These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_140#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence [GTCATAATTCATTACATCCCTACCTATGATCTCATCTTTTATGACCGACTATATATATATATATAATATGCGCATATATTTTTACTGTTGCGTTTATCACATAAAATTATATTCGTATTTCAACTTTTCATAAAACTGTAAAGTTCAAATTCGTAATTTTCTTTAGACCTATTAAATATATATATATATATATATATAGTTATACATCTCATAAATCTCACACACGGCGCTGTCACTTACGTAATGCCAGTCCATGAGTTTTAATAATATAAATAGATATTTTTTTTGTTTACATTTTCACTTTTATCCTGATTGCAATGTTCTCTTCTTTGCATTTTCTCACTCTTCTTTATTTTTTTTTAGTCTCCCTTCTCTATATATATCATATGTTGTGTGCACTTTTTTGTATACTAATCATTTGTTTATCATAATATTATATGTCACAGTTTATTATCTATAGTATAGCCTTTCATTTAAATAATAGAGTATTATTTTGTTCTGGGCGTATGATATTTATACCTCATAAATAGGGACTTATGTCCCCTACAAAAGAGTGCTGTCGTCTTATTAAAAGTTGACACATGAGACGAAAAGTTAGTGTTT] [+] EMBL AI764934 [GTCATAATTCATTACATCCCTACCTATGATCTCATCTTTTATGACCGACTATATATATATATATAATATGCGCATATATTTTTACTGTTGCGTTTATCACATAAAATTATATTCGTATTTCAACTTTTCATAAAACTGTAAAGTTCAAATTCGTAATTTTCTTTAGACCTATTAAATATATATATATATATATATATAGTTATACATCTCATAAATCTCACACACGGCGCTGTCACTTACGTAATGCCAGTCCATGAGTTTTAATAATATAAATAGATATTTTTTTTGTTTACATTTTCACTTTTATCCTGATTGCAATGTTCTCTTCTTTGCATTTTCTCACTCTTCTTTATTTTTTTTTAGTCTCCCTTCTCTATATATATCATATGTTGTGTGCACTTTTTTGTATACTAATCATTTGTTTATCATAATATTATATGTCACAGTTTATTATCTATAGTATAGCCTTTCATTTAAATAATAGAGTATTATTTTGTTCTGGGCGTATGATATTTATACCTCATAAATAGGGACTTATGTCCCCTACAAAAGAGTGCTGTCGTCTTATTAAAAGTTGACACATGAGACGAAAAGTTAGTGTTT] consensusID : consensus_140#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 472 fasta sequence [ATCAACAATCTAATTGGAAGAGGATATATTAAATCATCAGAATAGAGTCATAATTCATTCATCCCTACCTATGATCTCATCTTTTATGACCGACTATATATATATATATATATATATAATATGCGCATATATTTTTACTGTTGCGTTTATCACATAAAATTATATTCGTATTTCAACTTTTCATAAAACTGTAAAGTTCAAATTCGTAATTTTCTTTAGACCTATTAATATATATATATATATATATATATATATATATATAGTTATACATCTCATAAATCTCACACACGGCGCTGTCACTTACGTAATGCCAGTCCATGAGTTTTAATAATATAAATAGATAATTTTTTTGTTTACATTTTCACTTTTATCCTGATTGCCAATGTTCTCCTTCTTTGGCATTTTCTCATTCTTCTTTATTTTTTTTTTTGGGCTTACCATCCCTATATTATTCAAATTGTTGTTTGTACCT] [+] EMBL AI444544 [ATCAACAATCTAATTGGAAGAGGATATATTAAATCATCAGAATAGAGTCATAATTCATTCATCCCTACCTATGATCTCATCTTTTATGACCGACTATATATATATATATATATATATAATATGCGCATATATTTTTACTGTTGCGTTTATCACATAAAATTATATTCGTATTTCAACTTTTCATAAAACTGTAAAGTTCAAATTCGTAATTTTCTTTAGACCTATTAATATATATATATATATATATATATATATATATATAGTTATACATCTCATAAATCTCACACACGGCGCTGTCACTTACGTAATGCCAGTCCATGAGTTTTAATAATATAAATAGATAATTTTTTTGTTTACATTTTCACTTTTATCCTGATTGCCAATGTTCTCCTTCTTTGGCATTTTCTCATTCTTCTTTATTTTTTTTTTTGGGCTTACCATCCCTATATTATTCAAATTGTTGTTTGTACCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_140#0 ----------------------------------------------GTCATAATTCATTA 14 consensus_140#1 ATCAACAATCTAATTGGAAGAGGATATATTAAATCATCAGAATAGAGTCATAATTCATT- 59 ************* consensus_140#0 CATCCCTACCTATGATCTCATCTTTTATGACCGACTATATATATATATATA--------A 66 consensus_140#1 CATCCCTACCTATGATCTCATCTTTTATGACCGACTATATATATATATATATATATATAA 119 *************************************************** * consensus_140#0 TATGCGCATATATTTTTACTGTTGCGTTTATCACATAAAATTATATTCGTATTTCAACTT 126 consensus_140#1 TATGCGCATATATTTTTACTGTTGCGTTTATCACATAAAATTATATTCGTATTTCAACTT 179 ************************************************************ consensus_140#0 TTCATAAAACTGTAAAGTTCAAATTCGTAATTTTCTTTAGACCTATTAA----------- 175 consensus_140#1 TTCATAAAACTGTAAAGTTCAAATTCGTAATTTTCTTTAGACCTATTAATATATATATAT 239 ************************************************* consensus_140#0 ATATATATATATATATATATATAGTTATACATCTCATAAATCTCACACACGGCGCTGTCA 235 consensus_140#1 ATATATATATATATATATATATAGTTATACATCTCATAAATCTCACACACGGCGCTGTCA 299 ************************************************************ consensus_140#0 CTTACGTAATGCCAGTCCATGAGTTTTAATAATATAAATAGATATTTTTTTTGTTTACAT 295 consensus_140#1 CTTACGTAATGCCAGTCCATGAGTTTTAATAATATAAATAGATAATTTTTTTGTTTACAT 359 ******************************************** *************** consensus_140#0 TTTCACTTTTATCCTGATTGC-AATGTTCTCTTCTTT--GCATTTTCTCACTCTTCTTTA 352 consensus_140#1 TTTCACTTTTATCCTGATTGCCAATGTTCTCCTTCTTTGGCATTTTCTCATTCTTCTTTA 419 ********************* ********* * ** *********** ********* consensus_140#0 TTTTTTTTT---AGTCTCCCTTCTCTATATATATCATAT-GTTGTGTGCACTTTTTTGTA 408 consensus_140#1 TTTTTTTTTTTGGGCTTACCATCCCTATATTATTCAAATTGTTGTTTGTACCT------- 472 ********* * * ** ** ****** *** ** ***** ** ** * consensus_140#0 TACTAATCATTTGTTTATCATAATATTATATGTCACAGTTTATTATCTATAGTATAGCCT 468 consensus_140#1 ------------------------------------------------------------ consensus_140#0 TTCATTTAAATAATAGAGTATTATTTTGTTCTGGGCGTATGATATTTATACCTCATAAAT 528 consensus_140#1 ------------------------------------------------------------ consensus_140#0 AGGGACTTATGTCCCCTACAAAAGAGTGCTGTCGTCTTATTAAAAGTTGACACATGAGAC 588 consensus_140#1 ------------------------------------------------------------ consensus_140#0 GAAAAGTTAGTGTTT 603 consensus_140#1 --------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||