus_140#0      TACTAATCATTTGTTTATCATAATATTATATGTCACAGTTTATTATCTATAGTATAGCCT 468
consensus_140#1      ------------------------------------------------------------
                                                                                 

consensus_140#0      TTCATTTAAATAATAGAGTATTATTTTGTTCTGGGCGTATGATATTTATACCTCATAAAT 528
consensus_140#1      ------------------------------------------------------------
                                                                                 

consensus_140#0      AGGGACTTATGTCCCCTACAAAAGAGTGCTGTCGTCTTATTAAAAGTTGACACATGAGAC 588
consensus_140#1      ------------------------------------------------------------
                                                                                 

consensus_140#0      GAAAAGTTAGTGTTT 603
consensus_140#1      ---------------