These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1443#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 647 fasta sequence [TTTTGTTTTTATTTGAAATGATACATATACACAGAGGGTATGAAGTTATCAAAATGATGGTACATAACTAATAGGACAATAATATGAGTTGCAAGGAGAATACTTCTTTTTTACAAAGTTGTTTTGTTTTCTACAAAGCGGATAGAAATATGCGTATTGAAAATCTCGTCTTATTAACCGGGACTTCGTTGCATTTTTGTTTTCGGTGGTAGTACACCGCCGATAGCCTTTTGATGTTTTGGACTTTTTCGCCTTGAAATCTCGCCAACTAGCAACACGATTAACACGACTTTATTGATAATTTTTTTTGCACTCTTTTGCATACGCCAAGAGTGATATCCCTTATTACGTCTCCTAAAATTAGCGCTATCATTCTGCAGGATTGAGAAGATACACTTGCACGCGTCTATAGCTAAATGCAGTGACAGAGAGCATGTATGCATAATTGTGCGAACACACCACTGGAGAGAGTCTTACCTTCGGATGGTATTGGGATCAATATTTCTTTAGCATACAGAACTCACAGGGTAAGGAAATTCTGTTCAAGAGGAGANCTACAGATACGTCTGGTACTCNTTAACACANGGGGGTACGATCGCTGAAATGCGGAGCTTAGCAAACTTTGATCTCCCGGTTCCGGAAGGCTT] [+] EMBL CD076928 [TTTTGTTTTTATTTGAAATGATACATATACACAGAGGGTATGAAGTTATCAAAATGATGGTACATAACTAATAGGACAATAATATGAGTTGCAAGGAGAATACTTCTTTTTTACAAAGTTGTTTTGTTTTCTACAAAGCGGATAGAAATATGCGTATTGAAAATCTCGTCTTATTAACCGGGACTTCGTTGCATTTTTGTTTTCGGTGGTAGTACACCGCCGATAGCCTTTTGATGTTTTGGACTTTTTCGCCTTGAAATCTCGCCAACTAGCAACACGATTAACACGACTTTATTGATAATTTTTTTTGCACTCTTTTGCATACGCCAAGAGTGATATCCCTTATTACGTCTCCTAAAATTAGCGCTATCATTCTGCAGGATTGAGAAGATACACTTGCACGCGTCTATAGCTAAATGCAGTGACAGAGAGCATGTATGCATAATTGTGCGAACACACCACTGGAGAGAGTCTTACCTTCGGATGGTATTGGGATCAATATTTCTTTAGCATACAGAACTCACAGGGTAAGGAAATTCTGTTCAAGAGGAGANCTACAGATACGTCTGGTACTCNTTAACACANGGGGGTACGATCGCTGAAATGCGGAGCTTAGCAAACTTTGATCTCCCGGTTCCGGAAGGCTT] consensusID : consensus_1443#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence [AAAGTGTTTTGTTTTTATTTGAAATGATACATATACACAGAGGGTATGAAGTTATCAAAATGATGGTACATAACTAATAGGACAATAATATGAGTTCAAAGGAGAATACTTCTTTCTTACAAGTTGTTTTGTTTCCTACAAAGCGGATAGAAATATACGTATTGAAAACCTCGTCTTATAACCGGGTCTTTGTTCCAATTTAGTTTCGGTGGTTTAACCCGCAGATACACTTGATGTTTGGGCATTTTCGCCATTGAAACATCAGCCAACTCATCAGTGCCAGAATCCATGCAAGCCAAGGGGGCCCACATAGTCATGGAGCAGGCCAGCACCAGGGGTGGGGCATCAAGCATTTTTGTCCACTTTAGT] [+] EMBL SMAA69896 [AAAGTGTTTTGTTTTTATTTGAAATGATACATATACACAGAGGGTATGAAGTTATCAAAATGATGGTACATAACTAATAGGACAATAATATGAGTTCAAAGGAGAATACTTCTTTCTTACAAGTTGTTTTGTTTCCTACAAAGCGGATAGAAATATACGTATTGAAAACCTCGTCTTATAACCGGGTCTTTGTTCCAATTTAGTTTCGGTGGTTTAACCCGCAGATACACTTGATGTTTGGGCATTTTCGCCATTGAAACATCAGCCAACTCATCAGTGCCAGAATCCATGCAAGCCAAGGGGGCCCACATAGTCATGGAGCAGGCCAGCACCAGGGGTGGGGCATCAAGCATTTTTGTCCACTTTAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1443#0 ------TTTTGTTTTTATTTGAAATGATACATATACACAGAGGGTATGAAGTTATCAAAA 54 consensus_1443#1 AAAGTGTTTTGTTTTTATTTGAAATGATACATATACACAGAGGGTATGAAGTTATCAAAA 60 ****************************************************** consensus_1443#0 TGATGGTACATAACTAATAGGACAATAATATGAGTTGCAAGGAGAATACTTCTTTTTTAC 114 consensus_1443#1 TGATGGTACATAACTAATAGGACAATAATATGAGTTCAAAGGAGAATACTTCTTTCTTAC 120 ************************************ ***************** **** consensus_1443#0 AAAGTTGTTTTGTTTTCTACAAAGCGGATAGAAATATGCGTATTGAAAATCTCGTCTTAT 174 consensus_1443#1 AA-GTTGTTTTGTTTCCTACAAAGCGGATAGAAATATACGTATTGAAAACCTCGTCTTAT 179 ** ************ ********************* *********** ********** consensus_1443#0 TAACCGGGACTTCGTTGCATTTTTGTTTTCGGTGGTAGTACACCGCCGATAGCCTTTTGA 234 consensus_1443#1 -AACCGGGTCTTTGTTCCAATTTAGTTT-CGGTGGTT-TAACCCGCAGATA--CACTTGA 234 ******* *** *** ** *** **** ******* ** **** **** * **** consensus_1443#0 TGTTTTGGACTTTTTCGCC-TTGAAATCTC-GCCAACT----AGCAACACGATTAACACG 288 consensus_1443#1 TGTTT-GGGCATTTTCGCCATTGAAACATCAGCCAACTCATCAGTGCCAGAATCCATGCA 293 ***** ** * ******** ****** ** ******* ** ** ** * * consensus_1443#0 ACTTTATTGATAATTTTTTTTGCACTCTTTTGCATACGCCAAGAGTGATATCCCTTATTA 348 consensus_1443#1 AGCCAAGGGGGCCCACATAGTCATGGAGCAGGCCAGCACCAGGGGTGGGGCATCA-AGCA 352 * * * * * ** * *** * *** * * * consensus_1443#0 CGTCTCCTAAAATTAGCGCTATCATTCTGCAGGATTGAGAAGATACACTTGCACGCGTCT 408 consensus_1443#1 TTTTTGTCCACTTTAGT------------------------------------------- 369 * * * **** consensus_1443#0 ATAGCTAAATGCAGTGACAGAGAGCATGTATGCATAATTGTGCGAACACACCACTGGAGA 468 consensus_1443#1 ------------------------------------------------------------ consensus_1443#0 GAGTCTTACCTTCGGATGGTATTGGGATCAATATTTCTTTAGCATACAGAACTCACAGGG 528 consensus_1443#1 ------------------------------------------------------------ consensus_1443#0 TAAGGAAATTCTGTTCAAGAGGAGANCTACAGATACGTCTGGTACTCNTTAACACANGGG 588 consensus_1443#1 ------------------------------------------------------------ consensus_1443#0 GGTACGATCGCTGAAATGCGGAGCTTAGCAAACTTTGATCTCCCGGTTCCGGAAGGCTT 647 consensus_1443#1 ----------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||