These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1438#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence [ACTTTTCATACAATTCATCAGTTTAAAGTGATAGAATACTGACGGATATTAGTTATTTTCTGGGATATTTACTCAGTTCGATAGGAACTCTTTATGTGTTTGACAATTTACACACTATTTCTTCACATCCAGCTTTTAAGTATTTGCATAACCGACAAACAGGCGAACCAACAACATTGAAATAATCTCCATCGATCCGCTCAATTAAACTTGAACCCAACCCCTGGATACCATAAGCTCCAGCTTTATCCATTGGCTCTTCAGACTGAACATACCCCTCAATCATGAGAGGACTTAATTCAATCATCTTTACATTTGNTACTTCATGAAATTGATCAGTTTTCTTGCTGTTGCCAGATACAATCCACTTTTAACATACACCAGTTATTACTTGGATGACATTTCCACTCAAACAACTTGAGTATATTTACAGGGTCCACGTGACTTGAAGGTTTTGCCAAAAATACANTCCCTCAAACATACCATAGTATCTGCTCCTATGACTACATAGNTGCGTTCACTGATNATCAAGGTATTCACCACTGCATCCACCTTTAGTTTAGCTATGGCTTCCATATGAGCTGGTATTGATTGAAAGGTTTCTGAAGGGCCTCCTTGCGGAATTTCTTTGGGCCCCCTCTCTCCCCCACAAGGAGGGGGGGGGGGGCC] [+] EMBL CD076896 [ACTTTTCATACAATTCATCAGTTTAAAGTGATAGAATACTGACGGATATTAGTTATTTTCTGGGATATTTACTCAGTTCGATAGGAACTCTTTATGTGTTTGACAATTTACACACTATTTCTTCACATCCAGCTTTTAAGTATTTGCATAACCGACAAACAGGCGAACCAACAACATTGAAATAATCTCCATCGATCCGCTCAATTAAACTTGAACCCAACCCCTGGATACCATAAGCTCCAGCTTTATCCATTGGCTCTTCAGACTGAACATACCCCTCAATCATGAGAGGACTTAATTCAATCATCTTTACATTTGNTACTTCATGAAATTGATCAGTTTTCTTGCTGTTGCCAGATACAATCCACTTTTAACATACACCAGTTATTACTTGGATGACATTTCCACTCAAACAACTTGAGTATATTTACAGGGTCCACGTGACTTGAAGGTTTTGCCAAAAATACANTCCCTCAAACATACCATAGTATCTGCTCCTATGACTACATAGNTGCGTTCACTGATNATCAAGGTATTCACCACTGCATCCACCTTTAGTTTAGCTATGGCTTCCATATGAGCTGGTATTGATTGAAAGGTTTCTGAAGGGCCTCCTTGCGGAATTTCTTTGGGCCCCCTCTCTCCCCCACAAGGAGGGGGGGGGGGGCC] consensusID : consensus_1438#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 301 fasta sequence [CAGACTGAACATACCCCTCAATCATGAGAGGACTTAATTCAATCATCTTTACATTTGTTACTTCATGAAATTGATCCGTTTTCTGCTGTTTCCCAGATACAATCCACTTTAGACATACACCAGTTATCACTTGATGAACAATCCCACTCAAATGAGTATATTTACAGCGTCCACGTGACTTGAGGGTTTGCCAAAAATACAACCCTCAAGACATACCATAGTGTCTGCTCCTATGACTACATAGTTACGTTCACTGATATCCAAGGTATTCACCACTGCATCCACTTTAAGTTTAGCTATG] [-] EMBL CD162534 [CAGACTGAACATACCCCTCAATCATGAGAGGACTTAATTCAATCATCTTTACATTTGTTACTTCATGAAATTGATCCGTTTTCTGCTGTTTCCCAGATACAATCCACTTTAGACATACACCAGTTATCACTTGATGAACAATCCCACTCAAATGAGTATATTTACAGCGTCCACGTGACTTGAGGGTTTGCCAAAAATACAACCCTCAAGACATACCATAGTGTCTGCTCCTATGACTACATAGTTACGTTCACTGATATCCAAGGTATTCACCACTGCATCCACTTTAAGTTTAGCTATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1438#0 ACTTTTCATACAATTCATCAGTTTAAAGTGATAGAATACTGACGGATATTAGTTATTTTC 60 consensus_1438#1 ------------------------------------------------------------ consensus_1438#0 TGGGATATTTACTCAGTTCGATAGGAACTCTTTATGTGTTTGACAATTTACACACTATTT 120 consensus_1438#1 ------------------------------------------------------------ consensus_1438#0 CTTCACATCCAGCTTTTAAGTATTTGCATAACCGACAAACAGGCGAACCAACAACATTGA 180 consensus_1438#1 ------------------------------------------------------------ consensus_1438#0 AATAATCTCCATCGATCCGCTCAATTAAACTTGAACCCAACCCCTGGATACCATAAGCTC 240 consensus_1438#1 ------------------------------------------------------------ consensus_1438#0 CAGCTTTATCCATTGGCTCTTCAGACTGAACATACCCCTCAATCATGAGAGGACTTAATT 300 consensus_1438#1 ---------------------CAGACTGAACATACCCCTCAATCATGAGAGGACTTAATT 39 *************************************** consensus_1438#0 CAATCATCTTTACATTTGNTACTTCATGAAATTGATCAGTTTTCTTGCTGTTGCCAGATA 360 consensus_1438#1 CAATCATCTTTACATTTGTTACTTCATGAAATTGATCCGTTTTCTGCTGTTTCCCAGATA 99 ****************** ****************** ******* ** ******* consensus_1438#0 CAATCCACTTTTAACATACACCAGTTATTACTTGGATGACATTTCCACTCAAACAACTTG 420 consensus_1438#1 CAATCCACTTTAGACATACACCAGTTATCACTTGATGAACAATCCCACTCAAA-----TG 154 *********** *************** ***** *** * ********* ** consensus_1438#0 AGTATATTTACAGGGTCCACGTGACTTGAAGGTTTTGCCAAAAATACANTCCCTCAAACA 480 consensus_1438#1 AGTATATTTACAGCGTCCACGTGACTTGAGGGTTT-GCCAAAAATACAACCCTCAAGACA 213 ************* *************** ***** ************ ** * *** consensus_1438#0 TACCATAGTATCTGCTCCTATGACTACATAGNTGCGTTCACTGATNATCAAGGTATTCAC 540 consensus_1438#1 TACCATAGTGTCTGCTCCTATGACTACATAGTTACGTTCACTGATATCCAAGGTATTCAC 273 ********* ********************* * *********** ************ consensus_1438#0 CACTGCATCCACCTTTAGTTTAGCTATGGCTTCCATATGAGCTGGTATTGATTGAAAGGT 600 consensus_1438#1 CACTGCATCCACTTTAAGTTTAGCTATG-------------------------------- 301 ************ ** ************ consensus_1438#0 TTCTGAAGGGCCTCCTTGCGGAATTTCTTTGGGCCCCCTCTCTCCCCCACAAGGAGGGGG 660 consensus_1438#1 ------------------------------------------------------------ consensus_1438#0 GGGGGGGCC 669 consensus_1438#1 --------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||