cluster # 1426

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Schistosoma mansoni
cluster # 1426 cluster # 1426 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1426#0 length = 424 sequences # 1

consensus_1426#1 length = 358 sequences # 1

consensusID : consensus_1426#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 424
fasta sequence

                              [ATGTCTGTTTATCTGGACAATGAATGATTAAAATGATCGATTTTGTTGTTGTTTTTTCTTCAAAAATAAAAAGAGTATTTTCTCTAGACATTTCTCTCTCTCCTTCTTATCGATTGTAAGTGATTATCTTCAATGTACGTGGTATTGTATGACAGAATGGTTCCCTTCTTATCGTTCTTCTTCTGTAATAAAAAGGAATACCCCATCCATTATGACTGAATTGTATTTCGCTTAAGTTTCTTTCTTTCATCATTATTTTGATTACATACCGTTATGTATTGGTAAATACAATTCTGTTGTTGGTCATCATGATCATCATCATTTATTGATTGAGATCTCTTTGTATCGATTGAATTTTGTTATTTTGTGTAATCAGTAAACATTTTCTCTCTGTTTTTCGATCTTGTTTGTATAAGTGTCGNTA]

[+] EMBL CD116866             [ATGTCTGTTTATCTGGACAATGAATGATTAAAATGATCGATTTTGTTGTTGTTTTTTCTTCAAAAATAAAAAGAGTATTTTCTCTAGACATTTCTCTCTCTCCTTCTTATCGATTGTAAGTGATTATCTTCAATGTACGTGGTATTGTATGACAGAATGGTTCCCTTCTTATCGTTCTTCTTCTGTAATAAAAAGGAATACCCCATCCATTATGACTGAATTGTATTTCGCTTAAGTTTCTTTCTTTCATCATTATTTTGATTACATACCGTTATGTATTGGTAAATACAATTCTGTTGTTGGTCATCATGATCATCATCATTTATTGATTGAGATCTCTTTGTATCGATTGAATTTTGTTATTTTGTGTAATCAGTAAACATTTTCTCTCTGTTTTTCGATCTTGTTTGTATAAGTGTCGNTA]




>consensus_1426#0
ATGTCTGTTTATCTGGACAATGAATGATTAAAATGATCGATTTTGTTGTTGTTTTTTCTT
CAAAAATAAAAAGAGTATTTTCTCTAGACATTTCTCTCTCTCCTTCTTATCGATTGTAAG
TGATTATCTTCAATGTACGTGGTATTGTATGACAGAATGGTTCCCTTCTTATCGTTCTTC
TTCTGTAATAAAAAGGAATACCCCATCCATTATGACTGAATTGTATTTCGCTTAAGTTTC
TTTCTTTCATCATTATTTTGATTACATACCGTTATGTATTGGTAAATACAATTCTGTTGT
TGGTCATCATGATCATCATCATTTATTGATTGAGATCTCTTTGTATCGATTGAATTTTGT
TATTTTGTGTAATCAGTAAACATTTTCTCTCTGTTTTTCGATCTTGTTTGTATAAGTGTC
GNTA

consensusID : consensus_1426#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 358
fasta sequence

                              [ACTGTGAGGATCCCCTCATAGGTGCGCAGGAATGTACGTGGTATTGTATGACAGAATGGTTCCTTTCTTATCGTTCTTCTTCTGTAATAAAAAGGAGGACCCCATCCATTATGACTGAATTGTATTTCGCATAAGTTTCTTTCTTTCATCATTATTTTGATTACATACCGTTATGTATTGGTAAATACAATTCTGTTGTTGGTCATCATGATCATCATCATTTATTGATTGAGATCTCTTTGTATCGATTGAATTTTGATATTTTGTGTAATCAGTAAACATTTTCTCTCTGTTTTTCGATCTTGTTTGTATAAATGTCGTTATTGTTCTACAATGCTAAATGGAGTACATACTCTAC]

[+] EMBL CD060781             [ACTGTGAGGATCCCCTCATAGGTGCGCAGGAATGTACGTGGTATTGTATGACAGAATGGTTCCTTTCTTATCGTTCTTCTTCTGTAATAAAAAGGAGGACCCCATCCATTATGACTGAATTGTATTTCGCATAAGTTTCTTTCTTTCATCATTATTTTGATTACATACCGTTATGTATTGGTAAATACAATTCTGTTGTTGGTCATCATGATCATCATCATTTATTGATTGAGATCTCTTTGTATCGATTGAATTTTGATATTTTGTGTAATCAGTAAACATTTTCTCTCTGTTTTTCGATCTTGTTTGTATAAATGTCGTTATTGTTCTACAATGCTAAATGGAGTACATACTCTAC]




>consensus_1426#1
ACTGTGAGGATCCCCTCATAGGTGCGCAGGAATGTACGTGGTATTGTATGACAGAATGGT
TCCTTTCTTATCGTTCTTCTTCTGTAATAAAAAGGAGGACCCCATCCATTATGACTGAAT
TGTATTTCGCATAAGTTTCTTTCTTTCATCATTATTTTGATTACATACCGTTATGTATTG
GTAAATACAATTCTGTTGTTGGTCATCATGATCATCATCATTTATTGATTGAGATCTCTT
TGTATCGATTGAATTTTGATATTTTGTGTAATCAGTAAACATTTTCTCTCTGTTTTTCGA
TCTTGTTTGTATAAATGTCGTTATTGTTCTACAATGCTAAATGGAGTACATACTCTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1426#0      ATGTCTGTTTATCTGGACAATGAATGATTAAAATGATCGATTTTGTTGTTGTTTTTTCTT 60
consensus_1426#1      ------------------------------------------------------------
                                                                                  

consensus_1426#0      CAAAAATAAAAAGAGTATTTTCTCTAGACATTTCTCTCTCTCCTTCTTATCGATTGTAAG 120
consensus_1426#1      --------------------------------------ACTGTGAGGATCCCCTCATAGG 22
                                                             **         *  *  ** *

consensus_1426#0      TGATTATCTTCAATGTACGTGGTATTGTATGACAGAATGGTTCCCTTCTTATCGTTCTTC 180
consensus_1426#1      TGCGCAGG---AATGTACGTGGTATTGTATGACAGAATGGTTCCTTTCTTATCGTTCTTC 79
                      **   *     ********************************* ***************

consensus_1426#0      TTCTGTAATAAAAAGGAATACCCCATCCATTATGACTGAATTGTATTTCGCTTAAGTTTC 240
consensus_1426#1      TTCTGTAATAAAAAGGAGGACCCCATCCATTATGACTGAATTGTATTTCGCATAAGTTTC 139
                      *****************  ******************************** ********

consensus_1426#0      TTTCTTTCATCATTATTTTGATTACATACCGTTATGTATTGGTAAATACAATTCTGTTGT 300
consensus_1426#1      TTTCTTTCATCATTATTTTGATTACATACCGTTATGTATTGGTAAATACAATTCTGTTGT 199
                      ************************************************************

consensus_1426#0      TGGTCATCATGATCATCATCATTTATTGATTGAGATCTCTTTGTATCGATTGAATTTTGT 360
consensus_1426#1      TGGTCATCATGATCATCATCATTTATTGATTGAGATCTCTTTGTATCGATTGAATTTTGA 259
                      *********************************************************** 

consensus_1426#0      TATTTTGTGTAATCAGTAAACATTTTCTCTCTGTTTTTCGATCTTGTTTGTATAAGTGTC 420
consensus_1426#1      TATTTTGTGTAATCAGTAAACATTTTCTCTCTGTTTTTCGATCTTGTTTGTATAAATGTC 319
                      ******************************************************* ****

consensus_1426#0      GNTA----------------------------------- 424
consensus_1426#1      GTTATTGTTCTACAATGCTAAATGGAGTACATACTCTAC 358
                      * **