cluster # 1405

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Schistosoma mansoni
cluster # 1405 cluster # 1405 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1405#0 length = 786 sequences # 1

consensus_1405#1 length = 598 sequences # 1

consensusID : consensus_1405#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 786
fasta sequence

                              [AGGCCANATTTCGGCACGAGGCCTGGGCGTAGGAGCCGTGGATGCCGAGTGCCTCCTGGTGACCCTGGAGCGAGGCGTTCACGAAGGTCGCGTCGTATTGCGGCCCCGGCGGCATGGCGGAGAGCTGCGCCAGGATCTGCGCCTTCTGCGCGTCGGTGGTCATGCCCTGGGCCGAGGGCGGGACGCCGAGCACGCCGCCGGCGACACCCGTCGCCGCGTTCACTGCGGTGCCGGCCACCGCCACAGGTGCTGCGACGAGGCCGCCGATCAGGCCGCCCGGGCCTGCCGCGGCGGGGCCGGGGACCGGGGCGCCGCCCGTATAGGCGTTGATCTTGCGGGCGAGGTTCACCTGTTCGACGACCTCGGCGCGGGCGAATTTCTTGACGCCGGGATTGGCGGACTTCTCGTGGGCGTCACGGGCCGTGTTCTCCAGGAACAGGCCGCCGGAAATGGTCATATGGAGATATGCGCCGGCCGGGATCGGGCCTGACGGCGTGACTTGCGCGATCGCGGTACTCGTGACCGACATGGCGGAGGTGGCGATCATCATCAGTGGCTCGATATGGCGCTAGAGAATATCGGACAAAGCATCACGCTAGCGACTTGCCAACGATGACCAGATCCCTGGTGATGCGTTGCCCTGCCATACATACACGGTTGATCAATGACTATGCCGGCGGACATCACAGCTTGTATATTCTATGTTTGCTCTCTACATTGATGGTCGGTTTTTATAACATCTGATCTGCCTGTAAACTGGGGAATGCTGTAAATTATGTCCGATAT]

[+] EMBL CD083189             [AGGCCANATTTCGGCACGAGGCCTGGGCGTAGGAGCCGTGGATGCCGAGTGCCTCCTGGTGACCCTGGAGCGAGGCGTTCACGAAGGTCGCGTCGTATTGCGGCCCCGGCGGCATGGCGGAGAGCTGCGCCAGGATCTGCGCCTTCTGCGCGTCGGTGGTCATGCCCTGGGCCGAGGGCGGGACGCCGAGCACGCCGCCGGCGACACCCGTCGCCGCGTTCACTGCGGTGCCGGCCACCGCCACAGGTGCTGCGACGAGGCCGCCGATCAGGCCGCCCGGGCCTGCCGCGGCGGGGCCGGGGACCGGGGCGCCGCCCGTATAGGCGTTGATCTTGCGGGCGAGGTTCACCTGTTCGACGACCTCGGCGCGGGCGAATTTCTTGACGCCGGGATTGGCGGACTTCTCGTGGGCGTCACGGGCCGTGTTCTCCAGGAACAGGCCGCCGGAAATGGTCATATGGAGATATGCGCCGGCCGGGATCGGGCCTGACGGCGTGACTTGCGCGATCGCGGTACTCGTGACCGACATGGCGGAGGTGGCGATCATCATCAGTGGCTCGATATGGCGCTAGAGAATATCGGACAAAGCATCACGCTAGCGACTTGCCAACGATGACCAGATCCCTGGTGATGCGTTGCCCTGCCATACATACACGGTTGATCAATGACTATGCCGGCGGACATCACAGCTTGTATATTCTATGTTTGCTCTCTACATTGATGGTCGGTTTTTATAACATCTGATCTGCCTGTAAACTGGGGAATGCTGTAAATTATGTCCGATAT]




>consensus_1405#0
AGGCCANATTTCGGCACGAGGCCTGGGCGTAGGAGCCGTGGATGCCGAGTGCCTCCTGGT
GACCCTGGAGCGAGGCGTTCACGAAGGTCGCGTCGTATTGCGGCCCCGGCGGCATGGCGG
AGAGCTGCGCCAGGATCTGCGCCTTCTGCGCGTCGGTGGTCATGCCCTGGGCCGAGGGCG
GGACGCCGAGCACGCCGCCGGCGACACCCGTCGCCGCGTTCACTGCGGTGCCGGCCACCG
CCACAGGTGCTGCGACGAGGCCGCCGATCAGGCCGCCCGGGCCTGCCGCGGCGGGGCCGG
GGACCGGGGCGCCGCCCGTATAGGCGTTGATCTTGCGGGCGAGGTTCACCTGTTCGACGA
CCTCGGCGCGGGCGAATTTCTTGACGCCGGGATTGGCGGACTTCTCGTGGGCGTCACGGG
CCGTGTTCTCCAGGAACAGGCCGCCGGAAATGGTCATATGGAGATATGCGCCGGCCGGGA
TCGGGCCTGACGGCGTGACTTGCGCGATCGCGGTACTCGTGACCGACATGGCGGAGGTGG
CGATCATCATCAGTGGCTCGATATGGCGCTAGAGAATATCGGACAAAGCATCACGCTAGC
GACTTGCCAACGATGACCAGATCCCTGGTGATGCGTTGCCCTGCCATACATACACGGTTG
ATCAATGACTATGCCGGCGGACATCACAGCTTGTATATTCTATGTTTGCTCTCTACATTG
ATGGTCGGTTTTTATAACATCTGATCTGCCTGTAAACTGGGGAATGCTGTAAATTATGTC
CGATAT

consensusID : consensus_1405#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 598
fasta sequence

                              [AGGCCGCCCGGGCCTGCCGCGGCGGGGCCGGGGACCGGGGCGCCGCCCGTATAGGCGTTGATCTTGCGGGCGAGGTTCACCTGTTCGACGACCTCGGCGCGGGCGAATTTCTTGACGCCGGGATTGGCGGTCTTCGCGTGGGCGTCGCGGGCCGTGTTCTCCAGGAACAGGCCGCCGGTAGTGGCCATCTGGAGATAGGCGCCGGTCGGGATCGCGCCGGCCGGCGTGACTTGCGCGATGGCGGTACGCGTGACCGCCAGGGCGGCGGTGGCGCCCAGCATTGTGGTGAGGAGATCGCGACGGTGCATCATGGGATAGGCTTCCGGATTGGGTGAGGCACCCGACGCCCCGATCATCGCTTGAGGCGCTGCCCGGCGAACCGCACAGGGCGGACAAGGTTCCTGTCGGCGGGCGCGCGGCGCTGCCGAACCGAGCCACGGGCAATTCGCCGGATGGACCGGAATTCACACCCCAACGATCGGTCTTTCGCCTTCCGGTGCGGTTTTCGTTGCCTTGCCTGCAGCTTTATCTCCGATCGATACAGATCTAGATTGGCGGACCGCACGAAGCGGCCATGCGTCCGCACCGCGTGCGGGCG]

[-] EMBL CD076764             [AGGCCGCCCGGGCCTGCCGCGGCGGGGCCGGGGACCGGGGCGCCGCCCGTATAGGCGTTGATCTTGCGGGCGAGGTTCACCTGTTCGACGACCTCGGCGCGGGCGAATTTCTTGACGCCGGGATTGGCGGTCTTCGCGTGGGCGTCGCGGGCCGTGTTCTCCAGGAACAGGCCGCCGGTAGTGGCCATCTGGAGATAGGCGCCGGTCGGGATCGCGCCGGCCGGCGTGACTTGCGCGATGGCGGTACGCGTGACCGCCAGGGCGGCGGTGGCGCCCAGCATTGTGGTGAGGAGATCGCGACGGTGCATCATGGGATAGGCTTCCGGATTGGGTGAGGCACCCGACGCCCCGATCATCGCTTGAGGCGCTGCCCGGCGAACCGCACAGGGCGGACAAGGTTCCTGTCGGCGGGCGCGCGGCGCTGCCGAACCGAGCCACGGGCAATTCGCCGGATGGACCGGAATTCACACCCCAACGATCGGTCTTTCGCCTTCCGGTGCGGTTTTCGTTGCCTTGCCTGCAGCTTTATCTCCGATCGATACAGATCTAGATTGGCGGACCGCACGAAGCGGCCATGCGTCCGCACCGCGTGCGGGCG]




>consensus_1405#1
AGGCCGCCCGGGCCTGCCGCGGCGGGGCCGGGGACCGGGGCGCCGCCCGTATAGGCGTTG
ATCTTGCGGGCGAGGTTCACCTGTTCGACGACCTCGGCGCGGGCGAATTTCTTGACGCCG
GGATTGGCGGTCTTCGCGTGGGCGTCGCGGGCCGTGTTCTCCAGGAACAGGCCGCCGGTA
GTGGCCATCTGGAGATAGGCGCCGGTCGGGATCGCGCCGGCCGGCGTGACTTGCGCGATG
GCGGTACGCGTGACCGCCAGGGCGGCGGTGGCGCCCAGCATTGTGGTGAGGAGATCGCGA
CGGTGCATCATGGGATAGGCTTCCGGATTGGGTGAGGCACCCGACGCCCCGATCATCGCT
TGAGGCGCTGCCCGGCGAACCGCACAGGGCGGACAAGGTTCCTGTCGGCGGGCGCGCGGC
GCTGCCGAACCGAGCCACGGGCAATTCGCCGGATGGACCGGAATTCACACCCCAACGATC
GGTCTTTCGCCTTCCGGTGCGGTTTTCGTTGCCTTGCCTGCAGCTTTATCTCCGATCGAT
ACAGATCTAGATTGGCGGACCGCACGAAGCGGCCATGCGTCCGCACCGCGTGCGGGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1405#0      AGGCCANATTTCGGCACGAGGCCTGGGCGTAGGAGCCGTGGATGCCGAGTGCCTCCTGGT 60
consensus_1405#1      ------------------------------------------------------------
                                                                                  

consensus_1405#0      GACCCTGGAGCGAGGCGTTCACGAAGGTCGCGTCGTATTGCGGCCCCGGCGGCATGGCGG 120
consensus_1405#1      ------------------------------------------------------------
                                                                                  

consensus_1405#0      AGAGCTGCGCCAGGATCTGCGCCTTCTGCGCGTCGGTGGTCATGCCCTGGGCCGAGGGCG 180
consensus_1405#1      ------------------------------------------------------------
                                                                                  

consensus_1405#0      GGACGCCGAGCACGCCGCCGGCGACACCCGTCGCCGCGTTCACTGCGGTGCCGGCCACCG 240
consensus_1405#1      ------------------------------------------------------------
                                                                                  

consensus_1405#0      CCACAGGTGCTGCGACGAGGCCGCCGATCAGGCCGCCCGGGCCTGCCGCGGCGGGGCCGG 300
consensus_1405#1      -----------------------------AGGCCGCCCGGGCCTGCCGCGGCGGGGCCGG 31
                                                   *******************************

consensus_1405#0      GGACCGGGGCGCCGCCCGTATAGGCGTTGATCTTGCGGGCGAGGTTCACCTGTTCGACGA 360
consensus_1405#1      GGACCGGGGCGCCGCCCGTATAGGCGTTGATCTTGCGGGCGAGGTTCACCTGTTCGACGA 91
                      ************************************************************

consensus_1405#0      CCTCGGCGCGGGCGAATTTCTTGACGCCGGGATTGGCGGACTTCTCGTGGGCGTCACGGG 420
consensus_1405#1      CCTCGGCGCGGGCGAATTTCTTGACGCCGGGATTGGCGGTCTTCGCGTGGGCGTCGCGGG 151
                      *************************************** **** ********** ****

consensus_1405#0      CCGTGTTCTCCAGGAACAGGCCGCCGGAAATGGTCATATGGAGATATGCGCCGGCCGGGA 480
consensus_1405#1      CCGTGTTCTCCAGGAACAGGCCGCCGGTAGTGGCCATCTGGAGATAGGCGCCGGTCGGGA 211
                      *************************** * *** *** ******** ******* *****

consensus_1405#0      TCGGGCCTGACGGCGTGACTTGCGCGATCGCGGTACTCGTGACCGACATGGCGGAGGTGG 540
consensus_1405#1      TCGCGCCGGCCGGCGTGACTTGCGCGATGGCGGTACGCGTGACCGCCAGGGCGGCGGTGG 271
                      *** *** * ****************** ******* ******** ** ***** *****

consensus_1405#0      CGATCATCATCAGTGGCTCGATATGGCGCTAGAGAATATCGGACAAAGCATCACGCTAGC 600
consensus_1405#1      CGCCCAGCATTGTGGTGAGGAGATCGCGACGGTGCATCATGGGATAGGCTTCCGGATTGG 331
                      **  ** ***    *    ** ** ***   * * **   **   * ** **  * * * 

consensus_1405#0      GACTTGCCAACGATGACCAGATCCCTGGT-GATGCGTTGCCCTGCCATACATACACGGTT 659
consensus_1405#1      GTGAGGCACCCGACGCCCCGATCATCGCTTGAGGCGCTGCCCGGCGAACCGCACAGGGCG 391
                      *    **   *** * ** ****   * * ** *** ***** ** *  *  *** **  

consensus_1405#0      GATCAATGACTATGCCGGCGGACATCACAGC-TTGTATATTCTATGTTTGCTCTCTACAT 718
consensus_1405#1      GA-CAAGGTTCCTGTCGGCGGGCG-CGCGGCGCTGCCGAACCGAGCCACGGGCAATTCGC 449
                      ** *** *    ** ****** *  * * **  **   *  * *     *  *  * *  

consensus_1405#0      TG-ATGG-TCGGTTTTTATAACATC-TGATCTGCCTGTAAACTGGGGAATGCTGTAAATT 775
consensus_1405#1      CGGATGGACCGGAATTCACACCCCAACGATCGGTCTTTCGCCTTCCGG-TGCGGTTTTCG 508
                       * ****  ***  ** * * *     **** * ** *   **   *  *** **     

consensus_1405#0      ATGTCCGATAT------------------------------------------------- 786
consensus_1405#1      TTGCCTTGCCTGCAGCTTTATCTCCGATCGATACAGATCTAGATTGGCGGACCGCACGAA 568
                       ** *     *                                                 

consensus_1405#0      ------------------------------
consensus_1405#1      GCGGCCATGCGTCCGCACCGCGTGCGGGCG 598