cluster # 1446

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Schistosoma mansoni
cluster # 1446 cluster # 1446 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1446#0 length = 675 sequences # 1

consensus_1446#1 length = 594 sequences # 1

consensusID : consensus_1446#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 675
fasta sequence

                              [CTCGGTACCCGTTCTGCGATAATTATAATTAGTCAAATTGATATGCTAACTAGGAATTCTCGGAACTGTCCAATTCGATTCAGATAAAACTCTGTGGGCACGACTGGGCATACTGCGTTTGAAATTAAAATTACGCGCGGGACCAAGTACAAAGGAATTACTAATTAGCACAATCACTACGGTTATTCAGCTAGTAGTAAAATTAAATAAGACTGTAACATAGTTCGACGTTGAGATGGAGGACATTTGTAGCTCAGGTGGATAATATCGCATTTCTGAGCATGTTCCAACGAAACTGAGGCTTCGAGGGACCAGGGCTCTCAACAGTGCAATAGCTCGGCATTTACTTGACACTGGGCACAGCATTGATATTTCTCGTGCTTTCAAAATTATCAGCAGACAAAGAAGTACGGCTGCTCTCCGGTTTGCTGAAGCGATCGCGATAAAAAAACAAACCGGATCTATTTATTCAAAAAGAGACAGCGATAAACTTATTACTACCCTGGTGATCTACTTTTTTTGTTTTAGTTTTATATTGTTTAATATTTTGTTTGTATCATATTTCTCTTCCATTACCCAATTCTTAAACCACCCTTTCACTCACATATTTCCGCTCACTTATTTCTCTTAAATTATATGAACTCTTCAAATTCTATTCAATTATTACGTAACCCA]

[+] EMBL CD129128             [CTCGGTACCCGTTCTGCGATAATTATAATTAGTCAAATTGATATGCTAACTAGGAATTCTCGGAACTGTCCAATTCGATTCAGATAAAACTCTGTGGGCACGACTGGGCATACTGCGTTTGAAATTAAAATTACGCGCGGGACCAAGTACAAAGGAATTACTAATTAGCACAATCACTACGGTTATTCAGCTAGTAGTAAAATTAAATAAGACTGTAACATAGTTCGACGTTGAGATGGAGGACATTTGTAGCTCAGGTGGATAATATCGCATTTCTGAGCATGTTCCAACGAAACTGAGGCTTCGAGGGACCAGGGCTCTCAACAGTGCAATAGCTCGGCATTTACTTGACACTGGGCACAGCATTGATATTTCTCGTGCTTTCAAAATTATCAGCAGACAAAGAAGTACGGCTGCTCTCCGGTTTGCTGAAGCGATCGCGATAAAAAAACAAACCGGATCTATTTATTCAAAAAGAGACAGCGATAAACTTATTACTACCCTGGTGATCTACTTTTTTTGTTTTAGTTTTATATTGTTTAATATTTTGTTTGTATCATATTTCTCTTCCATTACCCAATTCTTAAACCACCCTTTCACTCACATATTTCCGCTCACTTATTTCTCTTAAATTATATGAACTCTTCAAATTCTATTCAATTATTACGTAACCCA]




>consensus_1446#0
CTCGGTACCCGTTCTGCGATAATTATAATTAGTCAAATTGATATGCTAACTAGGAATTCT
CGGAACTGTCCAATTCGATTCAGATAAAACTCTGTGGGCACGACTGGGCATACTGCGTTT
GAAATTAAAATTACGCGCGGGACCAAGTACAAAGGAATTACTAATTAGCACAATCACTAC
GGTTATTCAGCTAGTAGTAAAATTAAATAAGACTGTAACATAGTTCGACGTTGAGATGGA
GGACATTTGTAGCTCAGGTGGATAATATCGCATTTCTGAGCATGTTCCAACGAAACTGAG
GCTTCGAGGGACCAGGGCTCTCAACAGTGCAATAGCTCGGCATTTACTTGACACTGGGCA
CAGCATTGATATTTCTCGTGCTTTCAAAATTATCAGCAGACAAAGAAGTACGGCTGCTCT
CCGGTTTGCTGAAGCGATCGCGATAAAAAAACAAACCGGATCTATTTATTCAAAAAGAGA
CAGCGATAAACTTATTACTACCCTGGTGATCTACTTTTTTTGTTTTAGTTTTATATTGTT
TAATATTTTGTTTGTATCATATTTCTCTTCCATTACCCAATTCTTAAACCACCCTTTCAC
TCACATATTTCCGCTCACTTATTTCTCTTAAATTATATGAACTCTTCAAATTCTATTCAA
TTATTACGTAACCCA

consensusID : consensus_1446#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 594
fasta sequence

                              [ATATTTCTCATGCTTTCANAATTATTAGCAGGCAAAGAAGTACGACTGCTCTACGGTTTTCTGAAGCGATCGCGATAAAAAAAACTTAAACTGGATCTATGTATTCGAAAAGAGACAGTGATAAACTTATTACTACCTTGGTAATCCACTTTTTTTTGTTTTCGTTTTTTGGTTATTAGTTTTATTTTGGTTAATATTTAGTTTGTATTATATTCCTCTTCTATTACCCAATTCTTAAACCACCCTTTCACTCAAACATTTCTGCTCACTTGTTTCTTTTAAATTATGTGAACTCTTCAAATTCTATCCAATTATTACGTAACCCATCTTATCAGTTTTAATTCCATGACTCCTTTATTACCTCTAAAATTATCACACAGTTTATCATATCTGTCTCTAAACTCCACTCAACTATTACACCACCCATCCTTAATGCTTTCTTGATTCTAACACCTAACCTTTTTTCATTCCAATCCTTTACATTCACTTATGTCAATTGTTCCACACTATTTATTATCTCAATGCTAAAATTCTAATACATATTTGGTTGTAAGCGGTTGATGAGAGACCACGAAATATATAGGCCAATTCATA]

[-] EMBL CD076938             [ATATTTCTCATGCTTTCANAATTATTAGCAGGCAAAGAAGTACGACTGCTCTACGGTTTTCTGAAGCGATCGCGATAAAAAAAACTTAAACTGGATCTATGTATTCGAAAAGAGACAGTGATAAACTTATTACTACCTTGGTAATCCACTTTTTTTTGTTTTCGTTTTTTGGTTATTAGTTTTATTTTGGTTAATATTTAGTTTGTATTATATTCCTCTTCTATTACCCAATTCTTAAACCACCCTTTCACTCAAACATTTCTGCTCACTTGTTTCTTTTAAATTATGTGAACTCTTCAAATTCTATCCAATTATTACGTAACCCATCTTATCAGTTTTAATTCCATGACTCCTTTATTACCTCTAAAATTATCACACAGTTTATCATATCTGTCTCTAAACTCCACTCAACTATTACACCACCCATCCTTAATGCTTTCTTGATTCTAACACCTAACCTTTTTTCATTCCAATCCTTTACATTCACTTATGTCAATTGTTCCACACTATTTATTATCTCAATGCTAAAATTCTAATACATATTTGGTTGTAAGCGGTTGATGAGAGACCACGAAATATATAGGCCAATTCATA]




>consensus_1446#1
ATATTTCTCATGCTTTCANAATTATTAGCAGGCAAAGAAGTACGACTGCTCTACGGTTTT
CTGAAGCGATCGCGATAAAAAAAACTTAAACTGGATCTATGTATTCGAAAAGAGACAGTG
ATAAACTTATTACTACCTTGGTAATCCACTTTTTTTTGTTTTCGTTTTTTGGTTATTAGT
TTTATTTTGGTTAATATTTAGTTTGTATTATATTCCTCTTCTATTACCCAATTCTTAAAC
CACCCTTTCACTCAAACATTTCTGCTCACTTGTTTCTTTTAAATTATGTGAACTCTTCAA
ATTCTATCCAATTATTACGTAACCCATCTTATCAGTTTTAATTCCATGACTCCTTTATTA
CCTCTAAAATTATCACACAGTTTATCATATCTGTCTCTAAACTCCACTCAACTATTACAC
CACCCATCCTTAATGCTTTCTTGATTCTAACACCTAACCTTTTTTCATTCCAATCCTTTA
CATTCACTTATGTCAATTGTTCCACACTATTTATTATCTCAATGCTAAAATTCTAATACA
TATTTGGTTGTAAGCGGTTGATGAGAGACCACGAAATATATAGGCCAATTCATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1446#0      CTCGGTACCCGTTCTGCGATAATTATAATTAGTCAAATTGATATG-CTAACTAGGAATTC 59
consensus_1446#1      -ATATTTCTCATGCTTTCANAATTATTAGCAGGCAAAGAAGTACGACTGCTCTACGGTTT 59
                           * * * * **   * ****** *  ** ****    ** * **         ** 

consensus_1446#0      TCGGAACTGTCCAATTCGATTCAGATAAAACTCTGTGGGCACGACTGGGCATACTGCGTT 119
consensus_1446#1      TCTGAAGCGATCG---CGAT--AAAAAAAACTTAA--------ACTGGATCTA-TGTATT 105
                      ** ***  *  *    ****  * * ******           *****   ** **  **

consensus_1446#0      TGAAATTAAAATTACGCGCGGGACCAAGTACAAAGGAATTACTAATTAGCACAATC--AC 177
consensus_1446#1      CGAAA--AGAGACA-GTGATAAACTTATTACTACC---TTGGTAATCCACTTTTTTTTGT 159
                       ****  * *   * * *    **  * *** *     **  ****   *    *     

consensus_1446#0      TACGGTTATTCAGCTAGTAGTAAAATTAAATAAGACTGTAACATAGTTCGACGTTGAGAT 237
consensus_1446#1      TTTCGTTTTTTGGTTATTAGT----TTTATTTTGGTTAATATTTAGTTTG----TATTAT 211
                      *   *** **  * ** ****    ** * *  *  *   *  ***** *    *   **

consensus_1446#0      GGAGGACATTTGTAGCTCAGGTGGATAATATCGCATTTCTGAGCATGTTCCAACGAAACT 297
consensus_1446#1      ATTCCTCTTCTATTACCCAATTCTTAAACCACCCTTTCACTCAAACATTTCTGCTCACTT 271
                            * * * *  * **  *    **   * * **       *  ** *  *  *  *

consensus_1446#0      GAGGCTTCGAGGG-ACCAGGGCTCTCAACAGTGCAATAGCTCGGCATTTACTTGACACTG 356
consensus_1446#1      GTTTCTTTTAAATTATGTGAACTCTTCAAATTCTA----TCCAATTATTACGTAACCC-- 325
                      *   ***  *    *   *  ****  * * *  *      *     **** * ** *  

consensus_1446#0      GGCACAGCATTGATATTTCTCGTGCTTTCAAAATTATCAGCAGACAAAGAAGTACGGCTG 416
consensus_1446#1      ATCTTATCAGTTTTAATTC-CATGACTCCTTTATTACCTCTAAA------------ATTA 372
                        *  * ** *  ** *** * **  * *   **** *   * *              * 

consensus_1446#0      CTCTCCGGTTTGCTGAAGCGATCGCGATAAAAAAACAAACCGGATCTATTTATTCAAAAA 476
consensus_1446#1      TCACACAGTTTATCATATCTGTCTC----------TAAACTCCACTCAACTATT--ACAC 420
                           * ****     * *  ** *           ****   *   *  ****  * * 

consensus_1446#0      GAGACAGCGATAAACTTATTACTACCCTGGTGATCTACTTTTTTT-GTTTTAGTTTTATA 535
consensus_1446#1      CACCCATCCTTAATGCTTTCTTGATTCTAACACCTAACCTTTTTTCATTCCAATCCTTTA 480
                       *  ** *  ***   * *    *  **        ** ******  **  * *  * **

consensus_1446#0      TTGTTTAATATTTTGTTTGTATCATATTTCTCTTCCATTACCCAATTCTTAAACCACCCT 595
consensus_1446#1      CATTCACTTATGTCAATTGTTCCACACTATTTAT---TATCTCAATGCTAAAATTCTAAT 537
                         *    *** *   ****  ** * *  *  *   *  * **** ** ***      *

consensus_1446#0      TT-CACTCACATATTTCCGCTCACTTATTTCTCTTAAATTATATGAACTC-TTCAAATTC 653
consensus_1446#1      ACATATTTGGTTGTAAGCGGTTGATGAGAGACCACGAAATATATAGGCCAATTCATA--- 594
                          * *    * *   ** *   * *     *   ** *****   *   **** *   

consensus_1446#0      TATTCAATTATTACGTAACCCA 675
consensus_1446#1      ----------------------